Rxivist logo

Author: Paul C. Boutros

Rankings

  • All-time downloads: 57,230 (rank: 2,196 )
  • Categories:
    • bioinformatics: 12,787 (rank: 454 )
    • cancer biology: 26,913 (rank: 22 )
    • genomics: 17,530 (rank: 620 )

Downloads per author, site-wide

Preprints

The evolutionary history of 2,658 cancers

cancer biology more details view paper
  • Downloaded 9,409 times
  • Download rankings, all-time:
    • Site-wide: 749
    • In cancer biology: 8
  • Year to date:
    • Site-wide: 22,327
  • Since beginning of last month:
    • Site-wide: 54,762

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

genomics more details view paper
  • Downloaded 6,057 times
  • Download rankings, all-time:
    • Site-wide: 1,318
    • In genomics: 134
  • Year to date:
    • Site-wide: 20,422
  • Since beginning of last month:
    • Site-wide: 10,070

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 5,520 times
  • Download rankings, all-time:
    • Site-wide: 1,528
    • In genomics: 156
  • Year to date:
    • Site-wide: 4,137
  • Since beginning of last month:
    • Site-wide: 5,201

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

cancer biology more details view paper
  • Downloaded 5,465 times
  • Download rankings, all-time:
    • Site-wide: 1,538
    • In cancer biology: 22
  • Year to date:
    • Site-wide: 2,789
  • Since beginning of last month:
    • Site-wide: 7,416

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,570 times
  • Download rankings, all-time:
    • Site-wide: 4,521
    • In bioinformatics: 521
  • Year to date:
    • Site-wide: 108,773
  • Since beginning of last month:
    • Site-wide: 103,425

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,388 times
  • Download rankings, all-time:
    • Site-wide: 5,055
    • In genomics: 616
  • Year to date:
    • Site-wide: 115,783
  • Since beginning of last month:
    • Site-wide: 67,589

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,381 times
  • Download rankings, all-time:
    • Site-wide: 5,079
    • In cancer biology: 76
  • Year to date:
    • Site-wide: 89,763
  • Since beginning of last month:
    • Site-wide: 64,650

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,137 times
  • Download rankings, all-time:
    • Site-wide: 5,935
    • In genomics: 700
  • Year to date:
    • Site-wide: 88,665
  • Since beginning of last month:
    • Site-wide: 53,504

Sex Differences in Oncogenic Mutational Processes

cancer biology more details view paper
  • Downloaded 2,082 times
  • Download rankings, all-time:
    • Site-wide: 6,164
    • In cancer biology: 95
  • Year to date:
    • Site-wide: 93,875
  • Since beginning of last month:
    • Site-wide: 61,466

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,958 times
  • Download rankings, all-time:
    • Site-wide: 6,760
    • In bioinformatics: 850
  • Year to date:
    • Site-wide: 22,533
  • Since beginning of last month:
    • Site-wide: 50,506

The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact

cancer biology more details view paper
  • Downloaded 1,776 times
  • Download rankings, all-time:
    • Site-wide: 7,786
    • In cancer biology: 139
  • Year to date:
    • Site-wide: 22,096
  • Since beginning of last month:
    • Site-wide: 20,448

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
  • Downloaded 1,419 times
  • Download rankings, all-time:
    • Site-wide: 10,939
    • In cancer biology: 224
  • Year to date:
    • Site-wide: 81,053
  • Since beginning of last month:
    • Site-wide: 82,079

Kronos: a workflow assembler for genome analytics and informatics

bioinformatics more details view paper
  • Downloaded 1,354 times
  • Download rankings, all-time:
    • Site-wide: 11,765
    • In bioinformatics: 1,482
  • Year to date:
    • Site-wide: 97,867
  • Since beginning of last month:
    • Site-wide: 77,327

The Origins and Consequences of Localized and Global Somatic Hypermutation

cancer biology more details view paper
  • Downloaded 1,350 times
  • Download rankings, all-time:
    • Site-wide: 11,825
    • In cancer biology: 251
  • Year to date:
    • Site-wide: 25,466
  • Since beginning of last month:
    • Site-wide: 14,214

Integrative pathway enrichment analysis of multivariate omics data

bioinformatics more details view paper
  • Downloaded 1,267 times
  • Download rankings, all-time:
    • Site-wide: 12,987
    • In bioinformatics: 1,632
  • Year to date:
    • Site-wide: 84,779
  • Since beginning of last month:
    • Site-wide: 66,765

Quantifying the Influence of Mutation Detection on Tumour Subclonal Reconstruction

cancer biology more details view paper
  • Downloaded 1,158 times
  • Download rankings, all-time:
    • Site-wide: 14,843
    • In cancer biology: 321
  • Year to date:
    • Site-wide: 18,883
  • Since beginning of last month:
    • Site-wide: 37,858

Fast Nonnegative Matrix Factorization and Applications to Pattern Extraction, Deconvolution and Imputation

bioinformatics more details view paper
  • Downloaded 993 times
  • Download rankings, all-time:
    • Site-wide: 18,773
    • In bioinformatics: 2,320
  • Year to date:
    • Site-wide: 22,442
  • Since beginning of last month:
    • Site-wide: 18,237

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 913 times
  • Download rankings, all-time:
    • Site-wide: 21,143
    • In bioinformatics: 2,583
  • Year to date:
    • Site-wide: 91,784
  • Since beginning of last month:
    • Site-wide: 98,311

BPG: Seamless, Automated and Interactive Visualization of Scientific Data

bioinformatics more details view paper
  • Downloaded 837 times
  • Download rankings, all-time:
    • Site-wide: 23,990
    • In bioinformatics: 2,919
  • Year to date:
    • Site-wide: 86,101
  • Since beginning of last month:
    • Site-wide: 84,690

Prediction of early breast cancer patient survival using ensembles of hypoxia signatures

bioinformatics more details view paper
  • Downloaded 650 times
  • Download rankings, all-time:
    • Site-wide: 33,941
    • In bioinformatics: 3,862
  • Year to date:
    • Site-wide: 62,576
  • Since beginning of last month:
    • Site-wide: 91,563

Modeling the MYC-driven normal-to-tumour switch in breast cancer.

cancer biology more details view paper
  • Downloaded 579 times
  • Download rankings, all-time:
    • Site-wide: 39,315
    • In cancer biology: 1,078
  • Year to date:
    • Site-wide: 57,650
  • Since beginning of last month:
    • Site-wide: 83,300

Divergent mutational processes distinguish hypoxic and normoxic tumours

cancer biology more details view paper
  • Downloaded 561 times
  • Download rankings, all-time:
    • Site-wide: 40,935
    • In cancer biology: 1,142
  • Year to date:
    • Site-wide: 117,302
  • Since beginning of last month:
    • Site-wide: 115,646

Network-Based Biomarkers Enable Cross-Disease Biomarker Discovery

bioinformatics more details view paper
  • Downloaded 521 times
  • Download rankings, all-time:
    • Site-wide: 44,827
    • In bioinformatics: 4,790
  • Year to date:
    • Site-wide: 78,699
  • Since beginning of last month:
    • Site-wide: 113,666

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 47,112
    • In genomics: 3,790
  • Year to date:
    • Site-wide: 114,811
  • Since beginning of last month:
    • Site-wide: 113,471

Accurate Reference-Free Somatic Variant-Calling by Integrating Genomic, Sequencing and Population Data

bioinformatics more details view paper
  • Downloaded 470 times
  • Download rankings, all-time:
    • Site-wide: 50,480
    • In bioinformatics: 5,282
  • Year to date:
    • Site-wide: 76,059
  • Since beginning of last month:
    • Site-wide: 61,102

DreamAI: algorithm for the imputation of proteomics data

bioinformatics more details view paper
  • Downloaded 429 times
  • Download rankings, all-time:
    • Site-wide: 55,767
    • In bioinformatics: 5,707
  • Year to date:
    • Site-wide: 7,553
  • Since beginning of last month:
    • Site-wide: 14,383

Differing total mRNA expression shapes the molecular and clinical phenotype of cancer

genomics more details view paper
  • Downloaded 390 times
  • Download rankings, all-time:
    • Site-wide: 61,309
    • In genomics: 4,494
  • Year to date:
    • Site-wide: 9,502
  • Since beginning of last month:
    • Site-wide: 17,465

Subnetwork-based prognostic biomarkers exhibit performance and robustness superior to gene-based biomarkers in breast cancer

bioinformatics more details view paper
  • Downloaded 303 times
  • Download rankings, all-time:
    • Site-wide: 76,079
    • In bioinformatics: 7,093
  • Year to date:
    • Site-wide: 107,226
  • Since beginning of last month:
    • Site-wide: 116,179

Valection: Design Optimization for Validation and Verification Studies

bioinformatics more details view paper
  • Downloaded 273 times
  • Download rankings, all-time:
    • Site-wide: 81,954
    • In bioinformatics: 7,476
  • Year to date:
    • Site-wide: 106,566
  • Since beginning of last month:
    • Site-wide: 81,984

Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection

genomics more details view paper
  • Downloaded 270 times
  • Download rankings, all-time:
    • Site-wide: 82,624
    • In genomics: 5,341
  • Year to date:
    • Site-wide: 109,137
  • Since beginning of last month:
    • Site-wide: 116,942

Identifying TCDD-resistance genes via murine and rat comparative genomics and transcriptomics

genomics more details view paper
  • Downloaded 269 times
  • Download rankings, all-time:
    • Site-wide: 82,787
    • In genomics: 5,353
  • Year to date:
    • Site-wide: 45,520
  • Since beginning of last month:
    • Site-wide: 64,868

HPCI: A Perl module for writing cluster-portable bioinformatics pipelines

bioinformatics more details view paper
  • Downloaded 249 times
  • Download rankings, all-time:
    • Site-wide: 86,999
    • In bioinformatics: 7,785
  • Year to date:
    • Site-wide: 50,924
  • Since beginning of last month:
    • Site-wide: 113,155

Cis-Regulatory Element Hijacking by Structural Variants Overshadows Topological Changes in Primary Prostate Cancer

cancer biology more details view paper
  • Downloaded 239 times
  • Download rankings, all-time:
    • Site-wide: 89,019
    • In cancer biology: 2,699
  • Year to date:
    • Site-wide: 506
  • Since beginning of last month:
    • Site-wide: None

Age Influences on the Molecular Presentation of Tumours

cancer biology more details view paper
  • Downloaded 229 times
  • Download rankings, all-time:
    • Site-wide: 91,130
    • In cancer biology: 2,756
  • Year to date:
    • Site-wide: 83,029
  • Since beginning of last month:
    • Site-wide: 42,402

NOX4 links metabolic regulation in pancreatic cancer to endoplasmic reticulum redox vulnerability and dependence on PRDX4

cancer biology more details view paper
  • Downloaded 148 times
  • Download rankings, all-time:
    • Site-wide: 107,659
    • In cancer biology: 3,341
  • Year to date:
    • Site-wide: 8,739
  • Since beginning of last month:
    • Site-wide: 21,729

Ancestry Influences on the Molecular Presentation of Tumours

cancer biology more details view paper
  • Downloaded 117 times
  • Download rankings, all-time:
    • Site-wide: 113,153
    • In cancer biology: 3,524
  • Year to date:
    • Site-wide: 77,171
  • Since beginning of last month:
    • Site-wide: 77,925

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News