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Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 49,072 (rank: 695 out of 365,213)
  • Categories:
    • bioinformatics: 16,771 (rank: 183 out of 31,495)
    • cancer biology: 2,295 (rank: 1,276 (tie) out of 24,792)
    • genomics: 30,006 (rank: 246 out of 39,329)

Downloads per author, site-wide

Preprints

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 10,619 times
  • Download rankings, all-time:
    • Site-wide: 200 out of 84,908
    • In bioinformatics: 24 out of 8,136
  • Year to date:
    • Site-wide: 4,257 out of 84,908
  • Since beginning of last month:
    • Site-wide: 6,051 out of 84,908

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 8,178 times
  • Download rankings, all-time:
    • Site-wide: 312 out of 84,908
    • In genomics: 63 out of 5,475
  • Year to date:
    • Site-wide: 1,609 out of 84,908
  • Since beginning of last month:
    • Site-wide: 2,371 out of 84,908

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 6,970 times
  • Download rankings, all-time:
    • Site-wide: 398 out of 84,908
    • In genomics: 85 out of 5,475
  • Year to date:
    • Site-wide: 13,675 out of 84,908
  • Since beginning of last month:
    • Site-wide: 12,508 out of 84,908

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,449 times
  • Download rankings, all-time:
    • Site-wide: 865 out of 84,908
    • In genomics: 184 out of 5,475
  • Year to date:
    • Site-wide: 10,427 out of 84,908
  • Since beginning of last month:
    • Site-wide: 14,746 out of 84,908

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 3,153 times
  • Download rankings, all-time:
    • Site-wide: 1,566 out of 84,908
    • In genomics: 329 out of 5,475
  • Year to date:
    • Site-wide: 3,070 out of 84,908
  • Since beginning of last month:
    • Site-wide: 3,640 out of 84,908

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,514 times
  • Download rankings, all-time:
    • Site-wide: 2,332 out of 84,908
    • In bioinformatics: 432 out of 8,136
  • Year to date:
    • Site-wide: 62,712 out of 84,908
  • Since beginning of last month:
    • Site-wide: 51,540 out of 84,908

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,345 times
  • Download rankings, all-time:
    • Site-wide: 2,635 out of 84,908
    • In genomics: 513 out of 5,475
  • Year to date:
    • Site-wide: 77,949 out of 84,908
  • Since beginning of last month:
    • Site-wide: 61,745 out of 84,908

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,295 times
  • Download rankings, all-time:
    • Site-wide: 2,725 out of 84,908
    • In cancer biology: 62 out of 2,974
  • Year to date:
    • Site-wide: 10,689 out of 84,908
  • Since beginning of last month:
    • Site-wide: 17,860 out of 84,908

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,871 times
  • Download rankings, all-time:
    • Site-wide: 3,827 out of 84,908
    • In genomics: 683 out of 5,475
  • Year to date:
    • Site-wide: 80,617 out of 84,908
  • Since beginning of last month:
    • Site-wide: 67,963 out of 84,908

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,824 times
  • Download rankings, all-time:
    • Site-wide: 3,998 out of 84,908
    • In bioinformatics: 745 out of 8,136
  • Year to date:
    • Site-wide: 15,712 out of 84,908
  • Since beginning of last month:
    • Site-wide: 14,442 out of 84,908

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 1,733 times
  • Download rankings, all-time:
    • Site-wide: 4,353 out of 84,908
    • In genomics: 750 out of 5,475
  • Year to date:
    • Site-wide: 23,464 out of 84,908
  • Since beginning of last month:
    • Site-wide: 13,083 out of 84,908

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,307 times
  • Download rankings, all-time:
    • Site-wide: 6,950 out of 84,908
    • In genomics: 1,097 out of 5,475
  • Year to date:
    • Site-wide: 28,629 out of 84,908
  • Since beginning of last month:
    • Site-wide: 29,468 out of 84,908

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 1,035 times
  • Download rankings, all-time:
    • Site-wide: 10,238 out of 84,908
    • In bioinformatics: 1,698 out of 8,136
  • Year to date:
    • Site-wide: 53,136 out of 84,908
  • Since beginning of last month:
    • Site-wide: 50,293 out of 84,908

GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis

bioinformatics more details view paper
  • Downloaded 779 times
  • Download rankings, all-time:
    • Site-wide: 15,919 out of 84,908
    • In bioinformatics: 2,456 out of 8,136
  • Year to date:
    • Site-wide: 8,287 out of 84,908
  • Since beginning of last month:
    • Site-wide: 12,412 out of 84,908

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