Author: Qunhua Li

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Preprints

Measuring the reproducibility and quality of Hi-C data

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  • Site-wide: 4,294
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  • Site-wide: 77,792
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  • Site-wide: 92,996

HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient

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  • Site-wide: 7,999
  • In bioinformatics: 1,011
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  • Site-wide: 82,886

Hierarchical Domain Structure Reveals the Divergence of Activity among TADs and Boundaries

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  • In bioinformatics: 2,164
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RNAseq studies reveal distinct transcriptional response to vitamin A deficiency in small intestine versus colon, uncovering novel vitamin A-regulated genes

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  • Site-wide: 18,917
  • In physiology: 61
• Year to date:
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An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

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  • Site-wide: 22,050
  • In genomics: 2,204
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S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data

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  • In bioinformatics: 2,737
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powerTCR: a model-based approach to comparative analysis of the clone size distribution of the T cell receptor repertoire

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  • In immunology: 1,158
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  • Site-wide: 102,997
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  • Site-wide: 109,201

Condition-adaptive fused graphical lasso (CFGL): an adaptive procedure for inferring condition-specific gene co-expression network

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  • In bioinformatics: 6,138
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Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of mouse hematopoietic cells

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  • In genomics: 5,313
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High-dimensional association detection in large scale genomic data

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  • Site-wide: 88,670
  • In bioinformatics: 7,903
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A statistical framework for measuring reproducibility and replicability of high-throughput experiments from multiple sources

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  • Site-wide: 97,415
  • In bioinformatics: 8,438
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  • Site-wide: 117,658
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  • Site-wide: 108,096

Detecting local changes in chromatin architecture with false discovery control

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  • Site-wide: 112,916
  • In genomics: 6,330
• Year to date:
  • Site-wide: 118,324
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  • Site-wide: 58,633