Author: Alexander E. Lipka

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Preprints

The regulatory landscape of early maize inflorescence development

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  • Site-wide: 19,720
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  • Site-wide: 82,605

polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids

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  • Site-wide: 26,009
  • In bioinformatics: 2,647
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  • Site-wide: 188,028

HAPPI GWAS: Holistic Analysis with Pre and Post Integration GWAS

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  • Site-wide: 32,841
  • In bioinformatics: 3,657
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  • Site-wide: 34,603

Genetic analysis of the transition from wild to domesticated cotton (G. hirsutum L.)

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  • Site-wide: 37,024
  • In genetics: 1,535
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  • Site-wide: 85,103
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  • Site-wide: 66,487

Elemental Accumulation in Kernels of the Maize Nested Association Mapping Panel Reveals Signals of Gene by Environment Interactions

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  • Site-wide: 41,603
  • In plant biology: 741
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Genomic prediction informed by biological processes expands our understanding of the genetic architecture underlying free amino acid traits in dry Arabidopsis seeds

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  • Site-wide: 42,374
  • In genetics: 1,663
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  • Site-wide: 126,386
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  • Site-wide: 167,077

Eleven biosynthetic genes explain the majority of natural variation for carotenoid levels in maize grain

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  • Site-wide: 48,002
  • In genetics: 1,889
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  • Site-wide: 88,063
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  • Site-wide: 106,516

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria

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  • Site-wide: 54,488
  • In plant biology: 1,087
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  • Site-wide: 93,013

A population-level statistic for assessing Mendelian behavior of genotyping-by-sequencing data from highly duplicated genomes

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  • In bioinformatics: 8,285
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simplePHENOTYPES: SIMulation of Pleiotropic, Linked and Epistatic PHENOTYPES

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  • Site-wide: 120,709
  • In bioinformatics: 9,407
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  • Site-wide: 162,259
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Genetic variation associated with PPO-inhibiting herbicide tolerance in sorghum

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  • Site-wide: 161,280
  • In plant biology: 4,174
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  • Site-wide: 182,520
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  • Site-wide: 189,090

Simulation study evaluating the ability of two statistical approaches to identify variance quantitative trait loci Arabidopsis and maize

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  • Site-wide: 167,881
  • In genetics: 6,042
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  • Site-wide: 113,327
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  • Site-wide: 147,622