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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,221 bioRxiv papers from 295,976 authors.

Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 45,440 (rank: 324 out of 296,154)
  • Categories:
    • bioinformatics: 15,685 (rank: 132 out of 25,781)
    • cancer biology: 2,043 (rank: 1,048 (tie) out of 18,815)
    • genomics: 27,712 (rank: 213 out of 33,658)

Downloads per author, site-wide

Preprints

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 10,152 times
  • Download rankings, all-time:
    • Site-wide: 112 out of 67,221
    • In bioinformatics: 20 out of 6,627
  • Year to date:
    • Site-wide: 2,124 out of 67,221
  • Since beginning of last month:
    • Site-wide: 4,004 out of 67,221

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 7,259 times
  • Download rankings, all-time:
    • Site-wide: 223 out of 67,221
    • In genomics: 62 out of 4,566
  • Year to date:
    • Site-wide: 141 out of 67,221
  • Since beginning of last month:
    • Site-wide: 237 out of 67,221

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 6,737 times
  • Download rankings, all-time:
    • Site-wide: 258 out of 67,221
    • In genomics: 74 out of 4,566
  • Year to date:
    • Site-wide: 8,491 out of 67,221
  • Since beginning of last month:
    • Site-wide: 7,973 out of 67,221

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,209 times
  • Download rankings, all-time:
    • Site-wide: 620 out of 67,221
    • In genomics: 158 out of 4,566
  • Year to date:
    • Site-wide: 7,148 out of 67,221
  • Since beginning of last month:
    • Site-wide: 25,898 out of 67,221

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 2,600 times
  • Download rankings, all-time:
    • Site-wide: 1,513 out of 67,221
    • In genomics: 339 out of 4,566
  • Year to date:
    • Site-wide: 464 out of 67,221
  • Since beginning of last month:
    • Site-wide: 2,371 out of 67,221

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,459 times
  • Download rankings, all-time:
    • Site-wide: 1,685 out of 67,221
    • In bioinformatics: 337 out of 6,627
  • Year to date:
    • Site-wide: 49,792 out of 67,221
  • Since beginning of last month:
    • Site-wide: 47,337 out of 67,221

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,299 times
  • Download rankings, all-time:
    • Site-wide: 1,909 out of 67,221
    • In genomics: 417 out of 4,566
  • Year to date:
    • Site-wide: 49,252 out of 67,221
  • Since beginning of last month:
    • Site-wide: 43,990 out of 67,221

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,043 times
  • Download rankings, all-time:
    • Site-wide: 2,353 out of 67,221
    • In cancer biology: 56 out of 2,267
  • Year to date:
    • Site-wide: 7,529 out of 67,221
  • Since beginning of last month:
    • Site-wide: 12,171 out of 67,221

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,835 times
  • Download rankings, all-time:
    • Site-wide: 2,807 out of 67,221
    • In genomics: 560 out of 4,566
  • Year to date:
    • Site-wide: 62,475 out of 67,221
  • Since beginning of last month:
    • Site-wide: 63,689 out of 67,221

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,635 times
  • Download rankings, all-time:
    • Site-wide: 3,405 out of 67,221
    • In bioinformatics: 679 out of 6,627
  • Year to date:
    • Site-wide: 5,025 out of 67,221
  • Since beginning of last month:
    • Site-wide: 6,451 out of 67,221

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 1,590 times
  • Download rankings, all-time:
    • Site-wide: 3,582 out of 67,221
    • In genomics: 673 out of 4,566
  • Year to date:
    • Site-wide: 3,792 out of 67,221
  • Since beginning of last month:
    • Site-wide: 15,162 out of 67,221

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,183 times
  • Download rankings, all-time:
    • Site-wide: 5,874 out of 67,221
    • In genomics: 991 out of 4,566
  • Year to date:
    • Site-wide: 30,096 out of 67,221
  • Since beginning of last month:
    • Site-wide: 26,937 out of 67,221

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 970 times
  • Download rankings, all-time:
    • Site-wide: 8,122 out of 67,221
    • In bioinformatics: 1,434 out of 6,627
  • Year to date:
    • Site-wide: 35,451 out of 67,221
  • Since beginning of last month:
    • Site-wide: 51,463 out of 67,221

GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis

bioinformatics more details view paper
  • Downloaded 469 times
  • Download rankings, all-time:
    • Site-wide: 22,862 out of 67,221
    • In bioinformatics: 3,252 out of 6,627
  • Year to date:
    • Site-wide: 7,152 out of 67,221
  • Since beginning of last month:
    • Site-wide: 13,655 out of 67,221

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