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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,725 bioRxiv papers from 278,303 authors.

Author: Paul C. Boutros

Rankings

  • All-time downloads: 40,700 (rank: 353 out of 278,303)
  • Categories:
    • bioinformatics: 9,887 (rank: 295 out of 24,398)
    • cancer biology: 19,216 (rank: 22 out of 17,214)
    • genomics: 11,597 (rank: 766 out of 31,927)

Downloads per author, site-wide

Preprints

The evolutionary history of 2,658 cancers

cancer biology more details view paper
  • Downloaded 7,378 times
  • Download rankings, all-time:
    • Site-wide: 187 out of 62,725
    • In cancer biology: 5 out of 2,061
  • Year to date:
    • Site-wide: 501 out of 62,725
  • Since beginning of last month:
    • Site-wide: 893 out of 62,725

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

genomics more details view paper
  • Downloaded 4,260 times
  • Download rankings, all-time:
    • Site-wide: 552 out of 62,725
    • In genomics: 146 out of 4,314
  • Year to date:
    • Site-wide: 490 out of 62,725
  • Since beginning of last month:
    • Site-wide: 1,704 out of 62,725

Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

cancer biology more details view paper
  • Downloaded 3,811 times
  • Download rankings, all-time:
    • Site-wide: 691 out of 62,725
    • In cancer biology: 21 out of 2,061
  • Year to date:
    • Site-wide: 1,070 out of 62,725
  • Since beginning of last month:
    • Site-wide: 1,796 out of 62,725

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,450 times
  • Download rankings, all-time:
    • Site-wide: 1,549 out of 62,725
    • In bioinformatics: 308 out of 6,249
  • Year to date:
    • Site-wide: 43,939 out of 62,725
  • Since beginning of last month:
    • Site-wide: 37,110 out of 62,725

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 2,363 times
  • Download rankings, all-time:
    • Site-wide: 1,659 out of 62,725
    • In genomics: 368 out of 4,314
  • Year to date:
    • Site-wide: 274 out of 62,725
  • Since beginning of last month:
    • Site-wide: 303 out of 62,725

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,275 times
  • Download rankings, all-time:
    • Site-wide: 1,766 out of 62,725
    • In genomics: 392 out of 4,314
  • Year to date:
    • Site-wide: 48,511 out of 62,725
  • Since beginning of last month:
    • Site-wide: 36,708 out of 62,725

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 1,997 times
  • Download rankings, all-time:
    • Site-wide: 2,248 out of 62,725
    • In cancer biology: 52 out of 2,061
  • Year to date:
    • Site-wide: 6,788 out of 62,725
  • Since beginning of last month:
    • Site-wide: 14,663 out of 62,725

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 1,981 times
  • Download rankings, all-time:
    • Site-wide: 2,278 out of 62,725
    • In genomics: 478 out of 4,314
  • Year to date:
    • Site-wide: 45,135 out of 62,725
  • Since beginning of last month:
    • Site-wide: 38,706 out of 62,725

Sex Differences in Oncogenic Mutational Processes

cancer biology more details view paper
  • Downloaded 1,707 times
  • Download rankings, all-time:
    • Site-wide: 2,924 out of 62,725
    • In cancer biology: 69 out of 2,061
  • Year to date:
    • Site-wide: 531 out of 62,725
  • Since beginning of last month:
    • Site-wide: 9,186 out of 62,725

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,545 times
  • Download rankings, all-time:
    • Site-wide: 3,458 out of 62,725
    • In bioinformatics: 699 out of 6,249
  • Year to date:
    • Site-wide: 5,072 out of 62,725
  • Since beginning of last month:
    • Site-wide: 2,887 out of 62,725

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
  • Downloaded 1,239 times
  • Download rankings, all-time:
    • Site-wide: 4,960 out of 62,725
    • In cancer biology: 129 out of 2,061
  • Year to date:
    • Site-wide: 13,261 out of 62,725
  • Since beginning of last month:
    • Site-wide: 22,153 out of 62,725

Kronos: a workflow assembler for genome analytics and informatics

bioinformatics more details view paper
  • Downloaded 1,222 times
  • Download rankings, all-time:
    • Site-wide: 5,069 out of 62,725
    • In bioinformatics: 987 out of 6,249
  • Year to date:
    • Site-wide: 43,028 out of 62,725
  • Since beginning of last month:
    • Site-wide: 54,800 out of 62,725

Integrative pathway enrichment analysis of multivariate omics data

bioinformatics more details view paper
  • Downloaded 951 times
  • Download rankings, all-time:
    • Site-wide: 7,652 out of 62,725
    • In bioinformatics: 1,367 out of 6,249
  • Year to date:
    • Site-wide: 12,423 out of 62,725
  • Since beginning of last month:
    • Site-wide: 29,581 out of 62,725

The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact

cancer biology more details view paper
  • Downloaded 946 times
  • Download rankings, all-time:
    • Site-wide: 7,714 out of 62,725
    • In cancer biology: 202 out of 2,061
  • Year to date:
    • Site-wide: 1,610 out of 62,725
  • Since beginning of last month:
    • Site-wide: 3,440 out of 62,725

The Origins and Consequences of Localized and Global Somatic Hypermutation

cancer biology more details view paper
  • Downloaded 785 times
  • Download rankings, all-time:
    • Site-wide: 10,322 out of 62,725
    • In cancer biology: 291 out of 2,061
  • Year to date:
    • Site-wide: 11,373 out of 62,725
  • Since beginning of last month:
    • Site-wide: 11,453 out of 62,725

BPG: Seamless, Automated and Interactive Visualization of Scientific Data

bioinformatics more details view paper
  • Downloaded 724 times
  • Download rankings, all-time:
    • Site-wide: 11,593 out of 62,725
    • In bioinformatics: 1,938 out of 6,249
  • Year to date:
    • Site-wide: 40,997 out of 62,725
  • Since beginning of last month:
    • Site-wide: 44,067 out of 62,725

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 723 times
  • Download rankings, all-time:
    • Site-wide: 11,616 out of 62,725
    • In bioinformatics: 1,939 out of 6,249
  • Year to date:
    • Site-wide: 27,988 out of 62,725
  • Since beginning of last month:
    • Site-wide: 42,291 out of 62,725

Quantifying the Influence of Mutation Detection on Tumour Subclonal Reconstruction

cancer biology more details view paper
  • Downloaded 647 times
  • Download rankings, all-time:
    • Site-wide: 13,576 out of 62,725
    • In cancer biology: 397 out of 2,061
  • Year to date:
    • Site-wide: 8,445 out of 62,725
  • Since beginning of last month:
    • Site-wide: 7,037 out of 62,725

Fast Nonnegative Matrix Factorization and Applications to Pattern Extraction, Deconvolution and Imputation

bioinformatics more details view paper
  • Downloaded 616 times
  • Download rankings, all-time:
    • Site-wide: 14,530 out of 62,725
    • In bioinformatics: 2,315 out of 6,249
  • Year to date:
    • Site-wide: 12,127 out of 62,725
  • Since beginning of last month:
    • Site-wide: 12,355 out of 62,725

Prediction of early breast cancer patient survival using ensembles of hypoxia signatures

bioinformatics more details view paper
  • Downloaded 473 times
  • Download rankings, all-time:
    • Site-wide: 20,466 out of 62,725
    • In bioinformatics: 2,988 out of 6,249
  • Year to date:
    • Site-wide: 24,532 out of 62,725
  • Since beginning of last month:
    • Site-wide: 47,548 out of 62,725

Modeling the MYC-driven normal-to-tumour switch in breast cancer.

cancer biology more details view paper
  • Downloaded 419 times
  • Download rankings, all-time:
    • Site-wide: 23,563 out of 62,725
    • In cancer biology: 725 out of 2,061
  • Year to date:
    • Site-wide: 15,804 out of 62,725
  • Since beginning of last month:
    • Site-wide: 29,344 out of 62,725

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 415 times
  • Download rankings, all-time:
    • Site-wide: 23,849 out of 62,725
    • In genomics: 2,570 out of 4,314
  • Year to date:
    • Site-wide: 54,287 out of 62,725
  • Since beginning of last month:
    • Site-wide: 54,949 out of 62,725

Network-Based Biomarkers Enable Cross-Disease Biomarker Discovery

bioinformatics more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 25,804 out of 62,725
    • In bioinformatics: 3,533 out of 6,249
  • Year to date:
    • Site-wide: 33,166 out of 62,725
  • Since beginning of last month:
    • Site-wide: 51,978 out of 62,725

Accurate Reference-Free Somatic Variant-Calling by Integrating Genomic, Sequencing and Population Data

bioinformatics more details view paper
  • Downloaded 290 times
  • Download rankings, all-time:
    • Site-wide: 33,786 out of 62,725
    • In bioinformatics: 4,245 out of 6,249
  • Year to date:
    • Site-wide: 25,477 out of 62,725
  • Since beginning of last month:
    • Site-wide: 12,847 out of 62,725

Divergent mutational processes distinguish hypoxic and normoxic tumours

cancer biology more details view paper
  • Downloaded 287 times
  • Download rankings, all-time:
    • Site-wide: 34,115 out of 62,725
    • In cancer biology: 1,057 out of 2,061
  • Year to date:
    • Site-wide: 12,093 out of 62,725
  • Since beginning of last month:
    • Site-wide: 20,446 out of 62,725

Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection

genomics more details view paper
  • Downloaded 190 times
  • Download rankings, all-time:
    • Site-wide: 45,261 out of 62,725
    • In genomics: 3,688 out of 4,314
  • Year to date:
    • Site-wide: 54,946 out of 62,725
  • Since beginning of last month:
    • Site-wide: 50,902 out of 62,725

Subnetwork-based prognostic biomarkers exhibit performance and robustness superior to gene-based biomarkers in breast cancer

bioinformatics more details view paper
  • Downloaded 182 times
  • Download rankings, all-time:
    • Site-wide: 46,292 out of 62,725
    • In bioinformatics: 5,178 out of 6,249
  • Year to date:
    • Site-wide: 46,679 out of 62,725
  • Since beginning of last month:
    • Site-wide: 47,258 out of 62,725

Valection: Design Optimization for Validation and Verification Studies

bioinformatics more details view paper
  • Downloaded 178 times
  • Download rankings, all-time:
    • Site-wide: 46,698 out of 62,725
    • In bioinformatics: 5,216 out of 6,249
  • Year to date:
    • Site-wide: 60,320 out of 62,725
  • Since beginning of last month:
    • Site-wide: 57,299 out of 62,725

HPCI: A Perl module for writing cluster-portable bioinformatics pipelines

bioinformatics more details view paper
  • Downloaded 148 times
  • Download rankings, all-time:
    • Site-wide: 50,860 out of 62,725
    • In bioinformatics: 5,540 out of 6,249
  • Year to date:
    • Site-wide: 56,770 out of 62,725
  • Since beginning of last month:
    • Site-wide: 51,115 out of 62,725

Identifying TCDD-resistance genes via murine and rat comparative genomics and transcriptomics

genomics more details view paper
  • Downloaded 113 times
  • Download rankings, all-time:
    • Site-wide: 55,419 out of 62,725
    • In genomics: 4,076 out of 4,314
  • Year to date:
    • Site-wide: 36,395 out of 62,725
  • Since beginning of last month:
    • Site-wide: 23,640 out of 62,725

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