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Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 52,452 (rank: 2,419 )
  • Categories:
    • bioinformatics: 17,732 (rank: 300 )
    • cancer biology: 2,389 (rank: 1,771 (tie) )
    • genomics: 32,102 (rank: 263 )
    • infectious diseases: 229 (rank: 31,004 (tie) )

Downloads per author, site-wide

Preprints

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 11,059 times
  • Download rankings, all-time:
    • Site-wide: 606
    • In bioinformatics: 26
  • Year to date:
    • Site-wide: 25,892
  • Since beginning of last month:
    • Site-wide: 16,092

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 8,934 times
  • Download rankings, all-time:
    • Site-wide: 811
    • In genomics: 71
  • Year to date:
    • Site-wide: 7,169
  • Since beginning of last month:
    • Site-wide: 5,450

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 7,160 times
  • Download rankings, all-time:
    • Site-wide: 1,089
    • In genomics: 112
  • Year to date:
    • Site-wide: 40,004
  • Since beginning of last month:
    • Site-wide: 28,661

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,632 times
  • Download rankings, all-time:
    • Site-wide: 1,943
    • In genomics: 217
  • Year to date:
    • Site-wide: 19,888
  • Since beginning of last month:
    • Site-wide: 31,453

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 3,746 times
  • Download rankings, all-time:
    • Site-wide: 2,635
    • In genomics: 319
  • Year to date:
    • Site-wide: 4,627
  • Since beginning of last month:
    • Site-wide: 12,727

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,570 times
  • Download rankings, all-time:
    • Site-wide: 4,562
    • In bioinformatics: 522
  • Year to date:
    • Site-wide: 106,069
  • Since beginning of last month:
    • Site-wide: 102,552

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,389 times
  • Download rankings, all-time:
    • Site-wide: 5,101
    • In cancer biology: 76
  • Year to date:
    • Site-wide: 39,965
  • Since beginning of last month:
    • Site-wide: 65,349

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,388 times
  • Download rankings, all-time:
    • Site-wide: 5,105
    • In genomics: 617
  • Year to date:
    • Site-wide: 118,590
  • Since beginning of last month:
    • Site-wide: 65,637

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,944 times
  • Download rankings, all-time:
    • Site-wide: 6,896
    • In bioinformatics: 865
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 49,434

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,905 times
  • Download rankings, all-time:
    • Site-wide: 7,097
    • In genomics: 808
  • Year to date:
    • Site-wide: 92,936
  • Since beginning of last month:
    • Site-wide: 97,494

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 1,842 times
  • Download rankings, all-time:
    • Site-wide: 7,460
    • In genomics: 846
  • Year to date:
    • Site-wide: 44,181
  • Since beginning of last month:
    • Site-wide: 61,450

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,495 times
  • Download rankings, all-time:
    • Site-wide: 10,225
    • In genomics: 1,154
  • Year to date:
    • Site-wide: 35,840
  • Since beginning of last month:
    • Site-wide: 36,811

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 1,110 times
  • Download rankings, all-time:
    • Site-wide: 16,006
    • In bioinformatics: 1,984
  • Year to date:
    • Site-wide: 71,429
  • Since beginning of last month:
    • Site-wide: 42,060

GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis

bioinformatics more details view paper
  • Downloaded 1,049 times
  • Download rankings, all-time:
    • Site-wide: 17,435
    • In bioinformatics: 2,154
  • Year to date:
    • Site-wide: 36,586
  • Since beginning of last month:
    • Site-wide: 25,744

Detection of the Novel SARS-CoV-2 European Lineage B.1.177 in Ontario, Canada

infectious diseases more details view paper
  • Downloaded 229 times
  • Download rankings, all-time:
    • Site-wide: 91,852
    • In infectious diseases: 3,197
  • Year to date:
    • Site-wide: 24,752
  • Since beginning of last month:
    • Site-wide: 1,973

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