Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,354 bioRxiv papers from 296,792 authors.

Author: Paul C. Boutros

Rankings

  • All-time downloads: 43,643 (rank: 348 out of 296,792)
  • Categories:
    • bioinformatics: 10,275 (rank: 303 out of 25,877)
    • cancer biology: 20,792 (rank: 22 out of 18,942)
    • genomics: 12,576 (rank: 753 out of 33,725)

Downloads per author, site-wide

Preprints

The evolutionary history of 2,658 cancers

cancer biology more details view paper
  • Downloaded 8,020 times
  • Download rankings, all-time:
    • Site-wide: 184 out of 67,354
    • In cancer biology: 6 out of 2,271
  • Year to date:
    • Site-wide: 382 out of 67,354
  • Since beginning of last month:
    • Site-wide: 631 out of 67,354

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

genomics more details view paper
  • Downloaded 4,557 times
  • Download rankings, all-time:
    • Site-wide: 529 out of 67,354
    • In genomics: 138 out of 4,574
  • Year to date:
    • Site-wide: 499 out of 67,354
  • Since beginning of last month:
    • Site-wide: 1,446 out of 67,354

Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

cancer biology more details view paper
  • Downloaded 3,954 times
  • Download rankings, all-time:
    • Site-wide: 701 out of 67,354
    • In cancer biology: 21 out of 2,271
  • Year to date:
    • Site-wide: 1,160 out of 67,354
  • Since beginning of last month:
    • Site-wide: 2,963 out of 67,354

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 2,957 times
  • Download rankings, all-time:
    • Site-wide: 1,217 out of 67,354
    • In genomics: 282 out of 4,574
  • Year to date:
    • Site-wide: 245 out of 67,354
  • Since beginning of last month:
    • Site-wide: 417 out of 67,354

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,459 times
  • Download rankings, all-time:
    • Site-wide: 1,694 out of 67,354
    • In bioinformatics: 338 out of 6,638
  • Year to date:
    • Site-wide: 50,267 out of 67,354
  • Since beginning of last month:
    • Site-wide: 50,547 out of 67,354

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,302 times
  • Download rankings, all-time:
    • Site-wide: 1,913 out of 67,354
    • In genomics: 416 out of 4,574
  • Year to date:
    • Site-wide: 48,726 out of 67,354
  • Since beginning of last month:
    • Site-wide: 39,776 out of 67,354

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,068 times
  • Download rankings, all-time:
    • Site-wide: 2,309 out of 67,354
    • In cancer biology: 55 out of 2,271
  • Year to date:
    • Site-wide: 6,978 out of 67,354
  • Since beginning of last month:
    • Site-wide: 6,721 out of 67,354

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,003 times
  • Download rankings, all-time:
    • Site-wide: 2,437 out of 67,354
    • In genomics: 505 out of 4,574
  • Year to date:
    • Site-wide: 46,939 out of 67,354
  • Since beginning of last month:
    • Site-wide: 50,178 out of 67,354

Sex Differences in Oncogenic Mutational Processes

cancer biology more details view paper
  • Downloaded 1,800 times
  • Download rankings, all-time:
    • Site-wide: 2,907 out of 67,354
    • In cancer biology: 71 out of 2,271
  • Year to date:
    • Site-wide: 661 out of 67,354
  • Since beginning of last month:
    • Site-wide: 6,254 out of 67,354

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,635 times
  • Download rankings, all-time:
    • Site-wide: 3,420 out of 67,354
    • In bioinformatics: 680 out of 6,638
  • Year to date:
    • Site-wide: 5,092 out of 67,354
  • Since beginning of last month:
    • Site-wide: 7,244 out of 67,354

The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact

cancer biology more details view paper
  • Downloaded 1,376 times
  • Download rankings, all-time:
    • Site-wide: 4,613 out of 67,354
    • In cancer biology: 119 out of 2,271
  • Year to date:
    • Site-wide: 1,120 out of 67,354
  • Since beginning of last month:
    • Site-wide: 1,235 out of 67,354

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
  • Downloaded 1,279 times
  • Download rankings, all-time:
    • Site-wide: 5,175 out of 67,354
    • In cancer biology: 137 out of 2,271
  • Year to date:
    • Site-wide: 14,131 out of 67,354
  • Since beginning of last month:
    • Site-wide: 20,541 out of 67,354

Kronos: a workflow assembler for genome analytics and informatics

bioinformatics more details view paper
  • Downloaded 1,237 times
  • Download rankings, all-time:
    • Site-wide: 5,480 out of 67,354
    • In bioinformatics: 1,053 out of 6,638
  • Year to date:
    • Site-wide: 47,410 out of 67,354
  • Since beginning of last month:
    • Site-wide: 58,425 out of 67,354

Integrative pathway enrichment analysis of multivariate omics data

bioinformatics more details view paper
  • Downloaded 993 times
  • Download rankings, all-time:
    • Site-wide: 7,861 out of 67,354
    • In bioinformatics: 1,390 out of 6,638
  • Year to date:
    • Site-wide: 13,250 out of 67,354
  • Since beginning of last month:
    • Site-wide: 13,397 out of 67,354

The Origins and Consequences of Localized and Global Somatic Hypermutation

cancer biology more details view paper
  • Downloaded 843 times
  • Download rankings, all-time:
    • Site-wide: 10,199 out of 67,354
    • In cancer biology: 291 out of 2,271
  • Year to date:
    • Site-wide: 11,475 out of 67,354
  • Since beginning of last month:
    • Site-wide: 14,437 out of 67,354

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 760 times
  • Download rankings, all-time:
    • Site-wide: 11,927 out of 67,354
    • In bioinformatics: 1,982 out of 6,638
  • Year to date:
    • Site-wide: 27,938 out of 67,354
  • Since beginning of last month:
    • Site-wide: 19,784 out of 67,354

BPG: Seamless, Automated and Interactive Visualization of Scientific Data

bioinformatics more details view paper
  • Downloaded 732 times
  • Download rankings, all-time:
    • Site-wide: 12,624 out of 67,354
    • In bioinformatics: 2,058 out of 6,638
  • Year to date:
    • Site-wide: 47,775 out of 67,354
  • Since beginning of last month:
    • Site-wide: 63,141 out of 67,354

Quantifying the Influence of Mutation Detection on Tumour Subclonal Reconstruction

cancer biology more details view paper
  • Downloaded 694 times
  • Download rankings, all-time:
    • Site-wide: 13,608 out of 67,354
    • In cancer biology: 405 out of 2,271
  • Year to date:
    • Site-wide: 9,301 out of 67,354
  • Since beginning of last month:
    • Site-wide: 23,722 out of 67,354

Fast Nonnegative Matrix Factorization and Applications to Pattern Extraction, Deconvolution and Imputation

bioinformatics more details view paper
  • Downloaded 657 times
  • Download rankings, all-time:
    • Site-wide: 14,673 out of 67,354
    • In bioinformatics: 2,331 out of 6,638
  • Year to date:
    • Site-wide: 13,035 out of 67,354
  • Since beginning of last month:
    • Site-wide: 17,773 out of 67,354

Prediction of early breast cancer patient survival using ensembles of hypoxia signatures

bioinformatics more details view paper
  • Downloaded 495 times
  • Download rankings, all-time:
    • Site-wide: 21,438 out of 67,354
    • In bioinformatics: 3,104 out of 6,638
  • Year to date:
    • Site-wide: 27,215 out of 67,354
  • Since beginning of last month:
    • Site-wide: 33,784 out of 67,354

Modeling the MYC-driven normal-to-tumour switch in breast cancer.

cancer biology more details view paper
  • Downloaded 435 times
  • Download rankings, all-time:
    • Site-wide: 25,027 out of 67,354
    • In cancer biology: 783 out of 2,271
  • Year to date:
    • Site-wide: 18,822 out of 67,354
  • Since beginning of last month:
    • Site-wide: 45,327 out of 67,354

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 431 times
  • Download rankings, all-time:
    • Site-wide: 25,352 out of 67,354
    • In genomics: 2,681 out of 4,574
  • Year to date:
    • Site-wide: 57,584 out of 67,354
  • Since beginning of last month:
    • Site-wide: 58,077 out of 67,354

Network-Based Biomarkers Enable Cross-Disease Biomarker Discovery

bioinformatics more details view paper
  • Downloaded 417 times
  • Download rankings, all-time:
    • Site-wide: 26,232 out of 67,354
    • In bioinformatics: 3,575 out of 6,638
  • Year to date:
    • Site-wide: 33,481 out of 67,354
  • Since beginning of last month:
    • Site-wide: 16,750 out of 67,354

Divergent mutational processes distinguish hypoxic and normoxic tumours

cancer biology more details view paper
  • Downloaded 323 times
  • Download rankings, all-time:
    • Site-wide: 34,157 out of 67,354
    • In cancer biology: 1,063 out of 2,271
  • Year to date:
    • Site-wide: 13,313 out of 67,354
  • Since beginning of last month:
    • Site-wide: 22,982 out of 67,354

Accurate Reference-Free Somatic Variant-Calling by Integrating Genomic, Sequencing and Population Data

bioinformatics more details view paper
  • Downloaded 319 times
  • Download rankings, all-time:
    • Site-wide: 34,499 out of 67,354
    • In bioinformatics: 4,306 out of 6,638
  • Year to date:
    • Site-wide: 27,040 out of 67,354
  • Since beginning of last month:
    • Site-wide: 21,418 out of 67,354

Subnetwork-based prognostic biomarkers exhibit performance and robustness superior to gene-based biomarkers in breast cancer

bioinformatics more details view paper
  • Downloaded 208 times
  • Download rankings, all-time:
    • Site-wide: 47,411 out of 67,354
    • In bioinformatics: 5,316 out of 6,638
  • Year to date:
    • Site-wide: 47,219 out of 67,354
  • Since beginning of last month:
    • Site-wide: 64,118 out of 67,354

Valection: Design Optimization for Validation and Verification Studies

bioinformatics more details view paper
  • Downloaded 198 times
  • Download rankings, all-time:
    • Site-wide: 48,735 out of 67,354
    • In bioinformatics: 5,414 out of 6,638
  • Year to date:
    • Site-wide: 62,977 out of 67,354
  • Since beginning of last month:
    • Site-wide: 28,797 out of 67,354

Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection

genomics more details view paper
  • Downloaded 197 times
  • Download rankings, all-time:
    • Site-wide: 48,908 out of 67,354
    • In genomics: 3,921 out of 4,574
  • Year to date:
    • Site-wide: 61,196 out of 67,354
  • Since beginning of last month:
    • Site-wide: 59,788 out of 67,354

HPCI: A Perl module for writing cluster-portable bioinformatics pipelines

bioinformatics more details view paper
  • Downloaded 165 times
  • Download rankings, all-time:
    • Site-wide: 53,559 out of 67,354
    • In bioinformatics: 5,759 out of 6,638
  • Year to date:
    • Site-wide: 59,701 out of 67,354
  • Since beginning of last month:
    • Site-wide: 61,168 out of 67,354

Identifying TCDD-resistance genes via murine and rat comparative genomics and transcriptomics

genomics more details view paper
  • Downloaded 129 times
  • Download rankings, all-time:
    • Site-wide: 58,635 out of 67,354
    • In genomics: 4,283 out of 4,574
  • Year to date:
    • Site-wide: 40,316 out of 67,354
  • Since beginning of last month:
    • Site-wide: 50,095 out of 67,354

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News