Author: Rayan Chikhi
- ORCiD: http://orcid.org/0000-0003-1099-8735
- Most recently observed institution: Institut Pasteur
Rankings
- All-time downloads: 26,007 (rank: 5,927 )
- Categories:
- bioinformatics: 21,402 (rank: 142 )
- genomics: 4,605 (rank: 4,931 (tie) )
Downloads per author, site-wide
Preprints
kmtricks: Efficient construction of Bloom filters for large sequencing data collections
bioinformatics more details view paperNo download data for this paper yet.
Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software
bioinformatics more details view paper- Downloaded 6,986 times
- Download rankings, all-time:
- Site-wide: 1,187
- In bioinformatics: 78
- Year to date:
- Site-wide: 27,902
- Since beginning of last month:
- Site-wide: 19,520
Computational Pan-Genomics: Status, Promises and Challenges
genomics more details view paper- Downloaded 4,605 times
- Download rankings, all-time:
- Site-wide: 2,095
- In genomics: 226
- Year to date:
- Site-wide: 18,291
- Since beginning of last month:
- Site-wide: 28,398
Comparative assessment of long-read error-correction software applied to RNA-sequencing data
bioinformatics more details view paper- Downloaded 2,805 times
- Download rankings, all-time:
- Site-wide: 4,240
- In bioinformatics: 460
- Year to date:
- Site-wide: 11,737
- Since beginning of last month:
- Site-wide: 8,708
Data structures based on k-mers for querying large collections of sequencing datasets
bioinformatics more details view paper- Downloaded 2,006 times
- Download rankings, all-time:
- Site-wide: 6,926
- In bioinformatics: 842
- Year to date:
- Site-wide: 4,867
- Since beginning of last month:
- Site-wide: 10,078
AllSome Sequence Bloom Trees
bioinformatics more details view paper- Downloaded 1,907 times
- Download rankings, all-time:
- Site-wide: 7,482
- In bioinformatics: 922
- Year to date:
- Site-wide: 61,353
- Since beginning of last month:
- Site-wide: 50,721
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
bioinformatics more details view paper- Downloaded 1,646 times
- Download rankings, all-time:
- Site-wide: 9,377
- In bioinformatics: 1,152
- Year to date:
- Site-wide: 38,466
- Since beginning of last month:
- Site-wide: 47,814
Petabase-scale sequence alignment catalyses viral discovery
bioinformatics more details view paper- Downloaded 1,480 times
- Download rankings, all-time:
- Site-wide: 10,941
- In bioinformatics: 1,353
- Year to date:
- Site-wide: 4,236
- Since beginning of last month:
- Site-wide: 7,458
Genome scaffolding with PE-contaminated mate-pair libraries
bioinformatics more details view paper- Downloaded 1,028 times
- Download rankings, all-time:
- Site-wide: 18,976
- In bioinformatics: 2,290
- Year to date:
- Site-wide: 80,084
- Since beginning of last month:
- Site-wide: 90,569
Metagenomics Strain Resolution on Assembly Graphs
bioinformatics more details view paper- Downloaded 1,016 times
- Download rankings, all-time:
- Site-wide: 19,258
- In bioinformatics: 2,336
- Year to date:
- Site-wide: 2,979
- Since beginning of last month:
- Site-wide: 4,571
yacrd and fpa: upstream tools for long-read genome assembly
bioinformatics more details view paper- Downloaded 931 times
- Download rankings, all-time:
- Site-wide: 21,833
- In bioinformatics: 2,616
- Year to date:
- Site-wide: 41,793
- Since beginning of last month:
- Site-wide: 42,942
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets
bioinformatics more details view paper- Downloaded 899 times
- Download rankings, all-time:
- Site-wide: 22,954
- In bioinformatics: 2,757
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: None
RecoverY: K-mer based read classification for Y-chromosome specific sequencing and assembly
bioinformatics more details view paper- Downloaded 698 times
- Download rankings, all-time:
- Site-wide: 32,709
- In bioinformatics: 3,708
- Year to date:
- Site-wide: 100,667
- Since beginning of last month:
- Site-wide: 92,517
PanLingua
News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
- 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
- 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
- 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
- 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
- 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
- 22 Jan 2019: Nature just published an article about Rxivist and our data.
- 13 Jan 2019: The Rxivist preprint is live!