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Author: Chen-Shan Chin

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  • All-time downloads: 62,665 (rank: 582 out of 393,182)
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    • bioinformatics: 26,184 (rank: 89 out of 33,444)
    • genomics: 36,481 (rank: 189 out of 41,862)

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Preprints

Benchmarking challenging small variants with linked and long reads

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Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

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Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing

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Multi-platform discovery of haplotype-resolved structural variation in human genomes

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Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

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Improved maize reference genome with single molecule technologies

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Ribbon: Visualizing complex genome alignments and structural variation

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Accurate chromosome-scale haplotype-resolved assembly of human genomes

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Human Genome Assembly in 100 Minutes

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Long-read, whole genome shotgun sequence data for five model organisms

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Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

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De Novo PacBio long-read and phased avian genome assemblies correct and add to genes important in neuroscience research

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Amplification-free long read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

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Scaffolding of long read assemblies using long range contact information

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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

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    • Site-wide: 31,456 out of 92,020

Effect of Sequence Depth and Length in Long-read Assembly of the Maize Inbred NC358

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    • In genomics: 2,164 out of 5,809
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    • Site-wide: 10,706 out of 92,020
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A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex

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    • In genomics: 2,326 out of 5,809
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