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Author: Tobias Marschall

  • ORCiD: http://orcid.org/0000-0002-9376-1030
  • Most recently observed institution: Institute for Medical Biometry and Bioinformatics, Medical Faculty, Heinrich Heine University Düsseldorf

Rankings

  • All-time downloads: 67,768 (rank: 580 out of 423,771)
  • Categories:
    • bioinformatics: 32,788 (rank: 75 out of 35,889)
    • genetics: 1,206 (rank: 11,867 (tie) out of 37,726)
    • genomics: 33,774 (rank: 226 out of 44,222)

Downloads per author, site-wide

Preprints

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 12,057 times
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    • Site-wide: 190 out of 100,306
    • In genomics: 34 out of 6,221
  • Year to date:
    • Site-wide: 1,009 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 8,204 times
  • Download rankings, all-time:
    • Site-wide: 365 out of 100,306
    • In genomics: 72 out of 6,221
  • Year to date:
    • Site-wide: 21,146 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 7,908 times
  • Download rankings, all-time:
    • Site-wide: 391 out of 100,306
    • In bioinformatics: 50 out of 9,217
  • Year to date:
    • Site-wide: 538 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

WhatsHap: fast and accurate read-based phasing

bioinformatics more details view paper
  • Downloaded 6,998 times
  • Download rankings, all-time:
    • Site-wide: 463 out of 100,306
    • In bioinformatics: 64 out of 9,217
  • Year to date:
    • Site-wide: 828 out of 100,306
  • Since beginning of last month:
    • Site-wide: 605 out of 100,306

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 5,021 times
  • Download rankings, all-time:
    • Site-wide: 817 out of 100,306
    • In genomics: 164 out of 6,221
  • Year to date:
    • Site-wide: 765 out of 100,306
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    • Site-wide: None out of 100,306

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,379 times
  • Download rankings, all-time:
    • Site-wide: 1,043 out of 100,306
    • In genomics: 213 out of 6,221
  • Year to date:
    • Site-wide: 17,371 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

Accurate chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
  • Downloaded 2,906 times
  • Download rankings, all-time:
    • Site-wide: 2,117 out of 100,306
    • In bioinformatics: 373 out of 9,217
  • Year to date:
    • Site-wide: 1,459 out of 100,306
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    • Site-wide: None out of 100,306

Haplotype-aware genotyping from noisy long reads

bioinformatics more details view paper
  • Downloaded 2,714 times
  • Download rankings, all-time:
    • Site-wide: 2,379 out of 100,306
    • In bioinformatics: 420 out of 9,217
  • Year to date:
    • Site-wide: 21,970 out of 100,306
  • Since beginning of last month:
    • Site-wide: 7,658 out of 100,306

Mapping And Phasing Of Structural Variation In Patient Genomes Using Nanopore Sequencing

genomics more details view paper
  • Downloaded 2,425 times
  • Download rankings, all-time:
    • Site-wide: 2,887 out of 100,306
    • In genomics: 532 out of 6,221
  • Year to date:
    • Site-wide: 63,277 out of 100,306
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    • Site-wide: None out of 100,306

A fully phased accurate assembly of an individual human genome

bioinformatics more details view paper
  • Downloaded 1,932 times
  • Download rankings, all-time:
    • Site-wide: 4,170 out of 100,306
    • In bioinformatics: 748 out of 9,217
  • Year to date:
    • Site-wide: 2,190 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

GraphAligner: Rapid and Versatile Sequence-to-Graph Alignment

bioinformatics more details view paper
  • Downloaded 1,415 times
  • Download rankings, all-time:
    • Site-wide: 7,036 out of 100,306
    • In bioinformatics: 1,226 out of 9,217
  • Year to date:
    • Site-wide: 4,592 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

A high-quality reference panel reveals the complexity and distribution of structural genome changes in a human population

genetics more details view paper
  • Downloaded 1,206 times
  • Download rankings, all-time:
    • Site-wide: 9,206 out of 100,306
    • In genetics: 632 out of 4,997
  • Year to date:
    • Site-wide: 68,442 out of 100,306
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    • Site-wide: None out of 100,306

Detecting Horizontal Gene Transfer by Mapping Sequencing Reads Across Species Boundaries

bioinformatics more details view paper
  • Downloaded 1,093 times
  • Download rankings, all-time:
    • Site-wide: 10,811 out of 100,306
    • In bioinformatics: 1,769 out of 9,217
  • Year to date:
    • Site-wide: 81,411 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

Haplotype Threading: Accurate Polyploid Phasing from Long Reads

bioinformatics more details view paper
  • Downloaded 953 times
  • Download rankings, all-time:
    • Site-wide: 13,451 out of 100,306
    • In bioinformatics: 2,117 out of 9,217
  • Year to date:
    • Site-wide: 2,239 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

Bit-parallel sequence-to-graph alignment

bioinformatics more details view paper
  • Downloaded 940 times
  • Download rankings, all-time:
    • Site-wide: 13,769 out of 100,306
    • In bioinformatics: 2,156 out of 9,217
  • Year to date:
    • Site-wide: 57,731 out of 100,306
  • Since beginning of last month:
    • Site-wide: 8,907 out of 100,306

Dense And Accurate Whole-Chromosome Haplotyping Of Individual Genomes

bioinformatics more details view paper
  • Downloaded 931 times
  • Download rankings, all-time:
    • Site-wide: 14,012 out of 100,306
    • In bioinformatics: 2,187 out of 9,217
  • Year to date:
    • Site-wide: 82,936 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

Aligning sequences to general graphs in O(V + mE) time

bioinformatics more details view paper
  • Downloaded 920 times
  • Download rankings, all-time:
    • Site-wide: 14,270 out of 100,306
    • In bioinformatics: 2,223 out of 9,217
  • Year to date:
    • Site-wide: 52,012 out of 100,306
  • Since beginning of last month:
    • Site-wide: 10,776 out of 100,306

Read-Based Phasing of Related Individuals

bioinformatics more details view paper
  • Downloaded 825 times
  • Download rankings, all-time:
    • Site-wide: 16,887 out of 100,306
    • In bioinformatics: 2,561 out of 9,217
  • Year to date:
    • Site-wide: 94,248 out of 100,306
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    • Site-wide: None out of 100,306

A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex

genomics more details view paper
  • Downloaded 757 times
  • Download rankings, all-time:
    • Site-wide: 19,275 out of 100,306
    • In genomics: 2,299 out of 6,221
  • Year to date:
    • Site-wide: 8,201 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

AERON: Transcript quantification and gene-fusion detection using long reads

bioinformatics more details view paper
  • Downloaded 686 times
  • Download rankings, all-time:
    • Site-wide: 22,287 out of 100,306
    • In bioinformatics: 3,178 out of 9,217
  • Year to date:
    • Site-wide: 3,670 out of 100,306
  • Since beginning of last month:
    • Site-wide: 5,218 out of 100,306

Enhancing sensitivity and controlling false discovery rate in somatic indel discovery

bioinformatics more details view paper
  • Downloaded 569 times
  • Download rankings, all-time:
    • Site-wide: 28,925 out of 100,306
    • In bioinformatics: 3,873 out of 9,217
  • Year to date:
    • Site-wide: 32,760 out of 100,306
  • Since beginning of last month:
    • Site-wide: 10,627 out of 100,306

Genotyping of Inversions and Tandem Duplications

bioinformatics more details view paper
  • Downloaded 541 times
  • Download rankings, all-time:
    • Site-wide: 30,838 out of 100,306
    • In bioinformatics: 4,066 out of 9,217
  • Year to date:
    • Site-wide: 93,081 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

Single cell tri-channel-processing reveals structural variation landscapes and complex rearrangement processes

genomics more details view paper
  • Downloaded 454 times
  • Download rankings, all-time:
    • Site-wide: 38,202 out of 100,306
    • In genomics: 3,601 out of 6,221
  • Year to date:
    • Site-wide: 31,597 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

Selecting Reads for Haplotype Assembly

bioinformatics more details view paper
  • Downloaded 451 times
  • Download rankings, all-time:
    • Site-wide: 38,520 out of 100,306
    • In bioinformatics: 4,774 out of 9,217
  • Year to date:
    • Site-wide: 93,105 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

Enhancing Sensitivity And Controlling False Discovery Rate In Somatic Indel Discovery Using A Latent Variable Model

bioinformatics more details view paper
  • Downloaded 450 times
  • Download rankings, all-time:
    • Site-wide: 38,701 out of 100,306
    • In bioinformatics: 4,790 out of 9,217
  • Year to date:
    • Site-wide: 82,067 out of 100,306
  • Since beginning of last month:
    • Site-wide: 15,793 out of 100,306

Expectations and blind spots for structural variation detection from short-read alignment and long-read assembly

genomics more details view paper
  • Downloaded 431 times
  • Download rankings, all-time:
    • Site-wide: 40,539 out of 100,306
    • In genomics: 3,747 out of 6,221
  • Year to date:
    • Site-wide: 7,526 out of 100,306
  • Since beginning of last month:
    • Site-wide: None out of 100,306

Fully-sensitive Seed Finding in Sequence Graphs Using a Hybrid Index

bioinformatics more details view paper
  • Downloaded 311 times
  • Download rankings, all-time:
    • Site-wide: 55,976 out of 100,306
    • In bioinformatics: 6,255 out of 9,217
  • Year to date:
    • Site-wide: 85,115 out of 100,306
  • Since beginning of last month:
    • Site-wide: 15,196 out of 100,306

MBG: Minimizer-based Sparse de Bruijn Graph Construction

bioinformatics more details view paper
  • Downloaded 245 times
  • Download rankings, all-time:
    • Site-wide: 66,689 out of 100,306
    • In bioinformatics: 7,007 out of 9,217
  • Year to date:
    • Site-wide: 17,553 out of 100,306
  • Since beginning of last month:
    • Site-wide: 716 out of 100,306

A multi-platform reference for somatic structural variation detection

genomics more details view paper
  • Downloaded 46 times
  • Download rankings, all-time:
    • Site-wide: 95,947 out of 100,306
    • In genomics: 6,049 out of 6,221
  • Year to date:
    • Site-wide: 91,990 out of 100,306
  • Since beginning of last month:
    • Site-wide: 6,015 out of 100,306

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