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Distance from Sub-Saharan Africa Predicts Mutational Load in Diverse Human Genomes

By Brenna M. Henn, Laura R. Botigué, Stephan Peischl, Isabelle Dupanloup, Mikhail Lipatov, Brian K Maples, Alicia R. Martin, Shaila Musharoff, Howard Cann, Michael P. Snyder, Laurent Excoffier, Jeffrey M. Kidd, Carlos D. Bustamante

Posted 22 May 2015
bioRxiv DOI: 10.1101/019711 (published DOI: 10.1073/pnas.1510805112)

The Out-of-Africa (OOA) dispersal ~50,000 years ago is characterized by a series of founder events as modern humans expanded into multiple continents. Population genetics theory predicts an increase of mutational load in populations undergoing serial founder effects during range expansions. To test this hypothesis, we have sequenced full genomes and high-coverage exomes from 7 geographically divergent human populations from Namibia, Congo, Algeria, Pakistan, Cambodia, Siberia and Mexico. We find that individual genomes vary modestly in the overall number of predicted deleterious alleles. We show via spatially explicit simulations that the observed distribution of deleterious allele frequencies is consistent with the OOA dispersal, particularly under a model where deleterious mutations are recessive. We conclude that there is a strong signal of purifying selection at conserved genomic positions within Africa, but that many predicted deleterious mutations have evolved as if they were neutral during the expansion out of Africa. Under a model where selection is inversely related to dominance, we show that OOA populations are likely to have a higher mutation load due to increased allele frequencies of nearly neutral variants that are recessive or partially recessive.

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