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Author: Bjoern Peters

Rankings

  • All-time downloads: 99,509 (rank: 1,222 )
  • Categories:
    • bioinformatics: 10,499 (rank: 702 )
    • immunology: 88,762 (rank: 26 )
    • systems biology: 248 (rank: 11,856 (tie) )

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Preprints

A curated collection of human vaccination response signatures

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Immunological memory to SARS-CoV-2 assessed for up to eight months after infection

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  • Downloaded 63,449 times
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    • Site-wide: 83
    • In immunology: 2
  • Year to date:
    • Site-wide: 62
  • Since beginning of last month:
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Negligible impact of SARS-CoV-2 variants on CD4+ and CD8+ T cell reactivity in COVID-19 exposed donors and vaccinees.

immunology more details view paper
  • Downloaded 14,274 times
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    • Site-wide: 484
    • In immunology: 17
  • Year to date:
    • Site-wide: 48
  • Since beginning of last month:
    • Site-wide: 6

Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

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  • Downloaded 4,547 times
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    • Site-wide: 2,270
    • In immunology: 60
  • Year to date:
    • Site-wide: 21,257
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    • Site-wide: 23,858

NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks

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  • Downloaded 4,312 times
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    • Site-wide: 2,449
    • In bioinformatics: 217
  • Year to date:
    • Site-wide: 8,056
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Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

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  • Downloaded 2,309 times
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    • Site-wide: 6,067
    • In immunology: 181
  • Year to date:
    • Site-wide: 787
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NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

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  • Downloaded 2,141 times
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    • Site-wide: 6,758
    • In bioinformatics: 797
  • Year to date:
    • Site-wide: 64,548
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    • Site-wide: 61,743

MOGSA: integrative single sample gene-set analysis of multiple omics data

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  • Downloaded 1,847 times
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    • Site-wide: 8,429
    • In bioinformatics: 1,015
  • Year to date:
    • Site-wide: 19,250
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Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

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  • Downloaded 1,007 times
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    • Site-wide: 20,776
    • In bioinformatics: 2,478
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A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer

immunology more details view paper
  • Downloaded 889 times
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    • Site-wide: 24,903
    • In immunology: 729
  • Year to date:
    • Site-wide: 116,853
  • Since beginning of last month:
    • Site-wide: 109,842

No cell is an island: circulating T cell:monocyte complexes are markers of immune perturbations

immunology more details view paper
  • Downloaded 801 times
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    • Site-wide: 28,760
    • In immunology: 825
  • Year to date:
    • Site-wide: 60,775
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    • Site-wide: 72,302

Benchmarking predictions of MHC class I restricted T cell epitopes

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  • Downloaded 707 times
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    • Site-wide: 34,230
    • In immunology: 976
  • Year to date:
    • Site-wide: 53,533
  • Since beginning of last month:
    • Site-wide: 88,351

Footprints of antigen processing boost MHC class II natural ligand binding predictions

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  • Downloaded 703 times
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    • Site-wide: 34,540
    • In immunology: 982
  • Year to date:
    • Site-wide: 91,339
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    • Site-wide: 89,585

The challenge of distinguishing cell-cell complexes from singlet cells in non-imaging flow cytometry and single-cell sorting

immunology more details view paper
  • Downloaded 485 times
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    • Site-wide: 54,686
    • In immunology: 1,527
  • Year to date:
    • Site-wide: 40,011
  • Since beginning of last month:
    • Site-wide: 40,596

DAFi: A Directed Recursive Filtering and Clustering Approach to Data-Driven Identification of Cell Populations from Polychromatic Flow Cytometry Data

bioinformatics more details view paper
  • Downloaded 459 times
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    • Site-wide: 58,094
    • In bioinformatics: 5,827
  • Year to date:
    • Site-wide: 84,385
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    • Site-wide: 92,077

TCRMatch: Predicting T-cell receptor specificity based on sequence similarity to previously characterized receptors

immunology more details view paper
  • Downloaded 441 times
  • Download rankings, all-time:
    • Site-wide: 60,585
    • In immunology: 1,687
  • Year to date:
    • Site-wide: 14,153
  • Since beginning of last month:
    • Site-wide: 20,890

Gene Regulatory Cross Networks: Inferring Gene Level Cell-to-Cell Communications of Immune Cells

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  • Downloaded 362 times
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    • Site-wide: 73,234
    • In bioinformatics: 6,894
  • Year to date:
    • Site-wide: 131,406
  • Since beginning of last month:
    • Site-wide: 132,060

A system-view of B. pertussis booster vaccine responses in adults primed with whole-cell vs. acellular vaccine in infancy

systems biology more details view paper
  • Downloaded 248 times
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    • Site-wide: 96,471
    • In systems biology: 2,255
  • Year to date:
    • Site-wide: 61,643
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    • Site-wide: 101,109

Uncovering the cell type specificity of blood sample derived gene signatures using RNA expression data

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  • Downloaded 212 times
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    • Site-wide: 104,612
    • In bioinformatics: 8,861
  • Year to date:
    • Site-wide: 120,993
  • Since beginning of last month:
    • Site-wide: 127,088

Combined assessment of MHC binding and antigen expression improves T cell epitope predictions

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  • Downloaded 159 times
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    • Site-wide: 116,057
    • In bioinformatics: 9,519
  • Year to date:
    • Site-wide: 52,077
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    • Site-wide: 47,964

Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA-DQ2.5

immunology more details view paper
  • Downloaded 157 times
  • Download rankings, all-time:
    • Site-wide: 116,485
    • In immunology: 3,299
  • Year to date:
    • Site-wide: 65,999
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    • Site-wide: 59,927

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