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Author: Nir Yosef

Rankings

  • All-time downloads: 66,798 (rank: 588 out of 404,161)
  • Categories:
    • bioinformatics: 31,879 (rank: 76 out of 34,272)
    • cancer biology: 1,938 (rank: 1,859 (tie) out of 28,183)
    • cell biology: 13,886 (rank: 30 out of 30,511)
    • genomics: 11,786 (rank: 1,211 out of 42,763)
    • immunology: 6,318 (rank: 490 out of 23,479)
    • systems biology: 991 (rank: 3,214 (tie) out of 11,761)

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Preprints

The Human Cell Atlas

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Bayesian Inference for a Generative Model of Transcriptome Profiles from Single-cell RNA Sequencing

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Probabilistic Harmonization and Annotation of Single-cell Transcriptomics Data with Deep Generative Models

bioinformatics more details view paper
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Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis

immunology more details view paper
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Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

genomics more details view paper
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Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

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Continuous lineage recording reveals rapid, multidirectional metastasis in a lung cancer xenograft model in mouse

cancer biology more details view paper
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A Joint Model of RNA Expression and Surface Protein Abundance in Single Cells

bioinformatics more details view paper
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Meta-analysis of massive parallel reporter assay enables functional regulatory elements prediction

genomics more details view paper
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Joint probabilistic modeling of paired transcriptome and proteome measurements in single cells

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    • In bioinformatics: 918 out of 8,837
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Deep Generative Models for Detecting Differential Expression in Single Cells

cell biology more details view paper
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Functional Interpretation of Single-Cell Similarity Maps

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Impulse model-based differential expression analysis of time course sequencing data

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FastProject: A Tool for Low-Dimensional Analysis of Single-Cell RNA-Seq Data

genomics more details view paper
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    • In genomics: 965 out of 5,955
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Targeted reconstruction of T cell receptor sequence from single cell RNA-sequencing links CDR3 length to T cell differentiation state

bioinformatics more details view paper
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    • In bioinformatics: 1,078 out of 8,837
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    • Site-wide: 37,045 out of 94,912

Massively parallel characterization of regulatory dynamics during neural induction

genomics more details view paper
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Detecting Zero-Inflated Genes in Single-Cell Transcriptomics Data

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In Silico Modeling of Metabolic State in Single Th17 Cells Reveals Novel Regulators of Inflammation and Autoimmunity

genomics more details view paper
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Coverage-dependent bias creates the appearance of binary splicing in single cells

genomics more details view paper
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    • In genomics: 1,444 out of 5,955
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    • Site-wide: 29,297 out of 94,912

Inference of Single-Cell Phylogenies from Lineage Tracing Data

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    • In bioinformatics: 1,652 out of 8,837
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Mango: Distributed Visualization for Genomic Analysis

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    • Site-wide: 44,971 out of 94,912

Alterations of multiple alveolar macrophage states in chronic obstructive pulmonary disease

systems biology more details view paper
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    • In systems biology: 330 out of 2,425
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SymSim: simulating multi-faceted variability in single cell RNA sequencing

bioinformatics more details view paper
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Metabolic and Epigenomic Regulation of Th17/Treg Balance by the Polyamine Pathway

immunology more details view paper
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Polyamine metabolism regulates the T cell epigenome through hypusination

immunology more details view paper
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Identifying Informative Gene Modules Across Modalities of Single Cell Genomics

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Use antibiotics in cell culture with caution: genome-wide identification of antibiotic-induced changes in gene expression and regulation

genomics more details view paper
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Reconstructing B cell receptor sequences from short-read single cell RNA-sequencing with BRAPeS

bioinformatics more details view paper
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MPRAnalyze - A statistical framework for Massively Parallel Reporter Assays

bioinformatics more details view paper
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Oleic acid Induces Tissue Resident FoxP3 Regulatory T cell Lineage Stability and Suppressive Functions

immunology more details view paper
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Cytoplasmic mRNA decay factors modulate RNA polymerase II processivity in 5' and 3' gene regions in yeast

genomics more details view paper
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Connectivity Problems on Heterogeneous Graphs

bioinformatics more details view paper
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Single-cell transcriptomics of the Drosophila wing disc reveals instructive epithelium-to-myoblast interactions

bioinformatics more details view paper
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