Rxivist logo

Author: Rayan Chikhi

Rankings

  • All-time downloads: 23,256 (rank: 2,575 out of 425,855)
  • Categories:
    • bioinformatics: 18,798 (rank: 156 out of 36,157)
    • genomics: 4,458 (rank: 4,570 (tie) out of 44,540)

Downloads per author, site-wide

Preprints

Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

bioinformatics more details view paper
  • Downloaded 6,865 times
  • Download rankings, all-time:
    • Site-wide: 513 out of 100,819
    • In bioinformatics: 71 out of 9,254
  • Year to date:
    • Site-wide: 15,319 out of 100,819
  • Since beginning of last month:
    • Site-wide: 17,469 out of 100,819

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,458 times
  • Download rankings, all-time:
    • Site-wide: 1,072 out of 100,819
    • In genomics: 214 out of 6,251
  • Year to date:
    • Site-wide: 14,188 out of 100,819
  • Since beginning of last month:
    • Site-wide: 9,341 out of 100,819

Comparative assessment of long-read error-correction software applied to RNA-sequencing data

bioinformatics more details view paper
  • Downloaded 2,574 times
  • Download rankings, all-time:
    • Site-wide: 2,741 out of 100,819
    • In bioinformatics: 473 out of 9,254
  • Year to date:
    • Site-wide: 6,281 out of 100,819
  • Since beginning of last month:
    • Site-wide: 11,042 out of 100,819

AllSome Sequence Bloom Trees

bioinformatics more details view paper
  • Downloaded 1,858 times
  • Download rankings, all-time:
    • Site-wide: 4,745 out of 100,819
    • In bioinformatics: 857 out of 9,254
  • Year to date:
    • Site-wide: 41,111 out of 100,819
  • Since beginning of last month:
    • Site-wide: 33,288 out of 100,819

Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

bioinformatics more details view paper
  • Downloaded 1,576 times
  • Download rankings, all-time:
    • Site-wide: 6,239 out of 100,819
    • In bioinformatics: 1,082 out of 9,254
  • Year to date:
    • Site-wide: 52,066 out of 100,819
  • Since beginning of last month:
    • Site-wide: 50,172 out of 100,819

Data structures based on k-mers for querying large collections of sequencing datasets

bioinformatics more details view paper
  • Downloaded 1,384 times
  • Download rankings, all-time:
    • Site-wide: 7,746 out of 100,819
    • In bioinformatics: 1,327 out of 9,254
  • Year to date:
    • Site-wide: 4,231 out of 100,819
  • Since beginning of last month:
    • Site-wide: 7,454 out of 100,819

Genome scaffolding with PE-contaminated mate-pair libraries

bioinformatics more details view paper
  • Downloaded 994 times
  • Download rankings, all-time:
    • Site-wide: 13,403 out of 100,819
    • In bioinformatics: 2,088 out of 9,254
  • Year to date:
    • Site-wide: 77,603 out of 100,819
  • Since beginning of last month:
    • Site-wide: 70,187 out of 100,819

yacrd and fpa: upstream tools for long-read genome assembly

bioinformatics more details view paper
  • Downloaded 871 times
  • Download rankings, all-time:
    • Site-wide: 16,554 out of 100,819
    • In bioinformatics: 2,500 out of 9,254
  • Year to date:
    • Site-wide: 16,031 out of 100,819
  • Since beginning of last month:
    • Site-wide: 49,586 out of 100,819

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets

bioinformatics more details view paper
  • Downloaded 802 times
  • Download rankings, all-time:
    • Site-wide: 18,812 out of 100,819
    • In bioinformatics: 2,788 out of 9,254
  • Year to date:
    • Site-wide: 3,558 out of 100,819
  • Since beginning of last month:
    • Site-wide: 5,655 out of 100,819

Petabase-scale sequence alignment catalyses viral discovery

bioinformatics more details view paper
  • Downloaded 700 times
  • Download rankings, all-time:
    • Site-wide: 23,052 out of 100,819
    • In bioinformatics: 3,243 out of 9,254
  • Year to date:
    • Site-wide: 4,401 out of 100,819
  • Since beginning of last month:
    • Site-wide: None out of 100,819

RecoverY: K-mer based read classification for Y-chromosome specific sequencing and assembly

bioinformatics more details view paper
  • Downloaded 665 times
  • Download rankings, all-time:
    • Site-wide: 24,908 out of 100,819
    • In bioinformatics: 3,438 out of 9,254
  • Year to date:
    • Site-wide: 72,329 out of 100,819
  • Since beginning of last month:
    • Site-wide: 75,130 out of 100,819

Metagenomics Strain Resolution on Assembly Graphs

bioinformatics more details view paper
  • Downloaded 509 times
  • Download rankings, all-time:
    • Site-wide: 35,321 out of 100,819
    • In bioinformatics: 4,453 out of 9,254
  • Year to date:
    • Site-wide: 7,146 out of 100,819
  • Since beginning of last month:
    • Site-wide: 432 out of 100,819

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News

  • 20 Oct 2020: Support for sorting preprints using Twitter activity has been removed, at least temporarily, until a new source of social media activity data becomes available.
  • 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
  • 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
  • 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
  • 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
  • 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
  • 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
  • 22 Jan 2019: Nature just published an article about Rxivist and our data.
  • 13 Jan 2019: The Rxivist preprint is live!