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Author: Rayan Chikhi

Rankings

  • All-time downloads: 26,007 (rank: 5,927 )
  • Categories:
    • bioinformatics: 21,402 (rank: 142 )
    • genomics: 4,605 (rank: 4,931 (tie) )

Downloads per author, site-wide

Preprints

kmtricks: Efficient construction of Bloom filters for large sequencing data collections

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Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

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  • Downloaded 6,986 times
  • Download rankings, all-time:
    • Site-wide: 1,187
    • In bioinformatics: 78
  • Year to date:
    • Site-wide: 27,902
  • Since beginning of last month:
    • Site-wide: 19,520

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,605 times
  • Download rankings, all-time:
    • Site-wide: 2,095
    • In genomics: 226
  • Year to date:
    • Site-wide: 18,291
  • Since beginning of last month:
    • Site-wide: 28,398

Comparative assessment of long-read error-correction software applied to RNA-sequencing data

bioinformatics more details view paper
  • Downloaded 2,805 times
  • Download rankings, all-time:
    • Site-wide: 4,240
    • In bioinformatics: 460
  • Year to date:
    • Site-wide: 11,737
  • Since beginning of last month:
    • Site-wide: 8,708

Data structures based on k-mers for querying large collections of sequencing datasets

bioinformatics more details view paper
  • Downloaded 2,006 times
  • Download rankings, all-time:
    • Site-wide: 6,926
    • In bioinformatics: 842
  • Year to date:
    • Site-wide: 4,867
  • Since beginning of last month:
    • Site-wide: 10,078

AllSome Sequence Bloom Trees

bioinformatics more details view paper
  • Downloaded 1,907 times
  • Download rankings, all-time:
    • Site-wide: 7,482
    • In bioinformatics: 922
  • Year to date:
    • Site-wide: 61,353
  • Since beginning of last month:
    • Site-wide: 50,721

Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

bioinformatics more details view paper
  • Downloaded 1,646 times
  • Download rankings, all-time:
    • Site-wide: 9,377
    • In bioinformatics: 1,152
  • Year to date:
    • Site-wide: 38,466
  • Since beginning of last month:
    • Site-wide: 47,814

Petabase-scale sequence alignment catalyses viral discovery

bioinformatics more details view paper
  • Downloaded 1,480 times
  • Download rankings, all-time:
    • Site-wide: 10,941
    • In bioinformatics: 1,353
  • Year to date:
    • Site-wide: 4,236
  • Since beginning of last month:
    • Site-wide: 7,458

Genome scaffolding with PE-contaminated mate-pair libraries

bioinformatics more details view paper
  • Downloaded 1,028 times
  • Download rankings, all-time:
    • Site-wide: 18,976
    • In bioinformatics: 2,290
  • Year to date:
    • Site-wide: 80,084
  • Since beginning of last month:
    • Site-wide: 90,569

Metagenomics Strain Resolution on Assembly Graphs

bioinformatics more details view paper
  • Downloaded 1,016 times
  • Download rankings, all-time:
    • Site-wide: 19,258
    • In bioinformatics: 2,336
  • Year to date:
    • Site-wide: 2,979
  • Since beginning of last month:
    • Site-wide: 4,571

yacrd and fpa: upstream tools for long-read genome assembly

bioinformatics more details view paper
  • Downloaded 931 times
  • Download rankings, all-time:
    • Site-wide: 21,833
    • In bioinformatics: 2,616
  • Year to date:
    • Site-wide: 41,793
  • Since beginning of last month:
    • Site-wide: 42,942

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets

bioinformatics more details view paper
  • Downloaded 899 times
  • Download rankings, all-time:
    • Site-wide: 22,954
    • In bioinformatics: 2,757
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

RecoverY: K-mer based read classification for Y-chromosome specific sequencing and assembly

bioinformatics more details view paper
  • Downloaded 698 times
  • Download rankings, all-time:
    • Site-wide: 32,709
    • In bioinformatics: 3,708
  • Year to date:
    • Site-wide: 100,667
  • Since beginning of last month:
    • Site-wide: 92,517

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