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Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 53,710 (rank: 2,576 )
  • Categories:
    • bioinformatics: 18,113 (rank: 307 )
    • cancer biology: 2,459 (rank: 2,043 (tie) )
    • genomics: 32,776 (rank: 274 )
    • infectious diseases: 362 (rank: 32,427 (tie) )

Downloads per author, site-wide

Preprints

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 11,264 times
  • Download rankings, all-time:
    • Site-wide: 683
    • In bioinformatics: 29
  • Year to date:
    • Site-wide: 9,534
  • Since beginning of last month:
    • Site-wide: 8,757

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 9,053 times
  • Download rankings, all-time:
    • Site-wide: 911
    • In genomics: 73
  • Year to date:
    • Site-wide: 13,627
  • Since beginning of last month:
    • Site-wide: 19,339

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 7,368 times
  • Download rankings, all-time:
    • Site-wide: 1,188
    • In genomics: 111
  • Year to date:
    • Site-wide: 9,750
  • Since beginning of last month:
    • Site-wide: 6,205

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,709 times
  • Download rankings, all-time:
    • Site-wide: 2,171
    • In genomics: 231
  • Year to date:
    • Site-wide: 26,303
  • Since beginning of last month:
    • Site-wide: 28,081

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 3,869 times
  • Download rankings, all-time:
    • Site-wide: 2,866
    • In genomics: 325
  • Year to date:
    • Site-wide: 11,363
  • Since beginning of last month:
    • Site-wide: 16,020

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,619 times
  • Download rankings, all-time:
    • Site-wide: 5,011
    • In bioinformatics: 542
  • Year to date:
    • Site-wide: 50,266
  • Since beginning of last month:
    • Site-wide: 37,155

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,459 times
  • Download rankings, all-time:
    • Site-wide: 5,525
    • In cancer biology: 85
  • Year to date:
    • Site-wide: 32,530
  • Since beginning of last month:
    • Site-wide: 25,782

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,409 times
  • Download rankings, all-time:
    • Site-wide: 5,682
    • In genomics: 647
  • Year to date:
    • Site-wide: 95,456
  • Since beginning of last month:
    • Site-wide: 89,254

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,990 times
  • Download rankings, all-time:
    • Site-wide: 7,518
    • In bioinformatics: 906
  • Year to date:
    • Site-wide: 54,764
  • Since beginning of last month:
    • Site-wide: 52,871

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,922 times
  • Download rankings, all-time:
    • Site-wide: 7,927
    • In genomics: 866
  • Year to date:
    • Site-wide: 97,579
  • Since beginning of last month:
    • Site-wide: 87,418

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 1,886 times
  • Download rankings, all-time:
    • Site-wide: 8,154
    • In genomics: 890
  • Year to date:
    • Site-wide: 47,851
  • Since beginning of last month:
    • Site-wide: 43,467

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,560 times
  • Download rankings, all-time:
    • Site-wide: 10,825
    • In genomics: 1,175
  • Year to date:
    • Site-wide: 33,823
  • Since beginning of last month:
    • Site-wide: 23,944

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 1,142 times
  • Download rankings, all-time:
    • Site-wide: 17,253
    • In bioinformatics: 2,084
  • Year to date:
    • Site-wide: 64,845
  • Since beginning of last month:
    • Site-wide: 52,562

GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis

bioinformatics more details view paper
  • Downloaded 1,098 times
  • Download rankings, all-time:
    • Site-wide: 18,283
    • In bioinformatics: 2,194
  • Year to date:
    • Site-wide: 43,147
  • Since beginning of last month:
    • Site-wide: 41,677

Detection of the Novel SARS-CoV-2 European Lineage B.1.177 in Ontario, Canada

infectious diseases more details view paper
  • Downloaded 362 times
  • Download rankings, all-time:
    • Site-wide: 73,245
    • In infectious diseases: 3,178
  • Year to date:
    • Site-wide: 15,843
  • Since beginning of last month:
    • Site-wide: 22,891

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