Rxivist logo

Author: Tuuli Lappalainen

  • ORCiD: http://orcid.org/0000-0002-7746-8109
  • Most recently observed institution: New York Genome Center, New York, NY, USA; Department of Systems Biology, Columbia University, New York, NY, USA

Rankings

  • All-time downloads: 54,900 (rank: 2,517 )
  • Categories:
    • bioinformatics: 4,689 (rank: 2,534 )
    • genetics: 20,175 (rank: 476 )
    • genomics: 29,030 (rank: 310 )
    • infectious diseases: 1,006 (rank: 20,891 (tie) )

Downloads per author, site-wide

Preprints

Integrative approach identifies SLC6A20 and CXCR6 as putative causal genes for the COVID-19 GWAS signal in the 3p21.31 locus

genetic and genomic medicine more details view paper

No download data for this paper yet.

Discovery of target genes and pathways of blood trait loci using pooled CRISPR screens and single cell RNA sequencing

genomics more details view paper

No download data for this paper yet.

Tools and best practices for allelic expression analysis

genomics more details view paper
  • Downloaded 8,483 times
  • Download rankings, all-time:
    • Site-wide: 988
    • In genomics: 83
  • Year to date:
    • Site-wide: 14,235
  • Since beginning of last month:
    • Site-wide: 9,172

The GTEx Consortium atlas of genetic regulatory effects across human tissues

genetics more details view paper
  • Downloaded 8,261 times
  • Download rankings, all-time:
    • Site-wide: 1,026
    • In genetics: 29
  • Year to date:
    • Site-wide: 4,078
  • Since beginning of last month:
    • Site-wide: 5,302

Local genetic effects on gene expression across 44 human tissues

genomics more details view paper
  • Downloaded 4,452 times
  • Download rankings, all-time:
    • Site-wide: 2,343
    • In genomics: 257
  • Year to date:
    • Site-wide: 57,874
  • Since beginning of last month:
    • Site-wide: 53,073

Modified penetrance of coding variants by cis-regulatory variation shapes human traits

genetics more details view paper
  • Downloaded 3,957 times
  • Download rankings, all-time:
    • Site-wide: 2,780
    • In genetics: 105
  • Year to date:
    • Site-wide: 73,117
  • Since beginning of last month:
    • Site-wide: 63,397

Exploiting the GTEx resources to decipher the mechanisms at GWAS loci

genetics more details view paper
  • Downloaded 3,498 times
  • Download rankings, all-time:
    • Site-wide: 3,330
    • In genetics: 130
  • Year to date:
    • Site-wide: 4,667
  • Since beginning of last month:
    • Site-wide: 5,089

Distant regulatory effects of genetic variation in multiple human tissues

genomics more details view paper
  • Downloaded 2,768 times
  • Download rankings, all-time:
    • Site-wide: 4,635
    • In genomics: 515
  • Year to date:
    • Site-wide: 65,932
  • Since beginning of last month:
    • Site-wide: 67,286

Cell type specific genetic regulation of gene expression across human tissues

genomics more details view paper
  • Downloaded 2,527 times
  • Download rankings, all-time:
    • Site-wide: 5,297
    • In genomics: 595
  • Year to date:
    • Site-wide: 16,831
  • Since beginning of last month:
    • Site-wide: 19,538

Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change

bioinformatics more details view paper
  • Downloaded 2,268 times
  • Download rankings, all-time:
    • Site-wide: 6,236
    • In bioinformatics: 718
  • Year to date:
    • Site-wide: 47,333
  • Since beginning of last month:
    • Site-wide: 67,803

Transcriptome variation in human tissues revealed by long-read sequencing

genomics more details view paper
  • Downloaded 2,188 times
  • Download rankings, all-time:
    • Site-wide: 6,551
    • In genomics: 727
  • Year to date:
    • Site-wide: 426
  • Since beginning of last month:
    • Site-wide: 1,371

Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 2,061 times
  • Download rankings, all-time:
    • Site-wide: 7,155
    • In genomics: 791
  • Year to date:
    • Site-wide: 65,933
  • Since beginning of last month:
    • Site-wide: 43,844

Assessing allele specific expression across multiple tissues from RNA-seq read data

bioinformatics more details view paper
  • Downloaded 1,974 times
  • Download rankings, all-time:
    • Site-wide: 7,621
    • In bioinformatics: 916
  • Year to date:
    • Site-wide: 111,225
  • Since beginning of last month:
    • Site-wide: 96,983

Diverse transcriptomic signatures across human tissues identify functional rare genetic variation

genomics more details view paper
  • Downloaded 1,914 times
  • Download rankings, all-time:
    • Site-wide: 7,979
    • In genomics: 871
  • Year to date:
    • Site-wide: 31,999
  • Since beginning of last month:
    • Site-wide: 42,370

Rare variant phasing and haplotypic expression from RNA-sequencing with phASER

genetics more details view paper
  • Downloaded 1,801 times
  • Download rankings, all-time:
    • Site-wide: 8,757
    • In genetics: 411
  • Year to date:
    • Site-wide: 23,694
  • Since beginning of last month:
    • Site-wide: 11,858

Quantifying genetic regulatory variation in human populations improves transcriptome analysis in rare disease patients

genomics more details view paper
  • Downloaded 1,414 times
  • Download rankings, all-time:
    • Site-wide: 12,525
    • In genomics: 1,353
  • Year to date:
    • Site-wide: 49,788
  • Since beginning of last month:
    • Site-wide: 35,479

A vast resource of allelic expression data spanning human tissues

genomics more details view paper
  • Downloaded 1,199 times
  • Download rankings, all-time:
    • Site-wide: 16,094
    • In genomics: 1,655
  • Year to date:
    • Site-wide: 49,022
  • Since beginning of last month:
    • Site-wide: 64,566

Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

genomics more details view paper
  • Downloaded 1,194 times
  • Download rankings, all-time:
    • Site-wide: 16,208
    • In genomics: 1,663
  • Year to date:
    • Site-wide: 101,689
  • Since beginning of last month:
    • Site-wide: 108,713

Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations

genetics more details view paper
  • Downloaded 1,031 times
  • Download rankings, all-time:
    • Site-wide: 20,109
    • In genetics: 967
  • Year to date:
    • Site-wide: 95,228
  • Since beginning of last month:
    • Site-wide: 121,310

Genetic and non-genetic factors affecting the expression of COVID-19 relevant genes in the large airway epithelium

infectious diseases more details view paper
  • Downloaded 1,006 times
  • Download rankings, all-time:
    • Site-wide: 20,833
    • In infectious diseases: 1,723
  • Year to date:
    • Site-wide: 12,101
  • Since beginning of last month:
    • Site-wide: 7,701

Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

genetics more details view paper
  • Downloaded 875 times
  • Download rankings, all-time:
    • Site-wide: 25,496
    • In genetics: 1,229
  • Year to date:
    • Site-wide: 48,861
  • Since beginning of last month:
    • Site-wide: 64,992

A polyclonal allelic expression assay for detecting regulatory effects of transcript variants

genetics more details view paper
  • Downloaded 752 times
  • Download rankings, all-time:
    • Site-wide: 31,435
    • In genetics: 1,521
  • Year to date:
    • Site-wide: 96,497
  • Since beginning of last month:
    • Site-wide: 116,687

An autoimmune disease risk variant has a trans master regulatory effect mediated by IRF1 under immune stimulation

genomics more details view paper
  • Downloaded 653 times
  • Download rankings, all-time:
    • Site-wide: 38,109
    • In genomics: 3,214
  • Year to date:
    • Site-wide: 47,796
  • Since beginning of last month:
    • Site-wide: 30,174

RecNW: A fast pairwise aligner for targeted sequencing

bioinformatics more details view paper
  • Downloaded 447 times
  • Download rankings, all-time:
    • Site-wide: 59,791
    • In bioinformatics: 5,953
  • Year to date:
    • Site-wide: 66,274
  • Since beginning of last month:
    • Site-wide: 62,534

EdiTyper: a high-throughput tool for analysis of targeted sequencing data from genome editing experiments

genomics more details view paper
  • Downloaded 177 times
  • Download rankings, all-time:
    • Site-wide: 112,205
    • In genomics: 6,355
  • Year to date:
    • Site-wide: 106,064
  • Since beginning of last month:
    • Site-wide: 102,663

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News