Author: Tobias Marschall
- ORCiD: http://orcid.org/0000-0002-9376-1030
- Most recently observed institution: Heinrich-Heine-University Dusseldorf, Medical Faculty, Institute of Medical Biometry and Bioinformatics, 40225 Dusseldorf, Germany
Rankings
- All-time downloads: 76,963 (rank: 1,761 )
- Categories:
- bioinformatics: 37,833 (rank: 74 )
- genetics: 1,275 (rank: 12,892 (tie) )
- genomics: 37,855 (rank: 213 )
Downloads per author, site-wide
Preprints
Highly-accurate long-read sequencing improves variant detection and assembly of a human genome
genomics more details view paper- Downloaded 12,841 times
- Download rankings, all-time:
- Site-wide: 536
- In genomics: 37
- Year to date:
- Site-wide: 3,547
- Since beginning of last month:
- Site-wide: 3,291
Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit
bioinformatics more details view paper- Downloaded 8,533 times
- Download rankings, all-time:
- Site-wide: 930
- In bioinformatics: 54
- Year to date:
- Site-wide: 6,914
- Since beginning of last month:
- Site-wide: 9,689
Multi-platform discovery of haplotype-resolved structural variation in human genomes
genomics more details view paper- Downloaded 8,336 times
- Download rankings, all-time:
- Site-wide: 953
- In genomics: 84
- Year to date:
- Site-wide: 46,918
- Since beginning of last month:
- Site-wide: None
WhatsHap: fast and accurate read-based phasing
bioinformatics more details view paper- Downloaded 7,842 times
- Download rankings, all-time:
- Site-wide: 1,028
- In bioinformatics: 62
- Year to date:
- Site-wide: 1,865
- Since beginning of last month:
- Site-wide: 2,007
A robust benchmark for germline structural variant detection
genomics more details view paper- Downloaded 5,670 times
- Download rankings, all-time:
- Site-wide: 1,582
- In genomics: 150
- Year to date:
- Site-wide: 4,767
- Since beginning of last month:
- Site-wide: 4,660
Computational Pan-Genomics: Status, Promises and Challenges
genomics more details view paper- Downloaded 4,605 times
- Download rankings, all-time:
- Site-wide: 2,095
- In genomics: 227
- Year to date:
- Site-wide: 18,732
- Since beginning of last month:
- Site-wide: 30,021
Accurate chromosome-scale haplotype-resolved assembly of human genomes
bioinformatics more details view paper- Downloaded 3,780 times
- Download rankings, all-time:
- Site-wide: 2,771
- In bioinformatics: 269
- Year to date:
- Site-wide: 5,017
- Since beginning of last month:
- Site-wide: 8,132
Haplotype-aware genotyping from noisy long reads
bioinformatics more details view paper- Downloaded 2,786 times
- Download rankings, all-time:
- Site-wide: 4,287
- In bioinformatics: 465
- Year to date:
- Site-wide: 44,750
- Since beginning of last month:
- Site-wide: 44,893
Mapping And Phasing Of Structural Variation In Patient Genomes Using Nanopore Sequencing
genomics more details view paper- Downloaded 2,471 times
- Download rankings, all-time:
- Site-wide: 5,138
- In genomics: 605
- Year to date:
- Site-wide: 112,794
- Since beginning of last month:
- Site-wide: None
A fully phased accurate assembly of an individual human genome
bioinformatics more details view paper- Downloaded 2,430 times
- Download rankings, all-time:
- Site-wide: 5,270
- In bioinformatics: 600
- Year to date:
- Site-wide: 15,639
- Since beginning of last month:
- Site-wide: 24,135
GraphAligner: Rapid and Versatile Sequence-to-Graph Alignment
bioinformatics more details view paper- Downloaded 1,730 times
- Download rankings, all-time:
- Site-wide: 8,697
- In bioinformatics: 1,068
- Year to date:
- Site-wide: 26,856
- Since beginning of last month:
- Site-wide: 24,767
Benchmarking challenging small variants with linked and long reads
genomics more details view paper- Downloaded 1,384 times
- Download rankings, all-time:
- Site-wide: 12,132
- In genomics: 1,340
- Year to date:
- Site-wide: 3,201
- Since beginning of last month:
- Site-wide: 2,687
A high-quality reference panel reveals the complexity and distribution of structural genome changes in a human population
genetics more details view paper- Downloaded 1,275 times
- Download rankings, all-time:
- Site-wide: 13,707
- In genetics: 697
- Year to date:
- Site-wide: 64,441
- Since beginning of last month:
- Site-wide: 64,293
Haplotype Threading: Accurate Polyploid Phasing from Long Reads
bioinformatics more details view paper- Downloaded 1,254 times
- Download rankings, all-time:
- Site-wide: 14,064
- In bioinformatics: 1,736
- Year to date:
- Site-wide: 29,595
- Since beginning of last month:
- Site-wide: 41,168
Detecting Horizontal Gene Transfer by Mapping Sequencing Reads Across Species Boundaries
bioinformatics more details view paper- Downloaded 1,135 times
- Download rankings, all-time:
- Site-wide: 16,367
- In bioinformatics: 2,010
- Year to date:
- Site-wide: 94,022
- Since beginning of last month:
- Site-wide: 83,642
Bit-parallel sequence-to-graph alignment
bioinformatics more details view paper- Downloaded 983 times
- Download rankings, all-time:
- Site-wide: 20,217
- In bioinformatics: 2,440
- Year to date:
- Site-wide: 73,654
- Since beginning of last month:
- Site-wide: 38,347
Dense And Accurate Whole-Chromosome Haplotyping Of Individual Genomes
bioinformatics more details view paper- Downloaded 980 times
- Download rankings, all-time:
- Site-wide: 20,313
- In bioinformatics: 2,445
- Year to date:
- Site-wide: 65,628
- Since beginning of last month:
- Site-wide: 83,846
Aligning sequences to general graphs in O(V + mE) time
bioinformatics more details view paper- Downloaded 963 times
- Download rankings, all-time:
- Site-wide: 20,807
- In bioinformatics: 2,504
- Year to date:
- Site-wide: 58,297
- Since beginning of last month:
- Site-wide: 50,507
Pangenome-based genome inference
bioinformatics more details view paper- Downloaded 934 times
- Download rankings, all-time:
- Site-wide: 21,767
- In bioinformatics: 2,608
- Year to date:
- Site-wide: 5,529
- Since beginning of last month:
- Site-wide: 5,549
A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex
genomics more details view paper- Downloaded 867 times
- Download rankings, all-time:
- Site-wide: 24,240
- In genomics: 2,347
- Year to date:
- Site-wide: 53,722
- Since beginning of last month:
- Site-wide: 39,132
Read-Based Phasing of Related Individuals
bioinformatics more details view paper- Downloaded 846 times
- Download rankings, all-time:
- Site-wide: 25,093
- In bioinformatics: 2,979
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: None
AERON: Transcript quantification and gene-fusion detection using long reads
bioinformatics more details view paper- Downloaded 831 times
- Download rankings, all-time:
- Site-wide: 25,727
- In bioinformatics: 3,039
- Year to date:
- Site-wide: 22,539
- Since beginning of last month:
- Site-wide: 26,968
Expectations and blind spots for structural variation detection from short-read alignment and long-read assembly
genomics more details view paper- Downloaded 727 times
- Download rankings, all-time:
- Site-wide: 31,001
- In genomics: 2,812
- Year to date:
- Site-wide: 14,360
- Since beginning of last month:
- Site-wide: 16,775
Enhancing sensitivity and controlling false discovery rate in somatic indel discovery
bioinformatics more details view paper- Downloaded 608 times
- Download rankings, all-time:
- Site-wide: 39,220
- In bioinformatics: 4,313
- Year to date:
- Site-wide: 80,334
- Since beginning of last month:
- Site-wide: 62,618
Genotyping of Inversions and Tandem Duplications
bioinformatics more details view paper- Downloaded 569 times
- Download rankings, all-time:
- Site-wide: 42,629
- In bioinformatics: 4,585
- Year to date:
- Site-wide: 107,080
- Since beginning of last month:
- Site-wide: 77,465
Single cell tri-channel-processing reveals structural variation landscapes and complex rearrangement processes
genomics more details view paper- Downloaded 505 times
- Download rankings, all-time:
- Site-wide: 49,188
- In genomics: 3,914
- Year to date:
- Site-wide: 90,665
- Since beginning of last month:
- Site-wide: 98,277
Selecting Reads for Haplotype Assembly
bioinformatics more details view paper- Downloaded 481 times
- Download rankings, all-time:
- Site-wide: 52,132
- In bioinformatics: 5,374
- Year to date:
- Site-wide: 121,285
- Since beginning of last month:
- Site-wide: 102,975
Enhancing Sensitivity And Controlling False Discovery Rate In Somatic Indel Discovery Using A Latent Variable Model
bioinformatics more details view paper- Downloaded 462 times
- Download rankings, all-time:
- Site-wide: 54,457
- In bioinformatics: 5,579
- Year to date:
- Site-wide: 119,246
- Since beginning of last month:
- Site-wide: 98,069
A multi-platform reference for somatic structural variation detection
genomics more details view paper- Downloaded 449 times
- Download rankings, all-time:
- Site-wide: 56,166
- In genomics: 4,267
- Year to date:
- Site-wide: 10,325
- Since beginning of last month:
- Site-wide: 17,236
MBG: Minimizer-based Sparse de Bruijn Graph Construction
bioinformatics more details view paper- Downloaded 355 times
- Download rankings, all-time:
- Site-wide: 70,498
- In bioinformatics: 6,702
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: None
Fully-sensitive Seed Finding in Sequence Graphs Using a Hybrid Index
bioinformatics more details view paper- Downloaded 331 times
- Download rankings, all-time:
- Site-wide: 74,802
- In bioinformatics: 6,983
- Year to date:
- Site-wide: 106,610
- Since beginning of last month:
- Site-wide: 74,611
PanLingua
News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
- 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
- 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
- 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
- 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
- 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
- 22 Jan 2019: Nature just published an article about Rxivist and our data.
- 13 Jan 2019: The Rxivist preprint is live!