Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,230 bioRxiv papers from 306,630 authors.

Gene expression profiling reveals U1 snRNA regulates cancer gene expression

By Zhi Cheng, Yu Sun, Xiaoran Niu, YingChun Shang, Zhenfeng Wu, Jinsong Shi, Shan Gao, Tao Zhang

Posted 12 Jan 2017
bioRxiv DOI: 10.1101/099929 (published DOI: 10.18632/oncotarget.22842)

U1 small nuclear RNA (U1 snRNA), as one of the most abundant noncoding RNA in eukaryotic cells plays an important role in splicing of pre-mRNAs. Compared to other studies which have focused on the primary function of U1 snRNA and the neurodegenerative diseases caused by the abnormalities of U1 snRNA, this study is to investigate how the U1 snRNA over-expression affects the expression of genes on a genome-wide scale. In this study, we built a model of U1 snRNA over-expression in a rat cell line. By comparing the gene expression profiles of U1 snRNA over-expressed cells with those of their controls using the microarray experiments, 916 genes or loci were identified significantly differentially expressed. These 595 up-regulated genes and 321 down-regulated genes were further analyzed using the annotations from the GO terms and the KEGG database. As a result, three of 12 enriched pathways are well-known cancer pathways, while nine of them were associated to cancers in previous studies. The further analysis of 73 genes involved in 12 pathways suggests that U1 snRNA regulates cancer gene expression. The microarray data with ID GSE84304 is available in the NCBI GEO database.

Download data

  • Downloaded 5,496 times
  • Download rankings, all-time:
    • Site-wide: 386 out of 70,230
    • In cancer biology: 11 out of 2,389
  • Year to date:
    • Site-wide: 59,824 out of 70,230
  • Since beginning of last month:
    • Site-wide: 58,838 out of 70,230

Altmetric data

Downloads over time

Distribution of downloads per paper, site-wide


Sign up for the Rxivist weekly newsletter! (Click here for more details.)