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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,240 bioRxiv papers from 267,843 authors.

Author: Tobias Marschall

Rankings

  • All-time downloads: 42,949 (rank: 323 out of 268,131)
  • Categories:
    • bioinformatics: 16,223 (rank: 104 out of 23,906)
    • genetics: 1,114 (rank: 8,828 (tie) out of 27,088)
    • genomics: 25,612 (rank: 213 out of 31,268)

Downloads per author, site-wide

Preprints

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 9,284 times
  • Download rankings, all-time:
    • Site-wide: 118 out of 60,323
    • In genomics: 39 out of 4,185
  • Year to date:
    • Site-wide: 16 out of 60,323
  • Since beginning of last month:
    • Site-wide: 82 out of 60,323

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 7,872 times
  • Download rankings, all-time:
    • Site-wide: 166 out of 60,323
    • In genomics: 50 out of 4,185
  • Year to date:
    • Site-wide: 512 out of 60,323
  • Since beginning of last month:
    • Site-wide: 5,239 out of 60,323

WhatsHap: fast and accurate read-based phasing

bioinformatics more details view paper
  • Downloaded 4,625 times
  • Download rankings, all-time:
    • Site-wide: 445 out of 60,323
    • In bioinformatics: 89 out of 6,082
  • Year to date:
    • Site-wide: 546 out of 60,323
  • Since beginning of last month:
    • Site-wide: 992 out of 60,323

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,044 times
  • Download rankings, all-time:
    • Site-wide: 592 out of 60,323
    • In genomics: 158 out of 4,185
  • Year to date:
    • Site-wide: 9,356 out of 60,323
  • Since beginning of last month:
    • Site-wide: 9,475 out of 60,323

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 3,245 times
  • Download rankings, all-time:
    • Site-wide: 898 out of 60,323
    • In bioinformatics: 179 out of 6,082
  • Year to date:
    • Site-wide: 133 out of 60,323
  • Since beginning of last month:
    • Site-wide: 16 out of 60,323

Haplotype-aware genotyping from noisy long reads

bioinformatics more details view paper
  • Downloaded 2,350 times
  • Download rankings, all-time:
    • Site-wide: 1,622 out of 60,323
    • In bioinformatics: 322 out of 6,082
  • Year to date:
    • Site-wide: 1,779 out of 60,323
  • Since beginning of last month:
    • Site-wide: 5,853 out of 60,323

Mapping And Phasing Of Structural Variation In Patient Genomes Using Nanopore Sequencing

genomics more details view paper
  • Downloaded 2,309 times
  • Download rankings, all-time:
    • Site-wide: 1,671 out of 60,323
    • In genomics: 374 out of 4,185
  • Year to date:
    • Site-wide: 34,454 out of 60,323
  • Since beginning of last month:
    • Site-wide: 33,549 out of 60,323

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 2,103 times
  • Download rankings, all-time:
    • Site-wide: 1,958 out of 60,323
    • In genomics: 433 out of 4,185
  • Year to date:
    • Site-wide: 307 out of 60,323
  • Since beginning of last month:
    • Site-wide: 287 out of 60,323

A high-quality reference panel reveals the complexity and distribution of structural genome changes in a human population

genetics more details view paper
  • Downloaded 1,114 times
  • Download rankings, all-time:
    • Site-wide: 5,737 out of 60,323
    • In genetics: 466 out of 3,443
  • Year to date:
    • Site-wide: 38,910 out of 60,323
  • Since beginning of last month:
    • Site-wide: 36,368 out of 60,323

Detecting Horizontal Gene Transfer by Mapping Sequencing Reads Across Species Boundaries

bioinformatics more details view paper
  • Downloaded 1,014 times
  • Download rankings, all-time:
    • Site-wide: 6,699 out of 60,323
    • In bioinformatics: 1,224 out of 6,082
  • Year to date:
    • Site-wide: 53,082 out of 60,323
  • Since beginning of last month:
    • Site-wide: 46,410 out of 60,323

Dense And Accurate Whole-Chromosome Haplotyping Of Individual Genomes

bioinformatics more details view paper
  • Downloaded 848 times
  • Download rankings, all-time:
    • Site-wide: 8,867 out of 60,323
    • In bioinformatics: 1,555 out of 6,082
  • Year to date:
    • Site-wide: 50,500 out of 60,323
  • Since beginning of last month:
    • Site-wide: 46,351 out of 60,323

Bit-parallel sequence-to-graph alignment

bioinformatics more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 9,376 out of 60,323
    • In bioinformatics: 1,645 out of 6,082
  • Year to date:
    • Site-wide: 11,007 out of 60,323
  • Since beginning of last month:
    • Site-wide: 16,604 out of 60,323

Aligning sequences to general graphs in O(V + mE) time

bioinformatics more details view paper
  • Downloaded 776 times
  • Download rankings, all-time:
    • Site-wide: 10,144 out of 60,323
    • In bioinformatics: 1,757 out of 6,082
  • Year to date:
    • Site-wide: 24,605 out of 60,323
  • Since beginning of last month:
    • Site-wide: 36,931 out of 60,323

Read-Based Phasing of Related Individuals

bioinformatics more details view paper
  • Downloaded 759 times
  • Download rankings, all-time:
    • Site-wide: 10,470 out of 60,323
    • In bioinformatics: 1,803 out of 6,082
  • Year to date:
    • Site-wide: 53,002 out of 60,323
  • Since beginning of last month:
    • Site-wide: 52,087 out of 60,323

Genotyping of Inversions and Tandem Duplications

bioinformatics more details view paper
  • Downloaded 478 times
  • Download rankings, all-time:
    • Site-wide: 19,497 out of 60,323
    • In bioinformatics: 2,893 out of 6,082
  • Year to date:
    • Site-wide: 56,717 out of 60,323
  • Since beginning of last month:
    • Site-wide: 57,550 out of 60,323

Selecting Reads for Haplotype Assembly

bioinformatics more details view paper
  • Downloaded 388 times
  • Download rankings, all-time:
    • Site-wide: 24,711 out of 60,323
    • In bioinformatics: 3,429 out of 6,082
  • Year to date:
    • Site-wide: 52,463 out of 60,323
  • Since beginning of last month:
    • Site-wide: 57,026 out of 60,323

Enhancing Sensitivity And Controlling False Discovery Rate In Somatic Indel Discovery Using A Latent Variable Model

bioinformatics more details view paper
  • Downloaded 376 times
  • Download rankings, all-time:
    • Site-wide: 25,494 out of 60,323
    • In bioinformatics: 3,508 out of 6,082
  • Year to date:
    • Site-wide: 49,941 out of 60,323
  • Since beginning of last month:
    • Site-wide: 25,205 out of 60,323

Enhancing sensitivity and controlling false discovery rate in somatic indel discovery

bioinformatics more details view paper
  • Downloaded 319 times
  • Download rankings, all-time:
    • Site-wide: 29,974 out of 60,323
    • In bioinformatics: 3,910 out of 6,082
  • Year to date:
    • Site-wide: 9,127 out of 60,323
  • Since beginning of last month:
    • Site-wide: 562 out of 60,323

Fully-sensitive Seed Finding in Sequence Graphs Using a Hybrid Index

bioinformatics more details view paper
  • Downloaded 227 times
  • Download rankings, all-time:
    • Site-wide: 39,101 out of 60,323
    • In bioinformatics: 4,675 out of 6,082
  • Year to date:
    • Site-wide: 15,103 out of 60,323
  • Since beginning of last month:
    • Site-wide: 17,219 out of 60,323

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