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Author: Joseph Hughes

Rankings

  • All-time downloads: 10,881 (rank: 8,625 (tie) out of 448,974)
  • Categories:
    • bioinformatics: 1,918 (rank: 6,603 (tie) out of 36,834)
    • evolutionary biology: 467 (rank: 12,440 (tie) out of 22,147)
    • microbiology: 8,496 (rank: 1,171 out of 52,210)

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Preprints

Remdesivir induced viral RNA and subgenomic RNA suppression, and evolution of viral variants in SARS-CoV-2 infected patients.

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The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity

microbiology more details view paper
  • Downloaded 7,647 times
  • Download rankings, all-time:
    • Site-wide: 455 out of 106,159
    • In microbiology: 82 out of 9,238
  • Year to date:
    • Site-wide: 176 out of 106,159
  • Since beginning of last month:
    • Site-wide: 8 out of 106,159

GLUE: A flexible software system for virus sequence data

bioinformatics more details view paper
  • Downloaded 1,011 times
  • Download rankings, all-time:
    • Site-wide: 13,641 out of 106,159
    • In bioinformatics: 2,096 out of 9,474
  • Year to date:
    • Site-wide: 38,838 out of 106,159
  • Since beginning of last month:
    • Site-wide: 39,122 out of 106,159

Human Cytomegalovirus Genomes Sequenced Directly from Clinical Material: Variation, Multiple-Strain Infection, Recombination and Mutation

microbiology more details view paper
  • Downloaded 510 times
  • Download rankings, all-time:
    • Site-wide: 36,857 out of 106,159
    • In microbiology: 2,600 out of 9,238
  • Year to date:
    • Site-wide: 48,957 out of 106,159
  • Since beginning of last month:
    • Site-wide: 75,677 out of 106,159

Global genetic diversity of small ruminant lentiviruses, and a hypothesis regarding their pandemic spread.

evolutionary biology more details view paper
  • Downloaded 467 times
  • Download rankings, all-time:
    • Site-wide: 40,981 out of 106,159
    • In evolutionary biology: 2,716 out of 6,128
  • Year to date:
    • Site-wide: 54,750 out of 106,159
  • Since beginning of last month:
    • Site-wide: 36,089 out of 106,159

DisCVR: Rapid viral diagnosis from high-throughput sequencing data

bioinformatics more details view paper
  • Downloaded 358 times
  • Download rankings, all-time:
    • Site-wide: 54,227 out of 106,159
    • In bioinformatics: 6,104 out of 9,474
  • Year to date:
    • Site-wide: 65,070 out of 106,159
  • Since beginning of last month:
    • Site-wide: 66,870 out of 106,159

TRIM69 inhibits Vesicular Stomatitis Indiana Virus (VSIV)

microbiology more details view paper
  • Downloaded 339 times
  • Download rankings, all-time:
    • Site-wide: 57,087 out of 106,159
    • In microbiology: 4,368 out of 9,238
  • Year to date:
    • Site-wide: 58,007 out of 106,159
  • Since beginning of last month:
    • Site-wide: 53,297 out of 106,159

Synonymous Dinucleotide Usage: A Codon-Aware Metric for Quantifying Dinucleotide Representation in Viruses

bioinformatics more details view paper
  • Downloaded 279 times
  • Download rankings, all-time:
    • Site-wide: 66,692 out of 106,159
    • In bioinformatics: 6,994 out of 9,474
  • Year to date:
    • Site-wide: 20,529 out of 106,159
  • Since beginning of last month:
    • Site-wide: 59,786 out of 106,159

Database-integrated genome screening (DIGS): exploring genomes heuristically using sequence similarity search tools and a relational database.

bioinformatics more details view paper
  • Downloaded 270 times
  • Download rankings, all-time:
    • Site-wide: 68,121 out of 106,159
    • In bioinformatics: 7,102 out of 9,474
  • Year to date:
    • Site-wide: 77,799 out of 106,159
  • Since beginning of last month:
    • Site-wide: 66,548 out of 106,159

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