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Author: Bas E. Dutilh

Rankings

  • All-time downloads: 22,437 (rank: 6,490 )
  • Categories:
    • bioinformatics: 6,600 (rank: 1,434 (tie) )
    • cell biology: 719 (rank: 11,004 (tie) )
    • ecology: 1,876 (rank: 1,466 (tie) )
    • evolutionary biology: 1,742 (rank: 2,871 (tie) )
    • genetics: 888 (rank: 15,916 (tie) )
    • genomics: 4,917 (rank: 4,382 )
    • microbiology: 5,695 (rank: 2,004 )

Downloads per author, site-wide

Preprints

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,549 times
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    • Site-wide: 1,978
    • In genomics: 225
  • Year to date:
    • Site-wide: 22,788
  • Since beginning of last month:
    • Site-wide: 16,769

Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses

ecology more details view paper
  • Downloaded 1,876 times
  • Download rankings, all-time:
    • Site-wide: 7,191
    • In ecology: 86
  • Year to date:
    • Site-wide: 47,990
  • Since beginning of last month:
    • Site-wide: 35,192

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

microbiology more details view paper
  • Downloaded 1,689 times
  • Download rankings, all-time:
    • Site-wide: 8,426
    • In microbiology: 459
  • Year to date:
    • Site-wide: 56,720
  • Since beginning of last month:
    • Site-wide: 53,911

Bridging the divide: bacteria synthesizing archaeal membrane lipids

evolutionary biology more details view paper
  • Downloaded 1,594 times
  • Download rankings, all-time:
    • Site-wide: 9,217
    • In evolutionary biology: 314
  • Year to date:
    • Site-wide: 16,994
  • Since beginning of last month:
    • Site-wide: 71,213

Contig annotation tool CAT robustly classifies assembled metagenomic contigs and long sequences

bioinformatics more details view paper
  • Downloaded 1,504 times
  • Download rankings, all-time:
    • Site-wide: 10,041
    • In bioinformatics: 1,275
  • Year to date:
    • Site-wide: 41,720
  • Since beginning of last month:
    • Site-wide: 24,453

Bacterial Zombies And Ghosts: Production Of Inactivated Gram-Positive And Gram-Negative Species With Preserved Cellular Morphology And Cytoplasmic Content

microbiology more details view paper
  • Downloaded 1,460 times
  • Download rankings, all-time:
    • Site-wide: 10,467
    • In microbiology: 583
  • Year to date:
    • Site-wide: 28,008
  • Since beginning of last month:
    • Site-wide: 16,232

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Bacteriophages

microbiology more details view paper
  • Downloaded 1,311 times
  • Download rankings, all-time:
    • Site-wide: 12,340
    • In microbiology: 685
  • Year to date:
    • Site-wide: 47,046
  • Since beginning of last month:
    • Site-wide: 52,760

Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT

bioinformatics more details view paper
  • Downloaded 1,110 times
  • Download rankings, all-time:
    • Site-wide: 15,858
    • In bioinformatics: 1,981
  • Year to date:
    • Site-wide: 24,463
  • Since beginning of last month:
    • Site-wide: 30,593

FOCUS2: agile and sensitive classification of metagenomics data using a reduced database

bioinformatics more details view paper
  • Downloaded 942 times
  • Download rankings, all-time:
    • Site-wide: 20,204
    • In bioinformatics: 2,495
  • Year to date:
    • Site-wide: 83,198
  • Since beginning of last month:
    • Site-wide: 80,623

Bottom-up ecology of the human microbiome: from metagenomes to metabolomes

bioinformatics more details view paper
  • Downloaded 939 times
  • Download rankings, all-time:
    • Site-wide: 20,301
    • In bioinformatics: 2,507
  • Year to date:
    • Site-wide: 109,315
  • Since beginning of last month:
    • Site-wide: 77,210

Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype

genetics more details view paper
  • Downloaded 888 times
  • Download rankings, all-time:
    • Site-wide: 22,045
    • In genetics: 1,110
  • Year to date:
    • Site-wide: 69,031
  • Since beginning of last month:
    • Site-wide: 96,650

Induction of differentiation and metabolic reprogramming in human hepatoma cells by adult human serum

cell biology more details view paper
  • Downloaded 719 times
  • Download rankings, all-time:
    • Site-wide: 29,632
    • In cell biology: 1,147
  • Year to date:
    • Site-wide: 48,809
  • Since beginning of last month:
    • Site-wide: 33,780

Quantifying the impact of Human Leukocyte Antigen on the human gut microbiome

bioinformatics more details view paper
  • Downloaded 577 times
  • Download rankings, all-time:
    • Site-wide: 39,470
    • In bioinformatics: 4,372
  • Year to date:
    • Site-wide: 23,496
  • Since beginning of last month:
    • Site-wide: 51,046

A symbiont phage protein aids in eukaryote immune evasion

microbiology more details view paper
  • Downloaded 559 times
  • Download rankings, all-time:
    • Site-wide: 41,124
    • In microbiology: 2,537
  • Year to date:
    • Site-wide: 56,967
  • Since beginning of last month:
    • Site-wide: 102,309

Long identical sequences found in multiple bacterial genomes reveal frequent and widespread exchange of genetic material between distant species

bioinformatics more details view paper
  • Downloaded 552 times
  • Download rankings, all-time:
    • Site-wide: 41,731
    • In bioinformatics: 4,544
  • Year to date:
    • Site-wide: 18,965
  • Since beginning of last month:
    • Site-wide: 39,531

Prophages are associated with extensive CRISPR-Cas auto-immunity

bioinformatics more details view paper
  • Downloaded 518 times
  • Download rankings, all-time:
    • Site-wide: 45,040
    • In bioinformatics: 4,820
  • Year to date:
    • Site-wide: 55,693
  • Since beginning of last month:
    • Site-wide: 43,515

The gill-associated symbiont microbiome is a main source of woody-plant polysaccharide hydrolase genes and secondary metabolite gene clusters in Neoteredo reynei, a unique shipworm from south Atlantic mangroves.

microbiology more details view paper
  • Downloaded 489 times
  • Download rankings, all-time:
    • Site-wide: 48,280
    • In microbiology: 3,082
  • Year to date:
    • Site-wide: 105,649
  • Since beginning of last month:
    • Site-wide: 81,175

OGRE: Overlap Graph-based metagenomic Read clustEring

bioinformatics more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 51,918
    • In bioinformatics: 5,421
  • Year to date:
    • Site-wide: 74,860
  • Since beginning of last month:
    • Site-wide: 93,654

Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering

genomics more details view paper
  • Downloaded 368 times
  • Download rankings, all-time:
    • Site-wide: 64,783
    • In genomics: 4,636
  • Year to date:
    • Site-wide: 36,436
  • Since beginning of last month:
    • Site-wide: 66,659

Optimized DNA isolation method for microbiome analysis of human tissues

microbiology more details view paper
  • Downloaded 187 times
  • Download rankings, all-time:
    • Site-wide: 100,070
    • In microbiology: 7,496
  • Year to date:
    • Site-wide: 13,143
  • Since beginning of last month:
    • Site-wide: 18,930

Nutrition or nature: disentangling the complex forces shaping prokaryote pan-genomes

evolutionary biology more details view paper
  • Downloaded 148 times
  • Download rankings, all-time:
    • Site-wide: 107,700
    • In evolutionary biology: 5,752
  • Year to date:
    • Site-wide: 31,896
  • Since beginning of last month:
    • Site-wide: 3,644

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