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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,762 bioRxiv papers from 308,879 authors.

Author: Mark Gerstein

Rankings

  • All-time downloads: 31,785 (rank: 625 out of 308,818)
  • Categories:
    • bioinformatics: 5,946 (rank: 950 out of 26,857)
    • evolutionary biology: 141 (rank: 15,365 (tie) out of 16,583)
    • genomics: 25,698 (rank: 242 out of 34,868)

Downloads per author, site-wide

Preprints

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 7,999 times
  • Download rankings, all-time:
    • Site-wide: 195 out of 70,744
    • In genomics: 56 out of 4,722
  • Year to date:
    • Site-wide: 29,141 out of 70,744
  • Since beginning of last month:
    • Site-wide: 12,549 out of 70,744

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

genomics more details view paper
  • Downloaded 4,678 times
  • Download rankings, all-time:
    • Site-wide: 524 out of 70,744
    • In genomics: 134 out of 4,722
  • Year to date:
    • Site-wide: 2,682 out of 70,744
  • Since beginning of last month:
    • Site-wide: 2,370 out of 70,744

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

genomics more details view paper
  • Downloaded 4,360 times
  • Download rankings, all-time:
    • Site-wide: 612 out of 70,744
    • In genomics: 156 out of 4,722
  • Year to date:
    • Site-wide: 6,675 out of 70,744
  • Since beginning of last month:
    • Site-wide: 8,392 out of 70,744

Pan-cancer analysis of whole genomes reveals driver rearrangements promoted by LINE-1 retrotransposition in human tumours

genomics more details view paper
  • Downloaded 2,984 times
  • Download rankings, all-time:
    • Site-wide: 1,264 out of 70,744
    • In genomics: 291 out of 4,722
  • Year to date:
    • Site-wide: 3,550 out of 70,744
  • Since beginning of last month:
    • Site-wide: 2,988 out of 70,744

Passenger mutations in 2500 cancer genomes: Overall molecular functional impact and consequences

genomics more details view paper
  • Downloaded 1,710 times
  • Download rankings, all-time:
    • Site-wide: 3,363 out of 70,744
    • In genomics: 643 out of 4,722
  • Year to date:
    • Site-wide: 17,971 out of 70,744
  • Since beginning of last month:
    • Site-wide: 5,986 out of 70,744

The DOE Systems Biology Knowledgebase (KBase)

bioinformatics more details view paper
  • Downloaded 1,439 times
  • Download rankings, all-time:
    • Site-wide: 4,543 out of 70,744
    • In bioinformatics: 876 out of 6,926
  • Year to date:
    • Site-wide: 53,240 out of 70,744
  • Since beginning of last month:
    • Site-wide: 27,085 out of 70,744

Nearly all new protein-coding predictions in the CHESS database are not protein-coding

genomics more details view paper
  • Downloaded 1,337 times
  • Download rankings, all-time:
    • Site-wide: 5,116 out of 70,744
    • In genomics: 891 out of 4,722
  • Year to date:
    • Site-wide: 12,715 out of 70,744
  • Since beginning of last month:
    • Site-wide: 12,103 out of 70,744

Determining the impact of putative loss-of-function variants in protein-coding genes

genomics more details view paper
  • Downloaded 1,142 times
  • Download rankings, all-time:
    • Site-wide: 6,668 out of 70,744
    • In genomics: 1,076 out of 4,722
  • Year to date:
    • Site-wide: 31,865 out of 70,744
  • Since beginning of last month:
    • Site-wide: 27,773 out of 70,744

A cross-organism framework for supervised enhancer prediction with epigenetic pattern recognition and targeted validation

bioinformatics more details view paper
  • Downloaded 921 times
  • Download rankings, all-time:
    • Site-wide: 9,482 out of 70,744
    • In bioinformatics: 1,633 out of 6,926
  • Year to date:
    • Site-wide: 44,584 out of 70,744
  • Since beginning of last month:
    • Site-wide: 20,784 out of 70,744

Enhanced Transcriptome Maps from Multiple Mouse Tissues Reveal Evolutionary Constraint in Gene Expression for Thousands of Genes

bioinformatics more details view paper
  • Downloaded 901 times
  • Download rankings, all-time:
    • Site-wide: 9,807 out of 70,744
    • In bioinformatics: 1,679 out of 6,926
  • Year to date:
    • Site-wide: 68,935 out of 70,744
  • Since beginning of last month:
    • Site-wide: 43,580 out of 70,744

An integrative ENCODE resource for cancer genomics

genomics more details view paper
  • Downloaded 797 times
  • Download rankings, all-time:
    • Site-wide: 11,870 out of 70,744
    • In genomics: 1,676 out of 4,722
  • Year to date:
    • Site-wide: 3,471 out of 70,744
  • Since beginning of last month:
    • Site-wide: 2,879 out of 70,744

Private information leakage from functional genomics data: Quantification with calibration experiments and reduction via data sanitization protocols

bioinformatics more details view paper
  • Downloaded 723 times
  • Download rankings, all-time:
    • Site-wide: 13,708 out of 70,744
    • In bioinformatics: 2,198 out of 6,926
  • Year to date:
    • Site-wide: 4,448 out of 70,744
  • Since beginning of last month:
    • Site-wide: 2,754 out of 70,744

STARRPeaker: Uniform processing and accurate identification of STARR-seq active regions

bioinformatics more details view paper
  • Downloaded 562 times
  • Download rankings, all-time:
    • Site-wide: 19,526 out of 70,744
    • In bioinformatics: 2,892 out of 6,926
  • Year to date:
    • Site-wide: 8,388 out of 70,744
  • Since beginning of last month:
    • Site-wide: 7,908 out of 70,744

SVFX: a machine-learning framework to quantify the pathogenicity of structural variants

bioinformatics more details view paper
  • Downloaded 480 times
  • Download rankings, all-time:
    • Site-wide: 23,933 out of 70,744
    • In bioinformatics: 3,344 out of 6,926
  • Year to date:
    • Site-wide: 15,916 out of 70,744
  • Since beginning of last month:
    • Site-wide: 12,378 out of 70,744

SigLASSO: a LASSO approach jointly optimizing sampling likelihood and cancer mutation signatures

bioinformatics more details view paper
  • Downloaded 441 times
  • Download rankings, all-time:
    • Site-wide: 26,469 out of 70,744
    • In bioinformatics: 3,593 out of 6,926
  • Year to date:
    • Site-wide: 20,692 out of 70,744
  • Since beginning of last month:
    • Site-wide: 33,204 out of 70,744

RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins

genomics more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 35,838 out of 70,744
    • In genomics: 3,343 out of 4,722
  • Year to date:
    • Site-wide: 21,033 out of 70,744
  • Since beginning of last month:
    • Site-wide: 42,793 out of 70,744

LESSeq: Local event-based analysis of alternative splicing using RNA-Seq data

bioinformatics more details view paper
  • Downloaded 196 times
  • Download rankings, all-time:
    • Site-wide: 52,432 out of 70,744
    • In bioinformatics: 5,731 out of 6,926
  • Year to date:
    • Site-wide: 8,638 out of 70,744
  • Since beginning of last month:
    • Site-wide: 19,613 out of 70,744

To mock or not: a comprehensive comparison of mock IP and DNA input for ChIP-seq

genomics more details view paper
  • Downloaded 183 times
  • Download rankings, all-time:
    • Site-wide: 54,486 out of 70,744
    • In genomics: 4,192 out of 4,722
  • Year to date:
    • Site-wide: 3,549 out of 70,744
  • Since beginning of last month:
    • Site-wide: 1,306 out of 70,744

Approaches for integrating heterogeneous RNA-seq data reveals cross-talk between microbes and genes in asthmatic patients

genomics more details view paper
  • Downloaded 177 times
  • Download rankings, all-time:
    • Site-wide: 55,403 out of 70,744
    • In genomics: 4,227 out of 4,722
  • Year to date:
    • Site-wide: 31,524 out of 70,744
  • Since beginning of last month:
    • Site-wide: 17,008 out of 70,744

Latent-space embedding of expression data identifies gene signatures from sputum samples of asthmatic patients

bioinformatics more details view paper
  • Downloaded 152 times
  • Download rankings, all-time:
    • Site-wide: 59,114 out of 70,744
    • In bioinformatics: 6,203 out of 6,926
  • Year to date:
    • Site-wide: 54,792 out of 70,744
  • Since beginning of last month:
    • Site-wide: 65,660 out of 70,744

Cyclic and Multilevel Causation in Evolutionary Processes

evolutionary biology more details view paper
  • Downloaded 141 times
  • Download rankings, all-time:
    • Site-wide: 60,799 out of 70,744
    • In evolutionary biology: 4,145 out of 4,632
  • Year to date:
    • Site-wide: 24,800 out of 70,744
  • Since beginning of last month:
    • Site-wide: 28,012 out of 70,744

TopicNet: a framework for measuring transcriptional regulatory network change

bioinformatics more details view paper
  • Downloaded 131 times
  • Download rankings, all-time:
    • Site-wide: 62,179 out of 70,744
    • In bioinformatics: 6,416 out of 6,926
  • Year to date:
    • Site-wide: 3,010 out of 70,744
  • Since beginning of last month:
    • Site-wide: 3,074 out of 70,744

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