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Author: Paul C Boutros

Rankings

  • All-time downloads: 60,044 (rank: 2,286 )
  • Categories:
    • bioinformatics: 13,242 (rank: 470 )
    • cancer biology: 28,427 (rank: 22 )
    • genomics: 18,375 (rank: 614 )

Downloads per author, site-wide

Preprints

The evolutionary history of 2,658 cancers

cancer biology more details view paper
  • Downloaded 9,487 times
  • Download rankings, all-time:
    • Site-wide: 853
    • In cancer biology: 8
  • Year to date:
    • Site-wide: 27,285
  • Since beginning of last month:
    • Site-wide: 23,220

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

genomics more details view paper
  • Downloaded 6,437 times
  • Download rankings, all-time:
    • Site-wide: 1,396
    • In genomics: 128
  • Year to date:
    • Site-wide: 3,906
  • Since beginning of last month:
    • Site-wide: 2,034

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

cancer biology more details view paper
  • Downloaded 5,910 times
  • Download rankings, all-time:
    • Site-wide: 1,572
    • In cancer biology: 20
  • Year to date:
    • Site-wide: 2,713
  • Since beginning of last month:
    • Site-wide: 1,878

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 5,734 times
  • Download rankings, all-time:
    • Site-wide: 1,653
    • In genomics: 153
  • Year to date:
    • Site-wide: 7,033
  • Since beginning of last month:
    • Site-wide: 11,258

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,619 times
  • Download rankings, all-time:
    • Site-wide: 4,984
    • In bioinformatics: 543
  • Year to date:
    • Site-wide: 48,245
  • Since beginning of last month:
    • Site-wide: 33,668

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,459 times
  • Download rankings, all-time:
    • Site-wide: 5,495
    • In cancer biology: 85
  • Year to date:
    • Site-wide: 31,115
  • Since beginning of last month:
    • Site-wide: 23,037

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,409 times
  • Download rankings, all-time:
    • Site-wide: 5,660
    • In genomics: 647
  • Year to date:
    • Site-wide: 94,076
  • Since beginning of last month:
    • Site-wide: 86,689

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,163 times
  • Download rankings, all-time:
    • Site-wide: 6,629
    • In genomics: 738
  • Year to date:
    • Site-wide: 77,940
  • Since beginning of last month:
    • Site-wide: 52,445

Sex Differences in Oncogenic Mutational Processes

cancer biology more details view paper
  • Downloaded 2,111 times
  • Download rankings, all-time:
    • Site-wide: 6,871
    • In cancer biology: 107
  • Year to date:
    • Site-wide: 72,358
  • Since beginning of last month:
    • Site-wide: 86,189

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,990 times
  • Download rankings, all-time:
    • Site-wide: 7,488
    • In bioinformatics: 904
  • Year to date:
    • Site-wide: 53,506
  • Since beginning of last month:
    • Site-wide: 48,610

The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact

cancer biology more details view paper
  • Downloaded 1,843 times
  • Download rankings, all-time:
    • Site-wide: 8,412
    • In cancer biology: 144
  • Year to date:
    • Site-wide: 30,975
  • Since beginning of last month:
    • Site-wide: 37,181

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
  • Downloaded 1,443 times
  • Download rankings, all-time:
    • Site-wide: 12,047
    • In cancer biology: 250
  • Year to date:
    • Site-wide: 79,618
  • Since beginning of last month:
    • Site-wide: 74,123

The Origins and Consequences of Localized and Global Somatic Hypermutation

cancer biology more details view paper
  • Downloaded 1,421 times
  • Download rankings, all-time:
    • Site-wide: 12,370
    • In cancer biology: 262
  • Year to date:
    • Site-wide: 29,930
  • Since beginning of last month:
    • Site-wide: 27,502

Kronos: a workflow assembler for genome analytics and informatics

bioinformatics more details view paper
  • Downloaded 1,376 times
  • Download rankings, all-time:
    • Site-wide: 12,970
    • In bioinformatics: 1,579
  • Year to date:
    • Site-wide: 86,737
  • Since beginning of last month:
    • Site-wide: 105,193

Integrative pathway enrichment analysis of multivariate omics data

bioinformatics more details view paper
  • Downloaded 1,286 times
  • Download rankings, all-time:
    • Site-wide: 14,382
    • In bioinformatics: 1,755
  • Year to date:
    • Site-wide: 91,503
  • Since beginning of last month:
    • Site-wide: 104,029

Quantifying the Influence of Mutation Detection on Tumour Subclonal Reconstruction

cancer biology more details view paper
  • Downloaded 1,198 times
  • Download rankings, all-time:
    • Site-wide: 16,004
    • In cancer biology: 353
  • Year to date:
    • Site-wide: 44,675
  • Since beginning of last month:
    • Site-wide: 48,731

Fast Nonnegative Matrix Factorization and Applications to Pattern Extraction, Deconvolution and Imputation

bioinformatics more details view paper
  • Downloaded 1,044 times
  • Download rankings, all-time:
    • Site-wide: 19,648
    • In bioinformatics: 2,339
  • Year to date:
    • Site-wide: 39,029
  • Since beginning of last month:
    • Site-wide: 37,581

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 932 times
  • Download rankings, all-time:
    • Site-wide: 23,126
    • In bioinformatics: 2,740
  • Year to date:
    • Site-wide: 93,856
  • Since beginning of last month:
    • Site-wide: 109,980

BPG: Seamless, Automated and Interactive Visualization of Scientific Data

bioinformatics more details view paper
  • Downloaded 856 times
  • Download rankings, all-time:
    • Site-wide: 26,084
    • In bioinformatics: 3,056
  • Year to date:
    • Site-wide: 94,584
  • Since beginning of last month:
    • Site-wide: 93,793

Cis-Regulatory Element Hijacking by Structural Variants Overshadows Topological Changes in Primary Prostate Cancer

cancer biology more details view paper
  • Downloaded 700 times
  • Download rankings, all-time:
    • Site-wide: 34,519
    • In cancer biology: 932
  • Year to date:
    • Site-wide: 1,766
  • Since beginning of last month:
    • Site-wide: 11,253

Prediction of early breast cancer patient survival using ensembles of hypoxia signatures

bioinformatics more details view paper
  • Downloaded 671 times
  • Download rankings, all-time:
    • Site-wide: 36,584
    • In bioinformatics: 4,051
  • Year to date:
    • Site-wide: 81,053
  • Since beginning of last month:
    • Site-wide: 57,852

Modeling the MYC-driven normal-to-tumour switch in breast cancer.

cancer biology more details view paper
  • Downloaded 594 times
  • Download rankings, all-time:
    • Site-wide: 42,683
    • In cancer biology: 1,184
  • Year to date:
    • Site-wide: 95,617
  • Since beginning of last month:
    • Site-wide: 106,306

Divergent mutational processes distinguish hypoxic and normoxic tumours

cancer biology more details view paper
  • Downloaded 577 times
  • Download rankings, all-time:
    • Site-wide: 44,328
    • In cancer biology: 1,233
  • Year to date:
    • Site-wide: 107,864
  • Since beginning of last month:
    • Site-wide: 86,669

Differing total mRNA expression shapes the molecular and clinical phenotype of cancer

genomics more details view paper
  • Downloaded 568 times
  • Download rankings, all-time:
    • Site-wide: 45,138
    • In genomics: 3,622
  • Year to date:
    • Site-wide: 10,014
  • Since beginning of last month:
    • Site-wide: 7,624

DreamAI: algorithm for the imputation of proteomics data

bioinformatics more details view paper
  • Downloaded 568 times
  • Download rankings, all-time:
    • Site-wide: 45,149
    • In bioinformatics: 4,786
  • Year to date:
    • Site-wide: 12,744
  • Since beginning of last month:
    • Site-wide: 17,539

Network-Based Biomarkers Enable Cross-Disease Biomarker Discovery

bioinformatics more details view paper
  • Downloaded 548 times
  • Download rankings, all-time:
    • Site-wide: 47,246
    • In bioinformatics: 4,951
  • Year to date:
    • Site-wide: 74,411
  • Since beginning of last month:
    • Site-wide: 90,673

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 511 times
  • Download rankings, all-time:
    • Site-wide: 51,264
    • In genomics: 4,000
  • Year to date:
    • Site-wide: 121,253
  • Since beginning of last month:
    • Site-wide: 115,649

Accurate Reference-Free Somatic Variant-Calling by Integrating Genomic, Sequencing and Population Data

bioinformatics more details view paper
  • Downloaded 502 times
  • Download rankings, all-time:
    • Site-wide: 52,352
    • In bioinformatics: 5,356
  • Year to date:
    • Site-wide: 65,111
  • Since beginning of last month:
    • Site-wide: 66,755

Age Influences on the Molecular Presentation of Tumours

cancer biology more details view paper
  • Downloaded 354 times
  • Download rankings, all-time:
    • Site-wide: 74,386
    • In cancer biology: 2,178
  • Year to date:
    • Site-wide: 18,471
  • Since beginning of last month:
    • Site-wide: 76,515

Subnetwork-based prognostic biomarkers exhibit performance and robustness superior to gene-based biomarkers in breast cancer

bioinformatics more details view paper
  • Downloaded 314 times
  • Download rankings, all-time:
    • Site-wide: 82,001
    • In bioinformatics: 7,453
  • Year to date:
    • Site-wide: 120,783
  • Since beginning of last month:
    • Site-wide: 105,671

Valection: Design Optimization for Validation and Verification Studies

bioinformatics more details view paper
  • Downloaded 279 times
  • Download rankings, all-time:
    • Site-wide: 89,268
    • In bioinformatics: 7,915
  • Year to date:
    • Site-wide: 131,375
  • Since beginning of last month:
    • Site-wide: 128,046

Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection

genomics more details view paper
  • Downloaded 277 times
  • Download rankings, all-time:
    • Site-wide: 89,870
    • In genomics: 5,637
  • Year to date:
    • Site-wide: 129,102
  • Since beginning of last month:
    • Site-wide: 116,642

Identifying TCDD-resistance genes via murine and rat comparative genomics and transcriptomics

genomics more details view paper
  • Downloaded 276 times
  • Download rankings, all-time:
    • Site-wide: 89,951
    • In genomics: 5,647
  • Year to date:
    • Site-wide: 113,949
  • Since beginning of last month:
    • Site-wide: 103,820

HPCI: A Perl module for writing cluster-portable bioinformatics pipelines

bioinformatics more details view paper
  • Downloaded 257 times
  • Download rankings, all-time:
    • Site-wide: 94,254
    • In bioinformatics: 8,234
  • Year to date:
    • Site-wide: 113,702
  • Since beginning of last month:
    • Site-wide: 124,866

NOX4 links metabolic regulation in pancreatic cancer to endoplasmic reticulum redox vulnerability and dependence on PRDX4

cancer biology more details view paper
  • Downloaded 193 times
  • Download rankings, all-time:
    • Site-wide: 108,345
    • In cancer biology: 3,312
  • Year to date:
    • Site-wide: 34,043
  • Since beginning of last month:
    • Site-wide: 29,154

Ancestry Influences on the Molecular Presentation of Tumours

cancer biology more details view paper
  • Downloaded 137 times
  • Download rankings, all-time:
    • Site-wide: 120,034
    • In cancer biology: 3,713
  • Year to date:
    • Site-wide: 89,353
  • Since beginning of last month:
    • Site-wide: 78,727

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