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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,896 bioRxiv papers from 321,557 authors.

Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 47,012 (rank: 376 out of 321,602)
  • Categories:
    • bioinformatics: 16,124 (rank: 154 out of 27,847)
    • cancer biology: 2,155 (rank: 1,105 (tie) out of 21,229)
    • genomics: 28,733 (rank: 220 out of 35,811)

Downloads per author, site-wide

Preprints

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 10,327 times
  • Download rankings, all-time:
    • Site-wide: 138 out of 73,896
    • In bioinformatics: 21 out of 7,186
  • Year to date:
    • Site-wide: 6,043 out of 73,896
  • Since beginning of last month:
    • Site-wide: 6,043 out of 73,896

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 7,706 times
  • Download rankings, all-time:
    • Site-wide: 242 out of 73,896
    • In genomics: 60 out of 4,893
  • Year to date:
    • Site-wide: 1,133 out of 73,896
  • Since beginning of last month:
    • Site-wide: 1,133 out of 73,896

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 6,837 times
  • Download rankings, all-time:
    • Site-wide: 297 out of 73,896
    • In genomics: 76 out of 4,893
  • Year to date:
    • Site-wide: 13,757 out of 73,896
  • Since beginning of last month:
    • Site-wide: 13,757 out of 73,896

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,273 times
  • Download rankings, all-time:
    • Site-wide: 683 out of 73,896
    • In genomics: 164 out of 4,893
  • Year to date:
    • Site-wide: 16,496 out of 73,896
  • Since beginning of last month:
    • Site-wide: 16,496 out of 73,896

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 2,858 times
  • Download rankings, all-time:
    • Site-wide: 1,452 out of 73,896
    • In genomics: 326 out of 4,893
  • Year to date:
    • Site-wide: 2,252 out of 73,896
  • Since beginning of last month:
    • Site-wide: 2,252 out of 73,896

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,480 times
  • Download rankings, all-time:
    • Site-wide: 1,881 out of 73,896
    • In bioinformatics: 375 out of 7,186
  • Year to date:
    • Site-wide: 54,133 out of 73,896
  • Since beginning of last month:
    • Site-wide: 54,133 out of 73,896

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,319 times
  • Download rankings, all-time:
    • Site-wide: 2,118 out of 73,896
    • In genomics: 446 out of 4,893
  • Year to date:
    • Site-wide: 69,828 out of 73,896
  • Since beginning of last month:
    • Site-wide: 69,828 out of 73,896

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,155 times
  • Download rankings, all-time:
    • Site-wide: 2,402 out of 73,896
    • In cancer biology: 57 out of 2,532
  • Year to date:
    • Site-wide: 8,581 out of 73,896
  • Since beginning of last month:
    • Site-wide: 8,581 out of 73,896

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,850 times
  • Download rankings, all-time:
    • Site-wide: 3,119 out of 73,896
    • In genomics: 610 out of 4,893
  • Year to date:
    • Site-wide: 68,238 out of 73,896
  • Since beginning of last month:
    • Site-wide: 68,238 out of 73,896

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,716 times
  • Download rankings, all-time:
    • Site-wide: 3,545 out of 73,896
    • In bioinformatics: 698 out of 7,186
  • Year to date:
    • Site-wide: 11,829 out of 73,896
  • Since beginning of last month:
    • Site-wide: 11,829 out of 73,896

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 1,656 times
  • Download rankings, all-time:
    • Site-wide: 3,769 out of 73,896
    • In genomics: 687 out of 4,893
  • Year to date:
    • Site-wide: 15,744 out of 73,896
  • Since beginning of last month:
    • Site-wide: 15,744 out of 73,896

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,234 times
  • Download rankings, all-time:
    • Site-wide: 6,202 out of 73,896
    • In genomics: 1,021 out of 4,893
  • Year to date:
    • Site-wide: 24,570 out of 73,896
  • Since beginning of last month:
    • Site-wide: 24,570 out of 73,896

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 995 times
  • Download rankings, all-time:
    • Site-wide: 8,841 out of 73,896
    • In bioinformatics: 1,527 out of 7,186
  • Year to date:
    • Site-wide: 43,698 out of 73,896
  • Since beginning of last month:
    • Site-wide: 43,698 out of 73,896

GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis

bioinformatics more details view paper
  • Downloaded 606 times
  • Download rankings, all-time:
    • Site-wide: 18,742 out of 73,896
    • In bioinformatics: 2,810 out of 7,186
  • Year to date:
    • Site-wide: 7,750 out of 73,896
  • Since beginning of last month:
    • Site-wide: 7,750 out of 73,896

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