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Author: Bas E. Dutilh

Rankings

  • All-time downloads: 21,323 (rank: 3,062 out of 428,374)
  • Categories:
    • bioinformatics: 6,231 (rank: 1,439 out of 36,286)
    • cell biology: 683 (rank: 10,189 (tie) out of 33,068)
    • ecology: 1,832 (rank: 1,360 (tie) out of 18,713)
    • evolutionary biology: 1,540 (rank: 3,067 (tie) out of 21,835)
    • genetics: 865 (rank: 15,349 (tie) out of 38,071)
    • genomics: 4,795 (rank: 4,211 (tie) out of 44,724)
    • microbiology: 5,377 (rank: 1,783 out of 50,987)

Downloads per author, site-wide

Preprints

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
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    • In genomics: 216 out of 6,281
  • Year to date:
    • Site-wide: 14,819 out of 101,416
  • Since beginning of last month:
    • Site-wide: 11,539 out of 101,416

Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses

ecology more details view paper
  • Downloaded 1,832 times
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    • Site-wide: 4,913 out of 101,416
    • In ecology: 84 out of 4,431
  • Year to date:
    • Site-wide: 26,104 out of 101,416
  • Since beginning of last month:
    • Site-wide: 53,966 out of 101,416

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

microbiology more details view paper
  • Downloaded 1,655 times
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    • Site-wide: 5,781 out of 101,416
    • In microbiology: 391 out of 9,010
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    • Site-wide: 42,141 out of 101,416
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    • Site-wide: 66,047 out of 101,416

Bridging the divide: bacteria synthesizing archaeal membrane lipids

evolutionary biology more details view paper
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    • Site-wide: 6,563 out of 101,416
    • In evolutionary biology: 302 out of 6,039
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    • Site-wide: 14,912 out of 101,416
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    • Site-wide: 24,479 out of 101,416

Contig annotation tool CAT robustly classifies assembled metagenomic contigs and long sequences

bioinformatics more details view paper
  • Downloaded 1,431 times
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    • Site-wide: 7,409 out of 101,416
    • In bioinformatics: 1,256 out of 9,295
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    • Site-wide: 18,284 out of 101,416
  • Since beginning of last month:
    • Site-wide: 33,914 out of 101,416

Bacterial Zombies And Ghosts: Production Of Inactivated Gram-Positive And Gram-Negative Species With Preserved Cellular Morphology And Cytoplasmic Content

microbiology more details view paper
  • Downloaded 1,367 times
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    • Site-wide: 8,013 out of 101,416
    • In microbiology: 547 out of 9,010
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    • Site-wide: 18,384 out of 101,416

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Bacteriophages

microbiology more details view paper
  • Downloaded 1,271 times
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    • In microbiology: 619 out of 9,010
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    • Site-wide: 61,722 out of 101,416

Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT

bioinformatics more details view paper
  • Downloaded 1,054 times
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    • Site-wide: 12,359 out of 101,416
    • In bioinformatics: 1,941 out of 9,295
  • Year to date:
    • Site-wide: 20,412 out of 101,416
  • Since beginning of last month:
    • Site-wide: 22,605 out of 101,416

FOCUS2: agile and sensitive classification of metagenomics data using a reduced database

bioinformatics more details view paper
  • Downloaded 923 times
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    • Site-wide: 15,317 out of 101,416
    • In bioinformatics: 2,334 out of 9,295
  • Year to date:
    • Site-wide: 85,196 out of 101,416
  • Since beginning of last month:
    • Site-wide: 84,985 out of 101,416

Bottom-up ecology of the human microbiome: from metagenomes to metabolomes

bioinformatics more details view paper
  • Downloaded 909 times
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    • Site-wide: 15,700 out of 101,416
    • In bioinformatics: 2,383 out of 9,295
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  • Since beginning of last month:
    • Site-wide: 62,338 out of 101,416

Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype

genetics more details view paper
  • Downloaded 865 times
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    • Site-wide: 16,936 out of 101,416
    • In genetics: 1,057 out of 5,038
  • Year to date:
    • Site-wide: 54,635 out of 101,416
  • Since beginning of last month:
    • Site-wide: 54,250 out of 101,416

Induction of differentiation and metabolic reprogramming in human hepatoma cells by adult human serum

cell biology more details view paper
  • Downloaded 683 times
  • Download rankings, all-time:
    • Site-wide: 24,203 out of 101,416
    • In cell biology: 1,085 out of 5,252
  • Year to date:
    • Site-wide: 20,305 out of 101,416
  • Since beginning of last month:
    • Site-wide: 86,002 out of 101,416

A symbiont phage protein aids in eukaryote immune evasion

microbiology more details view paper
  • Downloaded 539 times
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    • Site-wide: 33,236 out of 101,416
    • In microbiology: 2,309 out of 9,010
  • Year to date:
    • Site-wide: 38,823 out of 101,416
  • Since beginning of last month:
    • Site-wide: 45,693 out of 101,416

Quantifying the impact of Human Leukocyte Antigen on the human gut microbiome

bioinformatics more details view paper
  • Downloaded 525 times
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    • Site-wide: 34,384 out of 101,416
    • In bioinformatics: 4,369 out of 9,295
  • Year to date:
    • Site-wide: 7,073 out of 101,416
  • Since beginning of last month:
    • Site-wide: 30,347 out of 101,416

Long identical sequences found in multiple bacterial genomes reveal frequent and widespread exchange of genetic material between distant species

bioinformatics more details view paper
  • Downloaded 485 times
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    • Site-wide: 37,904 out of 101,416
    • In bioinformatics: 4,691 out of 9,295
  • Year to date:
    • Site-wide: 8,029 out of 101,416
  • Since beginning of last month:
    • Site-wide: 11,964 out of 101,416

Prophages are associated with extensive CRISPR-Cas auto-immunity

bioinformatics more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 39,855 out of 101,416
    • In bioinformatics: 4,857 out of 9,295
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    • Site-wide: 8,610 out of 101,416
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    • Site-wide: 14,937 out of 101,416

The gill-associated symbiont microbiome is a main source of woody-plant polysaccharide hydrolase genes and secondary metabolite gene clusters in Neoteredo reynei, a unique shipworm from south Atlantic mangroves.

microbiology more details view paper
  • Downloaded 461 times
  • Download rankings, all-time:
    • Site-wide: 40,385 out of 101,416
    • In microbiology: 2,869 out of 9,010
  • Year to date:
    • Site-wide: 52,544 out of 101,416
  • Since beginning of last month:
    • Site-wide: 52,887 out of 101,416

OGRE: Overlap Graph-based metagenomic Read clustEring

bioinformatics more details view paper
  • Downloaded 438 times
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    • Site-wide: 42,712 out of 101,416
    • In bioinformatics: 5,133 out of 9,295
  • Year to date:
    • Site-wide: 65,085 out of 101,416
  • Since beginning of last month:
    • Site-wide: 85,126 out of 101,416

Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering

genomics more details view paper
  • Downloaded 337 times
  • Download rankings, all-time:
    • Site-wide: 55,611 out of 101,416
    • In genomics: 4,539 out of 6,281
  • Year to date:
    • Site-wide: 35,306 out of 101,416
  • Since beginning of last month:
    • Site-wide: 63,067 out of 101,416

Optimized DNA isolation method for microbiome analysis of human tissues

microbiology more details view paper
  • Downloaded 84 times
  • Download rankings, all-time:
    • Site-wide: 95,784 out of 101,416
    • In microbiology: 8,278 out of 9,010
  • Year to date:
    • Site-wide: 74,095 out of 101,416
  • Since beginning of last month:
    • Site-wide: 17,863 out of 101,416
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