Author: Rongxin Fang

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Preprints

SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

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  • Site-wide: 893
  • In bioinformatics: 50
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  • Site-wide: 994
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  • Site-wide: 812

Single nucleus analysis of the chromatin landscape in mouse forebrain development

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  • Site-wide: 1,796
  • In genomics: 183
• Year to date:
  • Site-wide: 32,100
• Since beginning of last month:
  • Site-wide: 29,895

Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells

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  • Site-wide: 1,811
  • In genomics: 186
• Year to date:
  • Site-wide: 36,164
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  • Site-wide: None

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

• Downloaded 4,808 times
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  • Site-wide: 1,963
  • In neuroscience: 114
• Year to date:
  • Site-wide: 1,397
• Since beginning of last month:
  • Site-wide: 1,743

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

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  • Site-wide: 2,291
  • In neuroscience: 150
• Year to date:
  • Site-wide: 1,436
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  • Site-wide: 1,183

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

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  • Site-wide: 2,966
  • In neuroscience: 228
• Year to date:
  • Site-wide: 1,928
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  • Site-wide: 2,034

A multimodal cell census and atlas of the mammalian primary motor cortex

• Downloaded 3,265 times
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  • Site-wide: 3,442
  • In neuroscience: 280
• Year to date:
  • Site-wide: 1,475
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  • Site-wide: 1,840

Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

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  • Site-wide: 3,689
  • In genomics: 428
• Year to date:
  • Site-wide: 3,121
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  • Site-wide: 2,734

3D Chromatin Architecture Remodeling during Human Cardiomyocyte Differentiation Reveals A Role Of HERV-H In Demarcating Chromatin Domains

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  • Site-wide: 3,832
  • In genomics: 447
• Year to date:
  • Site-wide: 22,734
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  • Site-wide: 19,468

MAPPING OF LONG-RANGE CHROMATIN INTERACTIONS BY PROXIMITY LIGATION ASSISTED CHIP-SEQ

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  • Site-wide: 4,128
  • In genomics: 480
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  • Site-wide: 37,381
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Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

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  • In genomics: 571
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  • Site-wide: 40,708
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  • Site-wide: 34,181

Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

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  • Site-wide: 5,358
  • In genomics: 632
• Year to date:
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Single cell chromatin accessibility reveals pancreatic islet cell type- and state-specific regulatory programs of diabetes risk

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  • Site-wide: 5,426
  • In genomics: 636
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  • Site-wide: 5,776
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  • Site-wide: 4,560

Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

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  • Site-wide: 7,823
  • In genomics: 875
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  • Site-wide: 80,263

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

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  • Site-wide: 16,149
  • In bioinformatics: 1,982
• Year to date:
  • Site-wide: 85,932
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  • Site-wide: 83,875

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

• Downloaded 426 times
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  • Site-wide: 59,129
  • In bioinformatics: 5,902
• Year to date:
  • Site-wide: 6,017
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  • Site-wide: 18,571