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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,472 bioRxiv papers from 277,337 authors.

Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 43,899 (rank: 319 out of 277,417)
  • Categories:
    • bioinformatics: 15,368 (rank: 120 out of 24,391)
    • cancer biology: 1,997 (rank: 939 (tie) out of 17,187)
    • genomics: 26,534 (rank: 206 out of 31,917)

Downloads per author, site-wide

Preprints

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 10,012 times
  • Download rankings, all-time:
    • Site-wide: 106 out of 62,482
    • In bioinformatics: 20 out of 6,231
  • Year to date:
    • Site-wide: 2,117 out of 62,482
  • Since beginning of last month:
    • Site-wide: 1,839 out of 62,482

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 6,627 times
  • Download rankings, all-time:
    • Site-wide: 247 out of 62,482
    • In genomics: 71 out of 4,297
  • Year to date:
    • Site-wide: 10,503 out of 62,482
  • Since beginning of last month:
    • Site-wide: 15,441 out of 62,482

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 6,586 times
  • Download rankings, all-time:
    • Site-wide: 249 out of 62,482
    • In genomics: 72 out of 4,297
  • Year to date:
    • Site-wide: 142 out of 62,482
  • Since beginning of last month:
    • Site-wide: 328 out of 62,482

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,173 times
  • Download rankings, all-time:
    • Site-wide: 576 out of 62,482
    • In genomics: 152 out of 4,297
  • Year to date:
    • Site-wide: 6,160 out of 62,482
  • Since beginning of last month:
    • Site-wide: 12,266 out of 62,482

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,448 times
  • Download rankings, all-time:
    • Site-wide: 1,553 out of 62,482
    • In bioinformatics: 308 out of 6,231
  • Year to date:
    • Site-wide: 44,490 out of 62,482
  • Since beginning of last month:
    • Site-wide: 41,084 out of 62,482

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 2,365 times
  • Download rankings, all-time:
    • Site-wide: 1,652 out of 62,482
    • In genomics: 367 out of 4,297
  • Year to date:
    • Site-wide: 432 out of 62,482
  • Since beginning of last month:
    • Site-wide: 1,487 out of 62,482

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,275 times
  • Download rankings, all-time:
    • Site-wide: 1,766 out of 62,482
    • In genomics: 392 out of 4,297
  • Year to date:
    • Site-wide: 48,596 out of 62,482
  • Since beginning of last month:
    • Site-wide: 35,509 out of 62,482

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 1,997 times
  • Download rankings, all-time:
    • Site-wide: 2,247 out of 62,482
    • In cancer biology: 52 out of 2,055
  • Year to date:
    • Site-wide: 6,754 out of 62,482
  • Since beginning of last month:
    • Site-wide: 14,048 out of 62,482

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,827 times
  • Download rankings, all-time:
    • Site-wide: 2,599 out of 62,482
    • In genomics: 528 out of 4,297
  • Year to date:
    • Site-wide: 56,926 out of 62,482
  • Since beginning of last month:
    • Site-wide: 41,903 out of 62,482

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,545 times
  • Download rankings, all-time:
    • Site-wide: 3,449 out of 62,482
    • In bioinformatics: 698 out of 6,231
  • Year to date:
    • Site-wide: 5,051 out of 62,482
  • Since beginning of last month:
    • Site-wide: 2,766 out of 62,482

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 1,525 times
  • Download rankings, all-time:
    • Site-wide: 3,523 out of 62,482
    • In genomics: 669 out of 4,297
  • Year to date:
    • Site-wide: 3,416 out of 62,482
  • Since beginning of last month:
    • Site-wide: 20,672 out of 62,482

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,156 times
  • Download rankings, all-time:
    • Site-wide: 5,562 out of 62,482
    • In genomics: 941 out of 4,297
  • Year to date:
    • Site-wide: 28,540 out of 62,482
  • Since beginning of last month:
    • Site-wide: 13,412 out of 62,482

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 955 times
  • Download rankings, all-time:
    • Site-wide: 7,582 out of 62,482
    • In bioinformatics: 1,363 out of 6,231
  • Year to date:
    • Site-wide: 31,512 out of 62,482
  • Since beginning of last month:
    • Site-wide: 47,017 out of 62,482

GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis

bioinformatics more details view paper
  • Downloaded 408 times
  • Download rankings, all-time:
    • Site-wide: 24,198 out of 62,482
    • In bioinformatics: 3,385 out of 6,231
  • Year to date:
    • Site-wide: 6,778 out of 62,482
  • Since beginning of last month:
    • Site-wide: 246 out of 62,482

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