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Author: Trey Ideker

Rankings

  • All-time downloads: 200,687 (rank: 88 out of 425,798)
  • Categories:
    • bioinformatics: 1,884 (rank: 6,544 (tie) out of 36,149)
    • cancer biology: 990 (rank: 5,961 (tie) out of 30,353)
    • evolutionary biology: 23,431 (rank: 46 out of 21,702)
    • genetics: 1,522 (rank: 10,328 (tie) out of 37,939)
    • genomics: 1,915 (rank: 10,550 (tie) out of 44,530)
    • microbiology: 31 (rank: 49,652 (tie) out of 50,400)
    • systems biology: 170,914 (rank: 3 out of 12,451)

Downloads per author, site-wide

Preprints

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

systems biology more details view paper
  • Downloaded 168,470 times
  • Download rankings, all-time:
    • Site-wide: 6 out of 100,791
    • In systems biology: 1 out of 2,563
  • Year to date:
    • Site-wide: 4 out of 100,791
  • Since beginning of last month:
    • Site-wide: 23 out of 100,791

Quantitative translation of dog-to-human aging by conserved remodeling of epigenetic networks

evolutionary biology more details view paper
  • Downloaded 23,015 times
  • Download rankings, all-time:
    • Site-wide: 73 out of 100,791
    • In evolutionary biology: 5 out of 6,017
  • Year to date:
    • Site-wide: 228 out of 100,791
  • Since beginning of last month:
    • Site-wide: 585 out of 100,791

Pan-Cancer Analysis Reveals Technical Artifacts in The Cancer Genome Atlas (TCGA) Germline Variant Calls

genomics more details view paper
  • Downloaded 1,915 times
  • Download rankings, all-time:
    • Site-wide: 4,491 out of 100,791
    • In genomics: 739 out of 6,251
  • Year to date:
    • Site-wide: 72,399 out of 100,791
  • Since beginning of last month:
    • Site-wide: 58,145 out of 100,791

Thousands of missing variants in the UK BioBankare recoverable by genome realignment

genetics more details view paper
  • Downloaded 1,522 times
  • Download rankings, all-time:
    • Site-wide: 6,598 out of 100,791
    • In genetics: 468 out of 5,019
  • Year to date:
    • Site-wide: 6,049 out of 100,791
  • Since beginning of last month:
    • Site-wide: 11,198 out of 100,791

Deciphering signaling specificity with interpretable deep neural networks

bioinformatics more details view paper
  • Downloaded 1,033 times
  • Download rankings, all-time:
    • Site-wide: 12,599 out of 100,791
    • In bioinformatics: 1,981 out of 9,254
  • Year to date:
    • Site-wide: 48,850 out of 100,791
  • Since beginning of last month:
    • Site-wide: 43,987 out of 100,791

Mapping cell structure across scales by fusing protein images and interactions

systems biology more details view paper
  • Downloaded 1,003 times
  • Download rankings, all-time:
    • Site-wide: 13,213 out of 100,791
    • In systems biology: 351 out of 2,563
  • Year to date:
    • Site-wide: 2,538 out of 100,791
  • Since beginning of last month:
    • Site-wide: 4,222 out of 100,791

Deep functional synthesis: a machine learning approach to gene functional enrichment

systems biology more details view paper
  • Downloaded 865 times
  • Download rankings, all-time:
    • Site-wide: 16,734 out of 100,791
    • In systems biology: 448 out of 2,563
  • Year to date:
    • Site-wide: 8,883 out of 100,791
  • Since beginning of last month:
    • Site-wide: 19,013 out of 100,791

Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning

bioinformatics more details view paper
  • Downloaded 851 times
  • Download rankings, all-time:
    • Site-wide: 17,163 out of 100,791
    • In bioinformatics: 2,581 out of 9,254
  • Year to date:
    • Site-wide: 24,450 out of 100,791
  • Since beginning of last month:
    • Site-wide: 12,844 out of 100,791

Synthetic essentiality of metabolic regulator PDHK1 in PTEN-deficient cells and cancers

cancer biology more details view paper
  • Downloaded 603 times
  • Download rankings, all-time:
    • Site-wide: 28,457 out of 100,791
    • In cancer biology: 908 out of 3,611
  • Year to date:
    • Site-wide: 48,294 out of 100,791
  • Since beginning of last month:
    • Site-wide: 55,946 out of 100,791

Identifying persistent structures in multiscale ‘omics data

systems biology more details view paper
  • Downloaded 576 times
  • Download rankings, all-time:
    • Site-wide: 30,160 out of 100,791
    • In systems biology: 843 out of 2,563
  • Year to date:
    • Site-wide: 5,914 out of 100,791
  • Since beginning of last month:
    • Site-wide: 3,161 out of 100,791

De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences

evolutionary biology more details view paper
  • Downloaded 416 times
  • Download rankings, all-time:
    • Site-wide: 44,763 out of 100,791
    • In evolutionary biology: 2,981 out of 6,017
  • Year to date:
    • Site-wide: 61,875 out of 100,791
  • Since beginning of last month:
    • Site-wide: 60,638 out of 100,791

Target deconvolution using in vitro evolution in haploid human cells

cancer biology more details view paper
  • Downloaded 387 times
  • Download rankings, all-time:
    • Site-wide: 48,221 out of 100,791
    • In cancer biology: 1,534 out of 3,611
  • Year to date:
    • Site-wide: 10,962 out of 100,791
  • Since beginning of last month:
    • Site-wide: 16,140 out of 100,791

Functional Landscape of SARS-CoV-2 Cellular Restriction

microbiology more details view paper
  • Downloaded 31 times
  • Download rankings, all-time:
    • Site-wide: 98,368 out of 100,791
    • In microbiology: 8,619 out of 8,942
  • Year to date:
    • Site-wide: 98,319 out of 100,791
  • Since beginning of last month:
    • Site-wide: 25,906 out of 100,791

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News

  • 20 Oct 2020: Support for sorting preprints using Twitter activity has been removed, at least temporarily, until a new source of social media activity data becomes available.
  • 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
  • 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
  • 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
  • 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
  • 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
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  • 22 Jan 2019: Nature just published an article about Rxivist and our data.
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