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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,143 bioRxiv papers from 295,399 authors.

Author: Tobias Marschall

Rankings

  • All-time downloads: 50,045 (rank: 288 out of 295,399)
  • Categories:
    • bioinformatics: 20,905 (rank: 83 out of 25,758)
    • genetics: 1,128 (rank: 9,677 (tie) out of 29,470)
    • genomics: 28,012 (rank: 210 out of 33,659)

Downloads per author, site-wide

Preprints

A fully phased accurate assembly of an individual human genome

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No bioRxiv download data for this paper yet.

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 10,156 times
  • Download rankings, all-time:
    • Site-wide: 111 out of 67,143
    • In genomics: 35 out of 4,561
  • Year to date:
    • Site-wide: 21 out of 67,143
  • Since beginning of last month:
    • Site-wide: 478 out of 67,143

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 7,961 times
  • Download rankings, all-time:
    • Site-wide: 186 out of 67,143
    • In genomics: 54 out of 4,561
  • Year to date:
    • Site-wide: 713 out of 67,143
  • Since beginning of last month:
    • Site-wide: 11,446 out of 67,143

WhatsHap: fast and accurate read-based phasing

bioinformatics more details view paper
  • Downloaded 5,007 times
  • Download rankings, all-time:
    • Site-wide: 431 out of 67,143
    • In bioinformatics: 83 out of 6,625
  • Year to date:
    • Site-wide: 547 out of 67,143
  • Since beginning of last month:
    • Site-wide: 1,057 out of 67,143

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 5,000 times
  • Download rankings, all-time:
    • Site-wide: 433 out of 67,143
    • In bioinformatics: 85 out of 6,625
  • Year to date:
    • Site-wide: 94 out of 67,143
  • Since beginning of last month:
    • Site-wide: 152 out of 67,143

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,100 times
  • Download rankings, all-time:
    • Site-wide: 654 out of 67,143
    • In genomics: 169 out of 4,561
  • Year to date:
    • Site-wide: 10,546 out of 67,143
  • Since beginning of last month:
    • Site-wide: 22,078 out of 67,143

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 2,957 times
  • Download rankings, all-time:
    • Site-wide: 1,213 out of 67,143
    • In genomics: 282 out of 4,561
  • Year to date:
    • Site-wide: 245 out of 67,143
  • Since beginning of last month:
    • Site-wide: 364 out of 67,143

Haplotype-aware genotyping from noisy long reads

bioinformatics more details view paper
  • Downloaded 2,448 times
  • Download rankings, all-time:
    • Site-wide: 1,697 out of 67,143
    • In bioinformatics: 339 out of 6,625
  • Year to date:
    • Site-wide: 2,171 out of 67,143
  • Since beginning of last month:
    • Site-wide: 8,122 out of 67,143

Mapping And Phasing Of Structural Variation In Patient Genomes Using Nanopore Sequencing

genomics more details view paper
  • Downloaded 2,335 times
  • Download rankings, all-time:
    • Site-wide: 1,864 out of 67,143
    • In genomics: 410 out of 4,561
  • Year to date:
    • Site-wide: 38,444 out of 67,143
  • Since beginning of last month:
    • Site-wide: 24,247 out of 67,143

Efficient chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
  • Downloaded 1,475 times
  • Download rankings, all-time:
    • Site-wide: 4,087 out of 67,143
    • In bioinformatics: 805 out of 6,625
  • Year to date:
    • Site-wide: 962 out of 67,143
  • Since beginning of last month:
    • Site-wide: 257 out of 67,143

A high-quality reference panel reveals the complexity and distribution of structural genome changes in a human population

genetics more details view paper
  • Downloaded 1,128 times
  • Download rankings, all-time:
    • Site-wide: 6,354 out of 67,143
    • In genetics: 501 out of 3,776
  • Year to date:
    • Site-wide: 46,340 out of 67,143
  • Since beginning of last month:
    • Site-wide: 55,039 out of 67,143

Detecting Horizontal Gene Transfer by Mapping Sequencing Reads Across Species Boundaries

bioinformatics more details view paper
  • Downloaded 1,030 times
  • Download rankings, all-time:
    • Site-wide: 7,356 out of 67,143
    • In bioinformatics: 1,313 out of 6,625
  • Year to date:
    • Site-wide: 59,377 out of 67,143
  • Since beginning of last month:
    • Site-wide: 56,926 out of 67,143

Dense And Accurate Whole-Chromosome Haplotyping Of Individual Genomes

bioinformatics more details view paper
  • Downloaded 868 times
  • Download rankings, all-time:
    • Site-wide: 9,691 out of 67,143
    • In bioinformatics: 1,679 out of 6,625
  • Year to date:
    • Site-wide: 55,270 out of 67,143
  • Since beginning of last month:
    • Site-wide: 48,644 out of 67,143

Bit-parallel sequence-to-graph alignment

bioinformatics more details view paper
  • Downloaded 839 times
  • Download rankings, all-time:
    • Site-wide: 10,208 out of 67,143
    • In bioinformatics: 1,750 out of 6,625
  • Year to date:
    • Site-wide: 14,331 out of 67,143
  • Since beginning of last month:
    • Site-wide: 52,708 out of 67,143

Aligning sequences to general graphs in O(V + mE) time

bioinformatics more details view paper
  • Downloaded 809 times
  • Download rankings, all-time:
    • Site-wide: 10,807 out of 67,143
    • In bioinformatics: 1,830 out of 6,625
  • Year to date:
    • Site-wide: 27,428 out of 67,143
  • Since beginning of last month:
    • Site-wide: 37,584 out of 67,143

Read-Based Phasing of Related Individuals

bioinformatics more details view paper
  • Downloaded 771 times
  • Download rankings, all-time:
    • Site-wide: 11,614 out of 67,143
    • In bioinformatics: 1,942 out of 6,625
  • Year to date:
    • Site-wide: 60,727 out of 67,143
  • Since beginning of last month:
    • Site-wide: 59,205 out of 67,143

GraphAligner: Rapid and Versatile Sequence-to-Graph Alignment

bioinformatics more details view paper
  • Downloaded 745 times
  • Download rankings, all-time:
    • Site-wide: 12,215 out of 67,143
    • In bioinformatics: 2,017 out of 6,625
  • Year to date:
    • Site-wide: 3,263 out of 67,143
  • Since beginning of last month:
    • Site-wide: 1,146 out of 67,143

Genotyping of Inversions and Tandem Duplications

bioinformatics more details view paper
  • Downloaded 493 times
  • Download rankings, all-time:
    • Site-wide: 21,422 out of 67,143
    • In bioinformatics: 3,099 out of 6,625
  • Year to date:
    • Site-wide: 62,856 out of 67,143
  • Since beginning of last month:
    • Site-wide: 57,199 out of 67,143

Selecting Reads for Haplotype Assembly

bioinformatics more details view paper
  • Downloaded 406 times
  • Download rankings, all-time:
    • Site-wide: 26,898 out of 67,143
    • In bioinformatics: 3,631 out of 6,625
  • Year to date:
    • Site-wide: 57,830 out of 67,143
  • Since beginning of last month:
    • Site-wide: 40,762 out of 67,143

Enhancing Sensitivity And Controlling False Discovery Rate In Somatic Indel Discovery Using A Latent Variable Model

bioinformatics more details view paper
  • Downloaded 388 times
  • Download rankings, all-time:
    • Site-wide: 28,181 out of 67,143
    • In bioinformatics: 3,751 out of 6,625
  • Year to date:
    • Site-wide: 57,847 out of 67,143
  • Since beginning of last month:
    • Site-wide: 61,329 out of 67,143

Enhancing sensitivity and controlling false discovery rate in somatic indel discovery

bioinformatics more details view paper
  • Downloaded 379 times
  • Download rankings, all-time:
    • Site-wide: 28,876 out of 67,143
    • In bioinformatics: 3,824 out of 6,625
  • Year to date:
    • Site-wide: 10,169 out of 67,143
  • Since beginning of last month:
    • Site-wide: 20,563 out of 67,143

A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex

genomics more details view paper
  • Downloaded 277 times
  • Download rankings, all-time:
    • Site-wide: 38,592 out of 67,143
    • In genomics: 3,448 out of 4,561
  • Year to date:
    • Site-wide: 16,385 out of 67,143
  • Since beginning of last month:
    • Site-wide: 517 out of 67,143

Fully-sensitive Seed Finding in Sequence Graphs Using a Hybrid Index

bioinformatics more details view paper
  • Downloaded 247 times
  • Download rankings, all-time:
    • Site-wide: 42,147 out of 67,143
    • In bioinformatics: 4,928 out of 6,625
  • Year to date:
    • Site-wide: 19,294 out of 67,143
  • Since beginning of last month:
    • Site-wide: 53,660 out of 67,143

Single cell tri-channel-processing reveals structural variation landscapes and complex rearrangement processes

genomics more details view paper
  • Downloaded 226 times
  • Download rankings, all-time:
    • Site-wide: 44,754 out of 67,143
    • In genomics: 3,765 out of 4,561
  • Year to date:
    • Site-wide: 21,613 out of 67,143
  • Since beginning of last month:
    • Site-wide: 730 out of 67,143

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