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Author: Daniel M Zuckerman

Rankings

  • All-time downloads: 17,774 (rank: 18,361 (tie) )
  • Categories:
    • biochemistry: 817 (rank: 12,691 (tie) )
    • biophysics: 15,542 (rank: 119 )
    • cancer biology: 692 (rank: 24,606 (tie) )
    • systems biology: 514 (rank: 12,688 (tie) )

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Preprints

#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol

biophysics more details view paper
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    • Site-wide: 4,730
    • In biophysics: 68
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Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 Å

biophysics more details view paper
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    • Site-wide: 5,762
    • In biophysics: 85
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    • Site-wide: 83,107
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    • Site-wide: 53,911

Continuum dynamics and statistical correction of compositional heterogeneity in multivalent IDP oligomers resolved by single-particle EM

biophysics more details view paper
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    • Site-wide: 35,169
    • In biophysics: 1,047
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    • Site-wide: 159,122
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    • Site-wide: 39,858

What Markov state models can and cannot do: Correlation versus path-based observables in protein folding models

biophysics more details view paper
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    • Site-wide: 36,398
    • In biophysics: 1,083
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    • Site-wide: 86,176
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High-throughput single-particle tracking reveals nested membrane nanodomain organization that dictates Ras diffusion and trafficking

biophysics more details view paper
  • Downloaded 923 times
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    • Site-wide: 45,127
    • In biophysics: 1,403
  • Year to date:
    • Site-wide: 53,080
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Should virus capsids assemble perfectly? Theory and observation of defects

biophysics more details view paper
  • Downloaded 885 times
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    • Site-wide: 48,245
    • In biophysics: 1,518
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A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms

biophysics more details view paper
  • Downloaded 859 times
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    • Site-wide: 50,387
    • In biophysics: 1,606
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HER2 Cancer Protrusion Growth Signaling Regulated by Unhindered, Localized Filopodial Dynamics

cancer biology more details view paper
  • Downloaded 703 times
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    • Site-wide: 67,753
    • In cancer biology: 1,996
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    • Site-wide: 97,586
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Middle-way flexible docking: Pose prediction using mixed-resolution Monte Carlo in estrogen receptor α

biophysics more details view paper
  • Downloaded 638 times
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    • Site-wide: 77,384
    • In biophysics: 2,678
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Computational estimation of ms-sec atomistic folding times

biophysics more details view paper
  • Downloaded 630 times
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    • Site-wide: 78,607
    • In biophysics: 2,736
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    • Site-wide: 138,893
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Morphodynamical cell-state description via live-cell imaging trajectory embedding

systems biology more details view paper
  • Downloaded 553 times
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    • Site-wide: 92,780
    • In systems biology: 2,087
  • Year to date:
    • Site-wide: 8,471
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    • Site-wide: 5,143

Vascular KATP channel structural dynamics reveal regulatory mechanism by Mg-nucleotides

biochemistry more details view paper
  • Downloaded 507 times
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    • Site-wide: 102,581
    • In biochemistry: 2,912
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    • Site-wide: 110,568
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WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications

biophysics more details view paper
  • Downloaded 458 times
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    • Site-wide: 114,340
    • In biophysics: 4,270
  • Year to date:
    • Site-wide: 54,706
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Extensive Evaluation of Weighted Ensemble Strategies for Calculating Rate Constants and Binding Affinities of Molecular Association/Dissociation Processes

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    • Site-wide: 114,418
    • In biophysics: 4,324
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    • Site-wide: 37,077
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    • Site-wide: 92,195

Stochastic Simulation to Visualize Gene Expression and Error Correction in Living Cells

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    • Site-wide: 120,696
    • In biophysics: 4,514
  • Year to date:
    • Site-wide: 138,760
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Connexin 46 and connexin 50 gap junction channel open stability and unitary conductance are shaped by structural and dynamic features of their N-terminal domains

biophysics more details view paper
  • Downloaded 376 times
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    • Site-wide: 137,074
    • In biophysics: 5,229
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    • Site-wide: 84,338
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    • Site-wide: 126,610

Ligand-mediated structural dynamics of a mammalian pancreatic KATP channel

biochemistry more details view paper
  • Downloaded 325 times
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    • Site-wide: 152,583
    • In biochemistry: 4,753
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    • Site-wide: 44,561
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    • Site-wide: 58,674

Quantifying cooperative multisite binding in the hub protein LC8 through Bayesian inference

biophysics more details view paper
  • Downloaded 213 times
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    • Site-wide: 184,462
    • In biophysics: 7,200
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    • Site-wide: 70,857
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A Suite of Advanced Tutorials for the WESTPA 2.0 Rare-Events Sampling Software

biophysics more details view paper
  • Downloaded 100 times
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    • Site-wide: 207,611
    • In biophysics: 8,045
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