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Author: Paul Medvedev

Rankings

  • All-time downloads: 22,797 (rank: 2,693 (tie) out of 425,964)
  • Categories:
    • bioinformatics: 12,494 (rank: 429 out of 36,200)
    • evolutionary biology: 580 (rank: 9,739 (tie) out of 21,771)
    • genomics: 9,723 (rank: 1,639 out of 44,631)

Downloads per author, site-wide

Preprints

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
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    • In genomics: 216 out of 6,253
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    • Site-wide: 10,208 out of 100,845

Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
  • Downloaded 3,591 times
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    • In genomics: 317 out of 6,253
  • Year to date:
    • Site-wide: 409 out of 100,845
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    • Site-wide: 304 out of 100,845

AllSome Sequence Bloom Trees

bioinformatics more details view paper
  • Downloaded 1,858 times
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    • In bioinformatics: 857 out of 9,260
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    • Site-wide: 35,561 out of 100,845

De novo clustering of long-read transcriptome data using a greedy, quality-value based algorithm

bioinformatics more details view paper
  • Downloaded 1,763 times
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    • Site-wide: 5,207 out of 100,845
    • In bioinformatics: 925 out of 9,260
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Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ

bioinformatics more details view paper
  • Downloaded 1,412 times
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    • Site-wide: 7,557 out of 100,845
    • In bioinformatics: 1,285 out of 9,260
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    • Site-wide: 12,255 out of 100,845
  • Since beginning of last month:
    • Site-wide: 4,869 out of 100,845

Data structures based on k-mers for querying large collections of sequencing datasets

bioinformatics more details view paper
  • Downloaded 1,384 times
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    • In bioinformatics: 1,333 out of 9,260
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    • Site-wide: 8,036 out of 100,845

VarMatch: robust matching of small variant datasets using flexible scoring schemes

bioinformatics more details view paper
  • Downloaded 1,006 times
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    • In bioinformatics: 2,059 out of 9,260
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    • Site-wide: 78,365 out of 100,845

Representation of k-mer sets using spectrum-preserving string sets

bioinformatics more details view paper
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    • In bioinformatics: 2,064 out of 9,260
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    • Site-wide: 7,864 out of 100,845

Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis

bioinformatics more details view paper
  • Downloaded 993 times
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    • Site-wide: 13,535 out of 100,845
    • In bioinformatics: 2,103 out of 9,260
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    • Site-wide: 2,630 out of 100,845
  • Since beginning of last month:
    • Site-wide: 13,747 out of 100,845

Improving the Power of Structural Variation Detection by Augmenting the Reference

bioinformatics more details view paper
  • Downloaded 923 times
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    • Site-wide: 15,262 out of 100,845
    • In bioinformatics: 2,334 out of 9,260
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    • Site-wide: 97,314 out of 100,845
  • Since beginning of last month:
    • Site-wide: 83,710 out of 100,845

Correcting palindromes in long reads after whole-genome amplification

genomics more details view paper
  • Downloaded 844 times
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    • Site-wide: 17,512 out of 100,845
    • In genomics: 2,157 out of 6,253
  • Year to date:
    • Site-wide: 70,195 out of 100,845
  • Since beginning of last month:
    • Site-wide: 54,788 out of 100,845

Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics

bioinformatics more details view paper
  • Downloaded 836 times
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    • Site-wide: 17,765 out of 100,845
    • In bioinformatics: 2,649 out of 9,260
  • Year to date:
    • Site-wide: 55,977 out of 100,845
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    • Site-wide: 33,048 out of 100,845

IsoCon: Deciphering highly similar multigene family transcripts from Iso-Seq data

genomics more details view paper
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    • In genomics: 2,198 out of 6,253
  • Year to date:
    • Site-wide: 81,825 out of 100,845
  • Since beginning of last month:
    • Site-wide: 66,835 out of 100,845

RecoverY: K-mer based read classification for Y-chromosome specific sequencing and assembly

bioinformatics more details view paper
  • Downloaded 665 times
  • Download rankings, all-time:
    • Site-wide: 25,083 out of 100,845
    • In bioinformatics: 3,447 out of 9,260
  • Year to date:
    • Site-wide: 73,658 out of 100,845
  • Since beginning of last month:
    • Site-wide: 83,169 out of 100,845

Improved representation of sequence Bloom trees

bioinformatics more details view paper
  • Downloaded 649 times
  • Download rankings, all-time:
    • Site-wide: 25,882 out of 100,845
    • In bioinformatics: 3,536 out of 9,260
  • Year to date:
    • Site-wide: 41,510 out of 100,845
  • Since beginning of last month:
    • Site-wide: 54,681 out of 100,845

Dynamic evolution of great ape Y chromosomes

evolutionary biology more details view paper
  • Downloaded 580 times
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    • Site-wide: 30,089 out of 100,845
    • In evolutionary biology: 1,907 out of 6,019
  • Year to date:
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    • Site-wide: 19,420 out of 100,845

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  • 20 Oct 2020: Support for sorting preprints using Twitter activity has been removed, at least temporarily, until a new source of social media activity data becomes available.
  • 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
  • 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
  • 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
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