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Author: Tobias Marschall

  • ORCiD: http://orcid.org/0000-0002-9376-1030
  • Most recently observed institution: Heinrich-Heine-University Dusseldorf, Medical Faculty, Institute of Medical Biometry and Bioinformatics, 40225 Dusseldorf, Germany

Rankings

  • All-time downloads: 76,963 (rank: 1,761 )
  • Categories:
    • bioinformatics: 37,833 (rank: 74 )
    • genetics: 1,275 (rank: 12,892 (tie) )
    • genomics: 37,855 (rank: 213 )

Downloads per author, site-wide

Preprints

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 12,841 times
  • Download rankings, all-time:
    • Site-wide: 536
    • In genomics: 37
  • Year to date:
    • Site-wide: 3,547
  • Since beginning of last month:
    • Site-wide: 3,291

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 8,533 times
  • Download rankings, all-time:
    • Site-wide: 930
    • In bioinformatics: 54
  • Year to date:
    • Site-wide: 6,914
  • Since beginning of last month:
    • Site-wide: 9,689

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 8,336 times
  • Download rankings, all-time:
    • Site-wide: 953
    • In genomics: 84
  • Year to date:
    • Site-wide: 46,918
  • Since beginning of last month:
    • Site-wide: None

WhatsHap: fast and accurate read-based phasing

bioinformatics more details view paper
  • Downloaded 7,842 times
  • Download rankings, all-time:
    • Site-wide: 1,028
    • In bioinformatics: 62
  • Year to date:
    • Site-wide: 1,865
  • Since beginning of last month:
    • Site-wide: 2,007

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 5,670 times
  • Download rankings, all-time:
    • Site-wide: 1,582
    • In genomics: 150
  • Year to date:
    • Site-wide: 4,767
  • Since beginning of last month:
    • Site-wide: 4,660

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,605 times
  • Download rankings, all-time:
    • Site-wide: 2,095
    • In genomics: 227
  • Year to date:
    • Site-wide: 18,732
  • Since beginning of last month:
    • Site-wide: 30,021

Accurate chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
  • Downloaded 3,780 times
  • Download rankings, all-time:
    • Site-wide: 2,771
    • In bioinformatics: 269
  • Year to date:
    • Site-wide: 5,017
  • Since beginning of last month:
    • Site-wide: 8,132

Haplotype-aware genotyping from noisy long reads

bioinformatics more details view paper
  • Downloaded 2,786 times
  • Download rankings, all-time:
    • Site-wide: 4,287
    • In bioinformatics: 465
  • Year to date:
    • Site-wide: 44,750
  • Since beginning of last month:
    • Site-wide: 44,893

Mapping And Phasing Of Structural Variation In Patient Genomes Using Nanopore Sequencing

genomics more details view paper
  • Downloaded 2,471 times
  • Download rankings, all-time:
    • Site-wide: 5,138
    • In genomics: 605
  • Year to date:
    • Site-wide: 112,794
  • Since beginning of last month:
    • Site-wide: None

A fully phased accurate assembly of an individual human genome

bioinformatics more details view paper
  • Downloaded 2,430 times
  • Download rankings, all-time:
    • Site-wide: 5,270
    • In bioinformatics: 600
  • Year to date:
    • Site-wide: 15,639
  • Since beginning of last month:
    • Site-wide: 24,135

GraphAligner: Rapid and Versatile Sequence-to-Graph Alignment

bioinformatics more details view paper
  • Downloaded 1,730 times
  • Download rankings, all-time:
    • Site-wide: 8,697
    • In bioinformatics: 1,068
  • Year to date:
    • Site-wide: 26,856
  • Since beginning of last month:
    • Site-wide: 24,767

Benchmarking challenging small variants with linked and long reads

genomics more details view paper
  • Downloaded 1,384 times
  • Download rankings, all-time:
    • Site-wide: 12,132
    • In genomics: 1,340
  • Year to date:
    • Site-wide: 3,201
  • Since beginning of last month:
    • Site-wide: 2,687

A high-quality reference panel reveals the complexity and distribution of structural genome changes in a human population

genetics more details view paper
  • Downloaded 1,275 times
  • Download rankings, all-time:
    • Site-wide: 13,707
    • In genetics: 697
  • Year to date:
    • Site-wide: 64,441
  • Since beginning of last month:
    • Site-wide: 64,293

Haplotype Threading: Accurate Polyploid Phasing from Long Reads

bioinformatics more details view paper
  • Downloaded 1,254 times
  • Download rankings, all-time:
    • Site-wide: 14,064
    • In bioinformatics: 1,736
  • Year to date:
    • Site-wide: 29,595
  • Since beginning of last month:
    • Site-wide: 41,168

Detecting Horizontal Gene Transfer by Mapping Sequencing Reads Across Species Boundaries

bioinformatics more details view paper
  • Downloaded 1,135 times
  • Download rankings, all-time:
    • Site-wide: 16,367
    • In bioinformatics: 2,010
  • Year to date:
    • Site-wide: 94,022
  • Since beginning of last month:
    • Site-wide: 83,642

Bit-parallel sequence-to-graph alignment

bioinformatics more details view paper
  • Downloaded 983 times
  • Download rankings, all-time:
    • Site-wide: 20,217
    • In bioinformatics: 2,440
  • Year to date:
    • Site-wide: 73,654
  • Since beginning of last month:
    • Site-wide: 38,347

Dense And Accurate Whole-Chromosome Haplotyping Of Individual Genomes

bioinformatics more details view paper
  • Downloaded 980 times
  • Download rankings, all-time:
    • Site-wide: 20,313
    • In bioinformatics: 2,445
  • Year to date:
    • Site-wide: 65,628
  • Since beginning of last month:
    • Site-wide: 83,846

Aligning sequences to general graphs in O(V + mE) time

bioinformatics more details view paper
  • Downloaded 963 times
  • Download rankings, all-time:
    • Site-wide: 20,807
    • In bioinformatics: 2,504
  • Year to date:
    • Site-wide: 58,297
  • Since beginning of last month:
    • Site-wide: 50,507

Pangenome-based genome inference

bioinformatics more details view paper
  • Downloaded 934 times
  • Download rankings, all-time:
    • Site-wide: 21,767
    • In bioinformatics: 2,608
  • Year to date:
    • Site-wide: 5,529
  • Since beginning of last month:
    • Site-wide: 5,549

A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex

genomics more details view paper
  • Downloaded 867 times
  • Download rankings, all-time:
    • Site-wide: 24,240
    • In genomics: 2,347
  • Year to date:
    • Site-wide: 53,722
  • Since beginning of last month:
    • Site-wide: 39,132

Read-Based Phasing of Related Individuals

bioinformatics more details view paper
  • Downloaded 846 times
  • Download rankings, all-time:
    • Site-wide: 25,093
    • In bioinformatics: 2,979
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

AERON: Transcript quantification and gene-fusion detection using long reads

bioinformatics more details view paper
  • Downloaded 831 times
  • Download rankings, all-time:
    • Site-wide: 25,727
    • In bioinformatics: 3,039
  • Year to date:
    • Site-wide: 22,539
  • Since beginning of last month:
    • Site-wide: 26,968

Expectations and blind spots for structural variation detection from short-read alignment and long-read assembly

genomics more details view paper
  • Downloaded 727 times
  • Download rankings, all-time:
    • Site-wide: 31,001
    • In genomics: 2,812
  • Year to date:
    • Site-wide: 14,360
  • Since beginning of last month:
    • Site-wide: 16,775

Enhancing sensitivity and controlling false discovery rate in somatic indel discovery

bioinformatics more details view paper
  • Downloaded 608 times
  • Download rankings, all-time:
    • Site-wide: 39,220
    • In bioinformatics: 4,313
  • Year to date:
    • Site-wide: 80,334
  • Since beginning of last month:
    • Site-wide: 62,618

Genotyping of Inversions and Tandem Duplications

bioinformatics more details view paper
  • Downloaded 569 times
  • Download rankings, all-time:
    • Site-wide: 42,629
    • In bioinformatics: 4,585
  • Year to date:
    • Site-wide: 107,080
  • Since beginning of last month:
    • Site-wide: 77,465

Single cell tri-channel-processing reveals structural variation landscapes and complex rearrangement processes

genomics more details view paper
  • Downloaded 505 times
  • Download rankings, all-time:
    • Site-wide: 49,188
    • In genomics: 3,914
  • Year to date:
    • Site-wide: 90,665
  • Since beginning of last month:
    • Site-wide: 98,277

Selecting Reads for Haplotype Assembly

bioinformatics more details view paper
  • Downloaded 481 times
  • Download rankings, all-time:
    • Site-wide: 52,132
    • In bioinformatics: 5,374
  • Year to date:
    • Site-wide: 121,285
  • Since beginning of last month:
    • Site-wide: 102,975

Enhancing Sensitivity And Controlling False Discovery Rate In Somatic Indel Discovery Using A Latent Variable Model

bioinformatics more details view paper
  • Downloaded 462 times
  • Download rankings, all-time:
    • Site-wide: 54,457
    • In bioinformatics: 5,579
  • Year to date:
    • Site-wide: 119,246
  • Since beginning of last month:
    • Site-wide: 98,069

A multi-platform reference for somatic structural variation detection

genomics more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 56,166
    • In genomics: 4,267
  • Year to date:
    • Site-wide: 10,325
  • Since beginning of last month:
    • Site-wide: 17,236

MBG: Minimizer-based Sparse de Bruijn Graph Construction

bioinformatics more details view paper
  • Downloaded 355 times
  • Download rankings, all-time:
    • Site-wide: 70,498
    • In bioinformatics: 6,702
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Fully-sensitive Seed Finding in Sequence Graphs Using a Hybrid Index

bioinformatics more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 74,802
    • In bioinformatics: 6,983
  • Year to date:
    • Site-wide: 106,610
  • Since beginning of last month:
    • Site-wide: 74,611

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