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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,354 bioRxiv papers from 296,792 authors.

Author: Chen-Shan Chin

Rankings

  • All-time downloads: 54,638 (rank: 245 out of 296,792)
  • Categories:
    • bioinformatics: 23,161 (rank: 74 out of 25,877)
    • genomics: 31,477 (rank: 184 out of 33,725)

Downloads per author, site-wide

Preprints

Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing

bioinformatics more details view paper
  • Downloaded 10,932 times
  • Download rankings, all-time:
    • Site-wide: 100 out of 67,354
    • In bioinformatics: 17 out of 6,638
  • Year to date:
    • Site-wide: 3,054 out of 67,354
  • Since beginning of last month:
    • Site-wide: 5,370 out of 67,354

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 10,156 times
  • Download rankings, all-time:
    • Site-wide: 111 out of 67,354
    • In genomics: 35 out of 4,574
  • Year to date:
    • Site-wide: 21 out of 67,354
  • Since beginning of last month:
    • Site-wide: 536 out of 67,354

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 7,961 times
  • Download rankings, all-time:
    • Site-wide: 186 out of 67,354
    • In genomics: 54 out of 4,574
  • Year to date:
    • Site-wide: 728 out of 67,354
  • Since beginning of last month:
    • Site-wide: 13,217 out of 67,354

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
  • Downloaded 6,468 times
  • Download rankings, all-time:
    • Site-wide: 277 out of 67,354
    • In bioinformatics: 45 out of 6,638
  • Year to date:
    • Site-wide: 9,139 out of 67,354
  • Since beginning of last month:
    • Site-wide: 14,826 out of 67,354

Improved maize reference genome with single molecule technologies

genomics more details view paper
  • Downloaded 5,304 times
  • Download rankings, all-time:
    • Site-wide: 398 out of 67,354
    • In genomics: 103 out of 4,574
  • Year to date:
    • Site-wide: 17,640 out of 67,354
  • Since beginning of last month:
    • Site-wide: 20,787 out of 67,354

Ribbon: Visualizing complex genome alignments and structural variation

bioinformatics more details view paper
  • Downloaded 2,666 times
  • Download rankings, all-time:
    • Site-wide: 1,457 out of 67,354
    • In bioinformatics: 286 out of 6,638
  • Year to date:
    • Site-wide: 4,293 out of 67,354
  • Since beginning of last month:
    • Site-wide: 4,609 out of 67,354

Long-read, whole genome shotgun sequence data for five model organisms

genomics more details view paper
  • Downloaded 1,837 times
  • Download rankings, all-time:
    • Site-wide: 2,813 out of 67,354
    • In genomics: 561 out of 4,574
  • Year to date:
    • Site-wide: 33,482 out of 67,354
  • Since beginning of last month:
    • Site-wide: 54,455 out of 67,354

Human Genome Assembly in 100 Minutes

bioinformatics more details view paper
  • Downloaded 1,620 times
  • Download rankings, all-time:
    • Site-wide: 3,479 out of 67,354
    • In bioinformatics: 694 out of 6,638
  • Year to date:
    • Site-wide: 818 out of 67,354
  • Since beginning of last month:
    • Site-wide: 797 out of 67,354

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

genomics more details view paper
  • Downloaded 1,539 times
  • Download rankings, all-time:
    • Site-wide: 3,807 out of 67,354
    • In genomics: 704 out of 4,574
  • Year to date:
    • Site-wide: 18,282 out of 67,354
  • Since beginning of last month:
    • Site-wide: 3,521 out of 67,354

De Novo PacBio long-read and phased avian genome assemblies correct and add to genes important in neuroscience research

genomics more details view paper
  • Downloaded 1,511 times
  • Download rankings, all-time:
    • Site-wide: 3,938 out of 67,354
    • In genomics: 714 out of 4,574
  • Year to date:
    • Site-wide: 44,058 out of 67,354
  • Since beginning of last month:
    • Site-wide: 57,771 out of 67,354

Efficient chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
  • Downloaded 1,475 times
  • Download rankings, all-time:
    • Site-wide: 4,101 out of 67,354
    • In bioinformatics: 808 out of 6,638
  • Year to date:
    • Site-wide: 976 out of 67,354
  • Since beginning of last month:
    • Site-wide: 297 out of 67,354

Scaffolding of long read assemblies using long range contact information

genomics more details view paper
  • Downloaded 1,366 times
  • Download rankings, all-time:
    • Site-wide: 4,664 out of 67,354
    • In genomics: 829 out of 4,574
  • Year to date:
    • Site-wide: 47,092 out of 67,354
  • Since beginning of last month:
    • Site-wide: 48,631 out of 67,354

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,195 times
  • Download rankings, all-time:
    • Site-wide: 5,804 out of 67,354
    • In genomics: 978 out of 4,574
  • Year to date:
    • Site-wide: 28,227 out of 67,354
  • Since beginning of last month:
    • Site-wide: 16,650 out of 67,354

Effect of Sequence Depth and Length in Long-read Assembly of the Maize Inbred NC358

genomics more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 33,359 out of 67,354
    • In genomics: 3,188 out of 4,574
  • Year to date:
    • Site-wide: 12,845 out of 67,354
  • Since beginning of last month:
    • Site-wide: 415 out of 67,354

A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex

genomics more details view paper
  • Downloaded 277 times
  • Download rankings, all-time:
    • Site-wide: 38,889 out of 67,354
    • In genomics: 3,477 out of 4,574
  • Year to date:
    • Site-wide: 16,628 out of 67,354
  • Since beginning of last month:
    • Site-wide: 578 out of 67,354

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