Author: Rayan Chikhi

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Preprints

kmtricks: Efficient construction of Bloom filters for large sequencing data collections

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Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

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Computational Pan-Genomics: Status, Promises and Challenges

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Comparative assessment of long-read error-correction software applied to RNA-sequencing data

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Data structures based on k-mers for querying large collections of sequencing datasets

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AllSome Sequence Bloom Trees

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Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

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Petabase-scale sequence alignment catalyses viral discovery

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Genome scaffolding with PE-contaminated mate-pair libraries

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Metagenomics Strain Resolution on Assembly Graphs

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yacrd and fpa: upstream tools for long-read genome assembly

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REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets

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RecoverY: K-mer based read classification for Y-chromosome specific sequencing and assembly

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