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Author: Joel Armstrong

Rankings

  • All-time downloads: 27,264 (rank: 1,552 out of 361,786)
  • Categories:
    • bioinformatics: 21,564 (rank: 105 out of 31,267)
    • evolutionary biology: 470 (rank: 10,095 (tie) out of 18,767)
    • genomics: 5,230 (rank: 3,177 out of 39,123)

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Preprints

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

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Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

bioinformatics more details view paper
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    • In bioinformatics: 75 out of 8,053
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Telomere-to-telomere assembly of a complete human X chromosome

bioinformatics more details view paper
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Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

genomics more details view paper
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Chromosome assembly of large and complex genomes using multiple references

bioinformatics more details view paper
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    • In bioinformatics: 831 out of 8,053
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    • Site-wide: 48,325 out of 84,023

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

bioinformatics more details view paper
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Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
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The genome of C57BL/6J "Eve", the mother of the laboratory mouse genome reference strain

genomics more details view paper
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    • Site-wide: 18,301 out of 84,023

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling

genomics more details view paper
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    • Site-wide: 23,070 out of 84,023
    • In genomics: 2,566 out of 5,424
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    • Site-wide: 79,812 out of 84,023
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    • Site-wide: 70,799 out of 84,023

KRAB Zinc Finger Proteins coordinate across evolutionary time scales to battle retroelements

evolutionary biology more details view paper
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    • Site-wide: 31,493 out of 84,023
    • In evolutionary biology: 2,192 out of 5,215
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    • Site-wide: 26,688 out of 84,023
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    • Site-wide: 24,928 out of 84,023

Predicting transfer RNA gene activity from sequence and genome context

bioinformatics more details view paper
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    • Site-wide: 31,577 out of 84,023
    • In bioinformatics: 4,085 out of 8,053
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