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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,896 bioRxiv papers from 321,557 authors.

Author: Paul C. Boutros

Rankings

  • All-time downloads: 46,660 (rank: 381 out of 321,602)
  • Categories:
    • bioinformatics: 10,663 (rank: 326 out of 27,847)
    • cancer biology: 22,395 (rank: 22 out of 21,229)
    • genomics: 13,602 (rank: 717 out of 35,811)

Downloads per author, site-wide

Preprints

The evolutionary history of 2,658 cancers

cancer biology more details view paper
  • Downloaded 8,878 times
  • Download rankings, all-time:
    • Site-wide: 187 out of 73,896
    • In cancer biology: 6 out of 2,532
  • Year to date:
    • Site-wide: 260 out of 73,896
  • Since beginning of last month:
    • Site-wide: 260 out of 73,896

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

genomics more details view paper
  • Downloaded 5,068 times
  • Download rankings, all-time:
    • Site-wide: 492 out of 73,896
    • In genomics: 121 out of 4,893
  • Year to date:
    • Site-wide: 612 out of 73,896
  • Since beginning of last month:
    • Site-wide: 612 out of 73,896

Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

cancer biology more details view paper
  • Downloaded 4,179 times
  • Download rankings, all-time:
    • Site-wide: 718 out of 73,896
    • In cancer biology: 20 out of 2,532
  • Year to date:
    • Site-wide: 2,282 out of 73,896
  • Since beginning of last month:
    • Site-wide: 2,282 out of 73,896

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 3,362 times
  • Download rankings, all-time:
    • Site-wide: 1,078 out of 73,896
    • In genomics: 257 out of 4,893
  • Year to date:
    • Site-wide: 1,177 out of 73,896
  • Since beginning of last month:
    • Site-wide: 1,177 out of 73,896

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,480 times
  • Download rankings, all-time:
    • Site-wide: 1,881 out of 73,896
    • In bioinformatics: 375 out of 7,186
  • Year to date:
    • Site-wide: 54,133 out of 73,896
  • Since beginning of last month:
    • Site-wide: 54,133 out of 73,896

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,319 times
  • Download rankings, all-time:
    • Site-wide: 2,118 out of 73,896
    • In genomics: 446 out of 4,893
  • Year to date:
    • Site-wide: 69,828 out of 73,896
  • Since beginning of last month:
    • Site-wide: 69,828 out of 73,896

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,155 times
  • Download rankings, all-time:
    • Site-wide: 2,402 out of 73,896
    • In cancer biology: 57 out of 2,532
  • Year to date:
    • Site-wide: 8,581 out of 73,896
  • Since beginning of last month:
    • Site-wide: 8,581 out of 73,896

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,034 times
  • Download rankings, all-time:
    • Site-wide: 2,657 out of 73,896
    • In genomics: 541 out of 4,893
  • Year to date:
    • Site-wide: 36,892 out of 73,896
  • Since beginning of last month:
    • Site-wide: 36,892 out of 73,896

Sex Differences in Oncogenic Mutational Processes

cancer biology more details view paper
  • Downloaded 1,883 times
  • Download rankings, all-time:
    • Site-wide: 3,026 out of 73,896
    • In cancer biology: 73 out of 2,532
  • Year to date:
    • Site-wide: 9,459 out of 73,896
  • Since beginning of last month:
    • Site-wide: 9,459 out of 73,896

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,716 times
  • Download rankings, all-time:
    • Site-wide: 3,545 out of 73,896
    • In bioinformatics: 698 out of 7,186
  • Year to date:
    • Site-wide: 11,829 out of 73,896
  • Since beginning of last month:
    • Site-wide: 11,829 out of 73,896

The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact

cancer biology more details view paper
  • Downloaded 1,482 times
  • Download rankings, all-time:
    • Site-wide: 4,567 out of 73,896
    • In cancer biology: 114 out of 2,532
  • Year to date:
    • Site-wide: 10,362 out of 73,896
  • Since beginning of last month:
    • Site-wide: 10,362 out of 73,896

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
  • Downloaded 1,308 times
  • Download rankings, all-time:
    • Site-wide: 5,611 out of 73,896
    • In cancer biology: 149 out of 2,532
  • Year to date:
    • Site-wide: 37,724 out of 73,896
  • Since beginning of last month:
    • Site-wide: 37,724 out of 73,896

Kronos: a workflow assembler for genome analytics and informatics

bioinformatics more details view paper
  • Downloaded 1,261 times
  • Download rankings, all-time:
    • Site-wide: 5,976 out of 73,896
    • In bioinformatics: 1,134 out of 7,186
  • Year to date:
    • Site-wide: 41,707 out of 73,896
  • Since beginning of last month:
    • Site-wide: 41,707 out of 73,896

Integrative pathway enrichment analysis of multivariate omics data

bioinformatics more details view paper
  • Downloaded 1,056 times
  • Download rankings, all-time:
    • Site-wide: 8,026 out of 73,896
    • In bioinformatics: 1,409 out of 7,186
  • Year to date:
    • Site-wide: 12,598 out of 73,896
  • Since beginning of last month:
    • Site-wide: 12,598 out of 73,896

The Origins and Consequences of Localized and Global Somatic Hypermutation

cancer biology more details view paper
  • Downloaded 918 times
  • Download rankings, all-time:
    • Site-wide: 10,089 out of 73,896
    • In cancer biology: 301 out of 2,532
  • Year to date:
    • Site-wide: 11,045 out of 73,896
  • Since beginning of last month:
    • Site-wide: 11,045 out of 73,896

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 780 times
  • Download rankings, all-time:
    • Site-wide: 12,936 out of 73,896
    • In bioinformatics: 2,107 out of 7,186
  • Year to date:
    • Site-wide: 51,984 out of 73,896
  • Since beginning of last month:
    • Site-wide: 51,984 out of 73,896

Quantifying the Influence of Mutation Detection on Tumour Subclonal Reconstruction

cancer biology more details view paper
  • Downloaded 753 times
  • Download rankings, all-time:
    • Site-wide: 13,643 out of 73,896
    • In cancer biology: 406 out of 2,532
  • Year to date:
    • Site-wide: 20,255 out of 73,896
  • Since beginning of last month:
    • Site-wide: 20,255 out of 73,896

BPG: Seamless, Automated and Interactive Visualization of Scientific Data

bioinformatics more details view paper
  • Downloaded 750 times
  • Download rankings, all-time:
    • Site-wide: 13,730 out of 73,896
    • In bioinformatics: 2,201 out of 7,186
  • Year to date:
    • Site-wide: 60,463 out of 73,896
  • Since beginning of last month:
    • Site-wide: 60,463 out of 73,896

Fast Nonnegative Matrix Factorization and Applications to Pattern Extraction, Deconvolution and Imputation

bioinformatics more details view paper
  • Downloaded 712 times
  • Download rankings, all-time:
    • Site-wide: 14,805 out of 73,896
    • In bioinformatics: 2,345 out of 7,186
  • Year to date:
    • Site-wide: 18,213 out of 73,896
  • Since beginning of last month:
    • Site-wide: 18,213 out of 73,896

Prediction of early breast cancer patient survival using ensembles of hypoxia signatures

bioinformatics more details view paper
  • Downloaded 519 times
  • Download rankings, all-time:
    • Site-wide: 23,089 out of 73,896
    • In bioinformatics: 3,256 out of 7,186
  • Year to date:
    • Site-wide: 47,492 out of 73,896
  • Since beginning of last month:
    • Site-wide: 47,492 out of 73,896

Modeling the MYC-driven normal-to-tumour switch in breast cancer.

cancer biology more details view paper
  • Downloaded 462 times
  • Download rankings, all-time:
    • Site-wide: 26,603 out of 73,896
    • In cancer biology: 839 out of 2,532
  • Year to date:
    • Site-wide: 32,071 out of 73,896
  • Since beginning of last month:
    • Site-wide: 32,071 out of 73,896

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 27,471 out of 73,896
    • In genomics: 2,856 out of 4,893
  • Year to date:
    • Site-wide: 52,686 out of 73,896
  • Since beginning of last month:
    • Site-wide: 52,686 out of 73,896

Network-Based Biomarkers Enable Cross-Disease Biomarker Discovery

bioinformatics more details view paper
  • Downloaded 435 times
  • Download rankings, all-time:
    • Site-wide: 28,496 out of 73,896
    • In bioinformatics: 3,785 out of 7,186
  • Year to date:
    • Site-wide: 55,754 out of 73,896
  • Since beginning of last month:
    • Site-wide: 55,754 out of 73,896

Divergent mutational processes distinguish hypoxic and normoxic tumours

cancer biology more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 33,407 out of 73,896
    • In cancer biology: 1,067 out of 2,532
  • Year to date:
    • Site-wide: 15,753 out of 73,896
  • Since beginning of last month:
    • Site-wide: 15,753 out of 73,896

Accurate Reference-Free Somatic Variant-Calling by Integrating Genomic, Sequencing and Population Data

bioinformatics more details view paper
  • Downloaded 341 times
  • Download rankings, all-time:
    • Site-wide: 37,013 out of 73,896
    • In bioinformatics: 4,541 out of 7,186
  • Year to date:
    • Site-wide: 45,105 out of 73,896
  • Since beginning of last month:
    • Site-wide: 45,105 out of 73,896

Subnetwork-based prognostic biomarkers exhibit performance and robustness superior to gene-based biomarkers in breast cancer

bioinformatics more details view paper
  • Downloaded 218 times
  • Download rankings, all-time:
    • Site-wide: 52,322 out of 73,896
    • In bioinformatics: 5,743 out of 7,186
  • Year to date:
    • Site-wide: 69,059 out of 73,896
  • Since beginning of last month:
    • Site-wide: 69,059 out of 73,896

Valection: Design Optimization for Validation and Verification Studies

bioinformatics more details view paper
  • Downloaded 212 times
  • Download rankings, all-time:
    • Site-wide: 53,208 out of 73,896
    • In bioinformatics: 5,809 out of 7,186
  • Year to date:
    • Site-wide: 71,578 out of 73,896
  • Since beginning of last month:
    • Site-wide: 71,578 out of 73,896

Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection

genomics more details view paper
  • Downloaded 212 times
  • Download rankings, all-time:
    • Site-wide: 53,256 out of 73,896
    • In genomics: 4,182 out of 4,893
  • Year to date:
    • Site-wide: 66,358 out of 73,896
  • Since beginning of last month:
    • Site-wide: 66,358 out of 73,896

HPCI: A Perl module for writing cluster-portable bioinformatics pipelines

bioinformatics more details view paper
  • Downloaded 183 times
  • Download rankings, all-time:
    • Site-wide: 57,755 out of 73,896
    • In bioinformatics: 6,158 out of 7,186
  • Year to date:
    • Site-wide: 53,579 out of 73,896
  • Since beginning of last month:
    • Site-wide: 53,579 out of 73,896

Identifying TCDD-resistance genes via murine and rat comparative genomics and transcriptomics

genomics more details view paper
  • Downloaded 158 times
  • Download rankings, all-time:
    • Site-wide: 61,626 out of 73,896
    • In genomics: 4,525 out of 4,893
  • Year to date:
    • Site-wide: 59,752 out of 73,896
  • Since beginning of last month:
    • Site-wide: 59,752 out of 73,896

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