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Author: John Kenneth Baillie

Rankings

  • All-time downloads: 490,086 (rank: 57 )
  • Categories:
    • bioinformatics: 233 (rank: 44,018 (tie) )
    • cell biology: 526 (rank: 25,840 (tie) )
    • epidemiology: 1,115 (rank: 12,432 (tie) )
    • genetic and genomic medicine: 4,589 (rank: 1,002 )
    • genomics: 6,537 (rank: 4,033 (tie) )
    • hiv aids: 1,357 (rank: 135 (tie) )
    • immunology: 9,507 (rank: 1,397 )
    • infectious diseases: 380,311 (rank: 58 )
    • intensive care and critical care medicine: 19,852 (rank: 100 )
    • microbiology: 34,287 (rank: 549 )
    • molecular biology: 1,028 (rank: 8,007 (tie) )
    • pediatrics: 2,195 (rank: 398 (tie) )
    • physiology: 610 (rank: 3,558 (tie) )
    • respiratory medicine: 3,043 (rank: 406 (tie) )
    • systems biology: 1,590 (rank: 3,370 (tie) )

Downloads per author, site-wide

Preprints

An international observational study to assess the impact of the Omicron variant emergence on the clinical epidemiology of COVID-19 in hospitalised patients

public and global health more details view paper

No download data for this paper yet.

Effect of Dexamethasone in Hospitalized Patients with COVID-19: Preliminary Report

infectious diseases more details view paper
  • Downloaded 110,261 times
  • Download rankings, all-time:
    • Site-wide: 63
    • In infectious diseases: 23
  • Year to date:
    • Site-wide: 395
  • Since beginning of last month:
    • Site-wide: 721

Features of 16,749 hospitalised UK patients with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol

infectious diseases more details view paper
  • Downloaded 98,125 times
  • Download rankings, all-time:
    • Site-wide: 78
    • In infectious diseases: 27
  • Year to date:
    • Site-wide: 226
  • Since beginning of last month:
    • Site-wide: 217

Effect of Hydroxychloroquine in Hospitalized Patients with COVID-19: Preliminary results from a multi-centre, randomized, controlled trial.

infectious diseases more details view paper
  • Downloaded 42,689 times
  • Download rankings, all-time:
    • Site-wide: 221
    • In infectious diseases: 84
  • Year to date:
    • Site-wide: 2,592
  • Since beginning of last month:
    • Site-wide: 3,602

Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses

microbiology more details view paper
  • Downloaded 35,654 times
  • Download rankings, all-time:
    • Site-wide: 277
    • In microbiology: 29
  • Year to date:
    • Site-wide: 34
  • Since beginning of last month:
    • Site-wide: 241

Tocilizumab in patients admitted to hospital with COVID-19 (RECOVERY): preliminary results of a randomised, controlled, open-label, platform trial

infectious diseases more details view paper
  • Downloaded 32,357 times
  • Download rankings, all-time:
    • Site-wide: 310
    • In infectious diseases: 115
  • Year to date:
    • Site-wide: 1,197
  • Since beginning of last month:
    • Site-wide: 1,916

Casirivimab and imdevimab in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial

infectious diseases more details view paper
  • Downloaded 24,462 times
  • Download rankings, all-time:
    • Site-wide: 429
    • In infectious diseases: 164
  • Year to date:
    • Site-wide: 270
  • Since beginning of last month:
    • Site-wide: 4,712

Genetic mechanisms of critical illness in Covid-19

intensive care and critical care medicine more details view paper
  • Downloaded 11,046 times
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    • Site-wide: 1,131
    • In intensive care and critical care medicine: 8
  • Year to date:
    • Site-wide: 19,587
  • Since beginning of last month:
    • Site-wide: 45,755

Physical, cognitive and mental health impacts of COVID-19 following hospitalisation: a multi-centre prospective cohort study

infectious diseases more details view paper
  • Downloaded 10,783 times
  • Download rankings, all-time:
    • Site-wide: 1,166
    • In infectious diseases: 394
  • Year to date:
    • Site-wide: 1,294
  • Since beginning of last month:
    • Site-wide: 2,107

Tissue-specific tolerance in fatal Covid-19

infectious diseases more details view paper
  • Downloaded 9,335 times
  • Download rankings, all-time:
    • Site-wide: 1,378
    • In infectious diseases: 420
  • Year to date:
    • Site-wide: 46,288
  • Since beginning of last month:
    • Site-wide: 48,518

ISARIC COVID-19 Clinical Data Report: 27 March 2022

infectious diseases more details view paper
  • Downloaded 7,375 times
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    • Site-wide: 1,860
    • In infectious diseases: 601
  • Year to date:
    • Site-wide: 831
  • Since beginning of last month:
    • Site-wide: 630

Broad and strong memory CD4+ and CD8+ T cells induced by SARS-CoV-2 in UK convalescent COVID-19 patients.

immunology more details view paper
  • Downloaded 7,280 times
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    • Site-wide: 1,895
    • In immunology: 66
  • Year to date:
    • Site-wide: 16,927
  • Since beginning of last month:
    • Site-wide: 39,209

Neutralising antibodies to SARS coronavirus 2 in Scottish blood donors - a pilot study of the value of serology to determine population exposure

infectious diseases more details view paper
  • Downloaded 7,137 times
  • Download rankings, all-time:
    • Site-wide: 1,948
    • In infectious diseases: 542
  • Year to date:
    • Site-wide: 37,929
  • Since beginning of last month:
    • Site-wide: 53,343

Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation of nasopharyngeal swabs from patients with COVID-19

infectious diseases more details view paper
  • Downloaded 7,118 times
  • Download rankings, all-time:
    • Site-wide: 1,957
    • In infectious diseases: 554
  • Year to date:
    • Site-wide: 16,940
  • Since beginning of last month:
    • Site-wide: 11,829

An adaptive randomized controlled trial of non-invasive respiratory strategies in acute respiratory failure patients with COVID-19

intensive care and critical care medicine more details view paper
  • Downloaded 6,633 times
  • Download rankings, all-time:
    • Site-wide: 2,163
    • In intensive care and critical care medicine: 12
  • Year to date:
    • Site-wide: 2,028
  • Since beginning of last month:
    • Site-wide: 6,269

Convalescent plasma in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial

infectious diseases more details view paper
  • Downloaded 6,606 times
  • Download rankings, all-time:
    • Site-wide: 2,173
    • In infectious diseases: 594
  • Year to date:
    • Site-wide: 15,386
  • Since beginning of last month:
    • Site-wide: 13,665

Baricitinib in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial and updated meta-analysis

infectious diseases more details view paper
  • Downloaded 6,350 times
  • Download rankings, all-time:
    • Site-wide: 2,289
    • In infectious diseases: None
  • Year to date:
    • Site-wide: 147
  • Since beginning of last month:
    • Site-wide: 406

Azithromycin in Hospitalised Patients with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial

infectious diseases more details view paper
  • Downloaded 5,240 times
  • Download rankings, all-time:
    • Site-wide: 2,977
    • In infectious diseases: 735
  • Year to date:
    • Site-wide: 18,474
  • Since beginning of last month:
    • Site-wide: 37,239

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

infectious diseases more details view paper
  • Downloaded 4,589 times
  • Download rankings, all-time:
    • Site-wide: 3,562
    • In infectious diseases: 840
  • Year to date:
    • Site-wide: 2,421
  • Since beginning of last month:
    • Site-wide: 3,971

Colchicine in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial

infectious diseases more details view paper
  • Downloaded 4,357 times
  • Download rankings, all-time:
    • Site-wide: 3,796
    • In infectious diseases: 844
  • Year to date:
    • Site-wide: 21,321
  • Since beginning of last month:
    • Site-wide: 21,925

Aspirin in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial

infectious diseases more details view paper
  • Downloaded 3,983 times
  • Download rankings, all-time:
    • Site-wide: 4,316
    • In infectious diseases: 935
  • Year to date:
    • Site-wide: 9,270
  • Since beginning of last month:
    • Site-wide: 19,863

Long Covid in adults discharged from UK hospitals after Covid-19: A prospective, multicentre cohort study using the ISARIC WHO Clinical Characterisation Protocol.

infectious diseases more details view paper
  • Downloaded 3,351 times
  • Download rankings, all-time:
    • Site-wide: 5,554
    • In infectious diseases: 1,097
  • Year to date:
    • Site-wide: 12,156
  • Since beginning of last month:
    • Site-wide: 7,728

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
  • Downloaded 2,904 times
  • Download rankings, all-time:
    • Site-wide: 6,815
    • In genomics: 625
  • Year to date:
    • Site-wide: 69,650
  • Since beginning of last month:
    • Site-wide: 56,882

SARS-CoV-2 RNA detected in blood samples from patients with COVID-19 is not associated with infectious virus

infectious diseases more details view paper
  • Downloaded 2,809 times
  • Download rankings, all-time:
    • Site-wide: 7,158
    • In infectious diseases: 1,251
  • Year to date:
    • Site-wide: 44,711
  • Since beginning of last month:
    • Site-wide: 102,921

Outcome of hospitalisation for COVID-19 in patients with Interstitial Lung Disease: An international multicentre study.

respiratory medicine more details view paper
  • Downloaded 2,649 times
  • Download rankings, all-time:
    • Site-wide: 7,805
    • In respiratory medicine: 31
  • Year to date:
    • Site-wide: 99,597
  • Since beginning of last month:
    • Site-wide: 118,427

A common TMPRSS2 variant protects against severe COVID-19

genetic and genomic medicine more details view paper
  • Downloaded 2,282 times
  • Download rankings, all-time:
    • Site-wide: 9,712
    • In genetic and genomic medicine: 49
  • Year to date:
    • Site-wide: 11,833
  • Since beginning of last month:
    • Site-wide: 12,744

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

genomics more details view paper
  • Downloaded 2,243 times
  • Download rankings, all-time:
    • Site-wide: 9,943
    • In genomics: 893
  • Year to date:
    • Site-wide: 162,079
  • Since beginning of last month:
    • Site-wide: 169,424

Whole genome sequencing identifies multiple loci for critical illness caused by COVID-19

intensive care and critical care medicine more details view paper
  • Downloaded 2,153 times
  • Download rankings, all-time:
    • Site-wide: 10,567
    • In intensive care and critical care medicine: 52
  • Year to date:
    • Site-wide: 4,482
  • Since beginning of last month:
    • Site-wide: 17,107

Multiomic definition of generalizable endotypes in human acute pancreatitis

systems biology more details view paper
  • Downloaded 1,936 times
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    • Site-wide: 12,428
    • In systems biology: 254
  • Year to date:
    • Site-wide: 5,521
  • Since beginning of last month:
    • Site-wide: 3,671

Elevated antiviral, myeloid and endothelial inflammatory markers in severe COVID-19

infectious diseases more details view paper
  • Downloaded 1,780 times
  • Download rankings, all-time:
    • Site-wide: 14,064
    • In infectious diseases: 1,815
  • Year to date:
    • Site-wide: 63,945
  • Since beginning of last month:
    • Site-wide: 60,105

Clinical characteristics of children and young people hospitalised with covid-19 in the United Kingdom: prospective multicentre observational cohort study

pediatrics more details view paper
  • Downloaded 1,617 times
  • Download rankings, all-time:
    • Site-wide: 16,222
    • In pediatrics: 39
  • Year to date:
    • Site-wide: 74,669
  • Since beginning of last month:
    • Site-wide: 78,570

Sequence analysis of SARS-CoV-2 in nasopharyngeal samples from patients with COVID-19 illustrates population variation and diverse phenotypes, placing the in vitro growth properties of B.1.1.7 and B.1.351 lineage viruses in context.

microbiology more details view paper
  • Downloaded 1,589 times
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    • Site-wide: 16,690
    • In microbiology: 998
  • Year to date:
    • Site-wide: 16,599
  • Since beginning of last month:
    • Site-wide: 44,365

Outcomes of COVID-19 related hospitalisation among people with HIV in the ISARIC WHO Clinical Characterisation Protocol UK Protocol: prospective observational study

hiv aids more details view paper
  • Downloaded 1,492 times
  • Download rankings, all-time:
    • Site-wide: 18,367
    • In hiv aids: 12
  • Year to date:
    • Site-wide: 17,672
  • Since beginning of last month:
    • Site-wide: 16,904

Mendelian randomisation identifies alternative splicing of the FAS death receptor as a mediator of severe COVID-19

infectious diseases more details view paper
  • Downloaded 1,339 times
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    • Site-wide: 21,744
    • In infectious diseases: 2,704
  • Year to date:
    • Site-wide: 6,875
  • Since beginning of last month:
    • Site-wide: 3,838

Proteome-by-phenome Mendelian Randomisation detects 38 proteins with causal roles in human diseases and traits

genomics more details view paper
  • Downloaded 1,251 times
  • Download rankings, all-time:
    • Site-wide: 24,182
    • In genomics: 2,010
  • Year to date:
    • Site-wide: 169,610
  • Since beginning of last month:
    • Site-wide: 173,220

Robust, reproducible clinical patterns in hospitalised patients with COVID-19

infectious diseases more details view paper
  • Downloaded 1,233 times
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    • Site-wide: 24,762
    • In infectious diseases: 2,442
  • Year to date:
    • Site-wide: 49,552
  • Since beginning of last month:
    • Site-wide: 33,886

Short-term forecasts to inform the response to the COVID-19 epidemic in the UK

epidemiology more details view paper
  • Downloaded 1,231 times
  • Download rankings, all-time:
    • Site-wide: 24,810
    • In epidemiology: 1,576
  • Year to date:
    • Site-wide: 19,591
  • Since beginning of last month:
    • Site-wide: 14,578

Systematic review and meta-analysis identifies potential host therapeutic targets in COVID-19.

genetic and genomic medicine more details view paper
  • Downloaded 1,202 times
  • Download rankings, all-time:
    • Site-wide: 25,757
    • In genetic and genomic medicine: 129
  • Year to date:
    • Site-wide: 81,862
  • Since beginning of last month:
    • Site-wide: 124,766

Evaluation of the effectiveness of remdesivir in severe COVID-19 using observational data from a prospective national cohort study

infectious diseases more details view paper
  • Downloaded 1,138 times
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    • Site-wide: 28,011
    • In infectious diseases: 2,926
  • Year to date:
    • Site-wide: 9,650
  • Since beginning of last month:
    • Site-wide: 22,792

Development and validation of the 4C Deterioration model for adults hospitalised with COVID-19

infectious diseases more details view paper
  • Downloaded 1,097 times
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    • Site-wide: 29,573
    • In infectious diseases: 2,671
  • Year to date:
    • Site-wide: 53,683
  • Since beginning of last month:
    • Site-wide: 52,200

What is the recovery rate and risk of long-term consequences following a diagnosis of COVID-19? - A harmonised, global longitudinal observational study

infectious diseases more details view paper
  • Downloaded 1,088 times
  • Download rankings, all-time:
    • Site-wide: 29,935
    • In infectious diseases: 2,659
  • Year to date:
    • Site-wide: 94,767
  • Since beginning of last month:
    • Site-wide: 73,751

Endomembrane targeting of human OAS1 p46 augments antiviral activity

immunology more details view paper
  • Downloaded 1,080 times
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    • Site-wide: 30,272
    • In immunology: 1,007
  • Year to date:
    • Site-wide: 50,256
  • Since beginning of last month:
    • Site-wide: 82,537

Upstream translation initiation expands the coding capacity of segmented negative-strand RNA viruses

molecular biology more details view paper
  • Downloaded 1,062 times
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    • Site-wide: 31,067
    • In molecular biology: 787
  • Year to date:
    • Site-wide: 89,237
  • Since beginning of last month:
    • Site-wide: 66,177

Secreted SARS-CoV-2 ORF8 modulates the cytokine expression profile of human macrophages

microbiology more details view paper
  • Downloaded 879 times
  • Download rankings, all-time:
    • Site-wide: 41,068
    • In microbiology: 2,691
  • Year to date:
    • Site-wide: 24,627
  • Since beginning of last month:
    • Site-wide: 37,437

Risk stratification of patients admitted to hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: development and validation of the 4C Mortality Score

infectious diseases more details view paper
  • Downloaded 862 times
  • Download rankings, all-time:
    • Site-wide: 42,281
    • In infectious diseases: 3,192
  • Year to date:
    • Site-wide: 108,306
  • Since beginning of last month:
    • Site-wide: 125,117

Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severity.

genetic and genomic medicine more details view paper
  • Downloaded 814 times
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    • Site-wide: 46,028
    • In genetic and genomic medicine: 238
  • Year to date:
    • Site-wide: 45,905
  • Since beginning of last month:
    • Site-wide: 52,374

Pandemic, epidemic, endemic: B cell repertoire analysis reveals unique anti-viral responses to SARS-CoV-2, Ebola and Respiratory Syncytial Virus

immunology more details view paper
  • Downloaded 757 times
  • Download rankings, all-time:
    • Site-wide: 51,185
    • In immunology: 1,818
  • Year to date:
    • Site-wide: 20,977
  • Since beginning of last month:
    • Site-wide: 33,597

Comparison of children and young people admitted with SARS-CoV-2 across the UK in the first and second pandemic waves: prospective multicentre observational cohort study

pediatrics more details view paper
  • Downloaded 667 times
  • Download rankings, all-time:
    • Site-wide: 61,192
    • In pediatrics: 113
  • Year to date:
    • Site-wide: 33,354
  • Since beginning of last month:
    • Site-wide: 51,589

Comprehensive characterisation of molecular host-pathogen interactions in influenza A virus-infected human macrophages

immunology more details view paper
  • Downloaded 663 times
  • Download rankings, all-time:
    • Site-wide: 61,672
    • In immunology: 1,822
  • Year to date:
    • Site-wide: 151,534
  • Since beginning of last month:
    • Site-wide: 116,851

Rapid selection of P323L in the SARS-CoV-2 polymerase (NSP12) in humans and non-human primate models and confers a large plaque phenotype

microbiology more details view paper
  • Downloaded 602 times
  • Download rankings, all-time:
    • Site-wide: 69,947
    • In microbiology: 6,898
  • Year to date:
    • Site-wide: 7,996
  • Since beginning of last month:
    • Site-wide: 27,592

Subtractive CRISPR screen identifies factors involved in non-canonical LC3 lipidation.

cell biology more details view paper
  • Downloaded 561 times
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    • Site-wide: 76,230
    • In cell biology: 3,323
  • Year to date:
    • Site-wide: 89,825
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    • Site-wide: 86,420

Shared genetic etiology between idiopathic pulmonary fibrosis and COVID-19 severity

genetic and genomic medicine more details view paper
  • Downloaded 543 times
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    • Site-wide: 79,283
    • In genetic and genomic medicine: 401
  • Year to date:
    • Site-wide: 138,738
  • Since beginning of last month:
    • Site-wide: 100,382

Recovery from Covid-19 critical illness: a secondary analysis of the ISARIC4C CCP-UK cohort study and the RECOVER trial

intensive care and critical care medicine more details view paper
  • Downloaded 518 times
  • Download rankings, all-time:
    • Site-wide: 84,001
    • In intensive care and critical care medicine: 207
  • Year to date:
    • Site-wide: 90,409
  • Since beginning of last month:
    • Site-wide: 80,847

GWAS and meta-analysis identifies multiple new genetic mechanisms underlying severe Covid-19.

intensive care and critical care medicine more details view paper
  • Downloaded 512 times
  • Download rankings, all-time:
    • Site-wide: 85,229
    • In intensive care and critical care medicine: None
  • Year to date:
    • Site-wide: 4,731
  • Since beginning of last month:
    • Site-wide: 9,765

Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative

infectious diseases more details view paper
  • Downloaded 500 times
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    • Site-wide: 87,610
    • In infectious diseases: None
  • Year to date:
    • Site-wide: 4,896
  • Since beginning of last month:
    • Site-wide: 5,948

SARS-CoV-2 environmental contamination from hospitalised COVID-19 patients receiving aerosol generating procedures

respiratory medicine more details view paper
  • Downloaded 458 times
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    • Site-wide: 96,496
    • In respiratory medicine: 199
  • Year to date:
    • Site-wide: 73,854
  • Since beginning of last month:
    • Site-wide: 55,781

Predictive validity of effective shunt fraction in critically ill patients

physiology more details view paper
  • Downloaded 421 times
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    • Site-wide: 105,001
    • In physiology: 787
  • Year to date:
    • Site-wide: 186,572
  • Since beginning of last month:
    • Site-wide: 172,226

Changes in UK hospital mortality in the first wave of COVID-19: the ISARIC WHO Clinical Characterisation Protocol prospective multicentre observational cohort study

infectious diseases more details view paper
  • Downloaded 414 times
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    • Site-wide: 106,586
    • In infectious diseases: 5,108
  • Year to date:
    • Site-wide: 107,647
  • Since beginning of last month:
    • Site-wide: 109,834

Genetic control of KRAB-ZFP genes explains distal CpG-site methylation which associates with human disease phenotypes.

genomics more details view paper
  • Downloaded 323 times
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    • Site-wide: 131,333
    • In genomics: 7,668
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    • Site-wide: 9,530
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    • Site-wide: 38,764

Systematic comparison of ranking aggregation methods for gene lists in experimental results

bioinformatics more details view paper
  • Downloaded 269 times
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    • Site-wide: 147,415
    • In bioinformatics: 11,253
  • Year to date:
    • Site-wide: 12,625
  • Since beginning of last month:
    • Site-wide: 47,967

Characterising pre-clinical sub-phenotypic models of Acute Respiratory Distress Syndrome: an experimental ovine study.

physiology more details view paper
  • Downloaded 215 times
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    • Site-wide: 162,767
    • In physiology: 1,716
  • Year to date:
    • Site-wide: 165,809
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    • Site-wide: 153,203

Hypoxia shapes the immune landscape in lung injury promoting inflammation persistence

cell biology more details view paper
  • Downloaded 202 times
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    • Site-wide: 165,954
    • In cell biology: None
  • Year to date:
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    • Site-wide: 31,947

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