Author: Bas E. Dutilh

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Preprints

Computational Pan-Genomics: Status, Promises and Challenges

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Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses

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Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

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Bridging the divide: bacteria synthesizing archaeal membrane lipids

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Contig annotation tool CAT robustly classifies assembled metagenomic contigs and long sequences

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Bacterial Zombies And Ghosts: Production Of Inactivated Gram-Positive And Gram-Negative Species With Preserved Cellular Morphology And Cytoplasmic Content

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Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Bacteriophages

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Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT

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FOCUS2: agile and sensitive classification of metagenomics data using a reduced database

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Bottom-up ecology of the human microbiome: from metagenomes to metabolomes

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Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype

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Induction of differentiation and metabolic reprogramming in human hepatoma cells by adult human serum

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Quantifying the impact of Human Leukocyte Antigen on the human gut microbiome

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A symbiont phage protein aids in eukaryote immune evasion

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Long identical sequences found in multiple bacterial genomes reveal frequent and widespread exchange of genetic material between distant species

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Prophages are associated with extensive CRISPR-Cas auto-immunity

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The gill-associated symbiont microbiome is a main source of woody-plant polysaccharide hydrolase genes and secondary metabolite gene clusters in Neoteredo reynei, a unique shipworm from south Atlantic mangroves.

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OGRE: Overlap Graph-based metagenomic Read clustEring

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Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering

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Optimized DNA isolation method for microbiome analysis of human tissues

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Nutrition or nature: disentangling the complex forces shaping prokaryote pan-genomes

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