Author: Albin Sandelin

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Preprints

A Unified Architecture of Transcriptional Regulatory Elements

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Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

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Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

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IsoformSwitchAnalyzeR: Analysis of changes in genome-wide patterns of alternative splicing and its functional consequences

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  • In bioinformatics: 2,133
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Nuclear stability and transcriptional directionality separate functionally distinct RNA species

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  • In genomics: 1,810
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Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters

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  • Site-wide: 22,655
  • In genomics: 1,928
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Comprehensive profiling of the fission yeast transcription start site activity during stress and media response

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CAGEfightR: Cap Analysis of Gene Expression (CAGE) in R/Bioconductor

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Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay enzymes

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PAMP-triggered Genetic Reprogramming Involves Widespread Alternative Transcription Initiation and an Immediate Transcription Factor Wave

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  • In plant biology: 2,115
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TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

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  • In bioinformatics: 10,578
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