Rxivist logo

An automated model reduction tool to guide the design and analysis of synthetic biological circuits

By Ayush Pandey, Richard M. Murray

Posted 17 May 2019
bioRxiv DOI: 10.1101/640276

We present an automated model reduction algorithm that uses quasi-steady state approximation based reduction to minimize the error between the desired outputs. Additionally, the algorithm minimizes the sensitivity of the error with respect to parameters to ensure robust performance of the reduced model in the presence of parametric uncertainties. We develop the theory for this model reduction algorithm and present the implementation of the algorithm that can be used to perform model reduction of given SBML models. To demonstrate the utility of this algorithm, we consider the design of a synthetic biological circuit to control the population density and composition of a consortium consisting of two different cell strains. We show how the model reduction algorithm can be used to guide the design and analysis of this circuit.

Download data

  • Downloaded 505 times
  • Download rankings, all-time:
    • Site-wide: 48,631
    • In synthetic biology: 593
  • Year to date:
    • Site-wide: 98,664
  • Since beginning of last month:
    • Site-wide: 98,664

Altmetric data


Downloads over time

Distribution of downloads per paper, site-wide


PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News