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Author: Trey Ideker

  • ORCiD: http://orcid.org/0000-0002-1708-8454
  • Most recently observed institution: Department of Medicine, Division of Genetics; Department of Computer Science and Engineering; Department of Bioengineering, University of California San Diego, La Jolla, CA 92093, USA

Rankings

  • All-time downloads: 206,541 (rank: 236 )
  • Categories:
    • bioinformatics: 1,969 (rank: 6,748 (tie) )
    • cancer biology: 1,077 (rank: 6,105 )
    • developmental biology: 96 (rank: 17,711 (tie) )
    • evolutionary biology: 24,023 (rank: 49 )
    • genetics: 1,614 (rank: 10,493 (tie) )
    • genomics: 1,934 (rank: 11,203 (tie) )
    • microbiology: 1,276 (rank: 9,465 (tie) )
    • systems biology: 174,552 (rank: 3 )

Downloads per author, site-wide

Preprints

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

systems biology more details view paper
  • Downloaded 171,829 times
  • Download rankings, all-time:
    • Site-wide: 18
    • In systems biology: 1
  • Year to date:
    • Site-wide: 162
  • Since beginning of last month:
    • Site-wide: 225

Quantitative translation of dog-to-human aging by conserved remodeling of epigenetic networks

evolutionary biology more details view paper
  • Downloaded 23,584 times
  • Download rankings, all-time:
    • Site-wide: 251
    • In evolutionary biology: 5
  • Year to date:
    • Site-wide: 1,949
  • Since beginning of last month:
    • Site-wide: 2,011

Pan-Cancer Analysis Reveals Technical Artifacts in The Cancer Genome Atlas (TCGA) Germline Variant Calls

genomics more details view paper
  • Downloaded 1,934 times
  • Download rankings, all-time:
    • Site-wide: 6,863
    • In genomics: 783
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 116,218

Thousands of missing variants in the UK BioBankare recoverable by genome realignment

genetics more details view paper
  • Downloaded 1,614 times
  • Download rankings, all-time:
    • Site-wide: 9,008
    • In genetics: 459
  • Year to date:
    • Site-wide: 19,609
  • Since beginning of last month:
    • Site-wide: 30,789

Functional Landscape of SARS-CoV-2 Cellular Restriction

microbiology more details view paper
  • Downloaded 1,276 times
  • Download rankings, all-time:
    • Site-wide: 12,782
    • In microbiology: 716
  • Year to date:
    • Site-wide: 677
  • Since beginning of last month:
    • Site-wide: 1,017

Mapping cell structure across scales by fusing protein images and interactions

systems biology more details view paper
  • Downloaded 1,095 times
  • Download rankings, all-time:
    • Site-wide: 16,104
    • In systems biology: 340
  • Year to date:
    • Site-wide: 29,349
  • Since beginning of last month:
    • Site-wide: 20,651

Deciphering signaling specificity with interpretable deep neural networks

bioinformatics more details view paper
  • Downloaded 1,066 times
  • Download rankings, all-time:
    • Site-wide: 16,769
    • In bioinformatics: 2,087
  • Year to date:
    • Site-wide: 32,575
  • Since beginning of last month:
    • Site-wide: 82,813

Deep functional synthesis: a machine learning approach to gene functional enrichment

systems biology more details view paper
  • Downloaded 954 times
  • Download rankings, all-time:
    • Site-wide: 19,742
    • In systems biology: 424
  • Year to date:
    • Site-wide: 21,529
  • Since beginning of last month:
    • Site-wide: 23,471

Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning

bioinformatics more details view paper
  • Downloaded 903 times
  • Download rankings, all-time:
    • Site-wide: 21,369
    • In bioinformatics: 2,622
  • Year to date:
    • Site-wide: 32,980
  • Since beginning of last month:
    • Site-wide: 54,479

Identifying persistent structures in multiscale ‘omics data

systems biology more details view paper
  • Downloaded 674 times
  • Download rankings, all-time:
    • Site-wide: 32,235
    • In systems biology: 748
  • Year to date:
    • Site-wide: 19,709
  • Since beginning of last month:
    • Site-wide: 50,758

Synthetic essentiality of metabolic regulator PDHK1 in PTEN-deficient cells and cancers

cancer biology more details view paper
  • Downloaded 620 times
  • Download rankings, all-time:
    • Site-wide: 35,921
    • In cancer biology: 976
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 104,579

Target deconvolution using in vitro evolution in haploid human cells

cancer biology more details view paper
  • Downloaded 457 times
  • Download rankings, all-time:
    • Site-wide: 51,815
    • In cancer biology: 1,452
  • Year to date:
    • Site-wide: 26,069
  • Since beginning of last month:
    • Site-wide: 23,123

De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences

evolutionary biology more details view paper
  • Downloaded 439 times
  • Download rankings, all-time:
    • Site-wide: 54,161
    • In evolutionary biology: 3,066
  • Year to date:
    • Site-wide: 52,885
  • Since beginning of last month:
    • Site-wide: 86,637

Unveiling unexpected complexity and multipotentiality of early heart fields

developmental biology more details view paper
  • Downloaded 96 times
  • Download rankings, all-time:
    • Site-wide: 116,424
    • In developmental biology: 3,121
  • Year to date:
    • Site-wide: 1,583
  • Since beginning of last month:
    • Site-wide: None

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