Rxivist logo

Author: Paul Medvedev

Rankings

  • All-time downloads: 24,865 (rank: 5,706 )
  • Categories:
    • bioinformatics: 13,725 (rank: 407 )
    • evolutionary biology: 618 (rank: 10,123 (tie) )
    • genomics: 10,522 (rank: 1,614 (tie) )

Downloads per author, site-wide

Preprints

The statistics of k-mers from a sequence undergoing a simple mutation process without spurious matches

bioinformatics more details view paper

No download data for this paper yet.

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,549 times
  • Download rankings, all-time:
    • Site-wide: 1,978
    • In genomics: 225
  • Year to date:
    • Site-wide: 23,036
  • Since beginning of last month:
    • Site-wide: 16,682

Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
  • Downloaded 4,254 times
  • Download rankings, all-time:
    • Site-wide: 2,173
    • In genomics: 257
  • Year to date:
    • Site-wide: 1,687
  • Since beginning of last month:
    • Site-wide: 2,530

De novo clustering of long-read transcriptome data using a greedy, quality-value based algorithm

bioinformatics more details view paper
  • Downloaded 1,923 times
  • Download rankings, all-time:
    • Site-wide: 6,943
    • In bioinformatics: 879
  • Year to date:
    • Site-wide: 6,438
  • Since beginning of last month:
    • Site-wide: 9,553

AllSome Sequence Bloom Trees

bioinformatics more details view paper
  • Downloaded 1,891 times
  • Download rankings, all-time:
    • Site-wide: 7,111
    • In bioinformatics: 904
  • Year to date:
    • Site-wide: 72,155
  • Since beginning of last month:
    • Site-wide: 80,653

Data structures based on k-mers for querying large collections of sequencing datasets

bioinformatics more details view paper
  • Downloaded 1,853 times
  • Download rankings, all-time:
    • Site-wide: 7,332
    • In bioinformatics: 935
  • Year to date:
    • Site-wide: 5,087
  • Since beginning of last month:
    • Site-wide: 1,077

Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ

bioinformatics more details view paper
  • Downloaded 1,555 times
  • Download rankings, all-time:
    • Site-wide: 9,571
    • In bioinformatics: 1,213
  • Year to date:
    • Site-wide: 20,768
  • Since beginning of last month:
    • Site-wide: 19,091

Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis

bioinformatics more details view paper
  • Downloaded 1,171 times
  • Download rankings, all-time:
    • Site-wide: 14,608
    • In bioinformatics: 1,828
  • Year to date:
    • Site-wide: 11,008
  • Since beginning of last month:
    • Site-wide: 12,131

Representation of k-mer sets using spectrum-preserving string sets

bioinformatics more details view paper
  • Downloaded 1,152 times
  • Download rankings, all-time:
    • Site-wide: 14,954
    • In bioinformatics: 1,876
  • Year to date:
    • Site-wide: 22,094
  • Since beginning of last month:
    • Site-wide: 12,618

VarMatch: robust matching of small variant datasets using flexible scoring schemes

bioinformatics more details view paper
  • Downloaded 1,017 times
  • Download rankings, all-time:
    • Site-wide: 18,087
    • In bioinformatics: 2,240
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Improving the Power of Structural Variation Detection by Augmenting the Reference

bioinformatics more details view paper
  • Downloaded 929 times
  • Download rankings, all-time:
    • Site-wide: 20,621
    • In bioinformatics: 2,534
  • Year to date:
    • Site-wide: 119,639
  • Since beginning of last month:
    • Site-wide: 116,450

Correcting palindromes in long reads after whole-genome amplification

genomics more details view paper
  • Downloaded 873 times
  • Download rankings, all-time:
    • Site-wide: 22,575
    • In genomics: 2,236
  • Year to date:
    • Site-wide: 92,329
  • Since beginning of last month:
    • Site-wide: 78,582

Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics

bioinformatics more details view paper
  • Downloaded 856 times
  • Download rankings, all-time:
    • Site-wide: 23,211
    • In bioinformatics: 2,826
  • Year to date:
    • Site-wide: 108,548
  • Since beginning of last month:
    • Site-wide: 102,929

IsoCon: Deciphering highly similar multigene family transcripts from Iso-Seq data

genomics more details view paper
  • Downloaded 846 times
  • Download rankings, all-time:
    • Site-wide: 23,616
    • In genomics: 2,321
  • Year to date:
    • Site-wide: 90,201
  • Since beginning of last month:
    • Site-wide: 119,416

RecoverY: K-mer based read classification for Y-chromosome specific sequencing and assembly

bioinformatics more details view paper
  • Downloaded 689 times
  • Download rankings, all-time:
    • Site-wide: 31,364
    • In bioinformatics: 3,610
  • Year to date:
    • Site-wide: 112,134
  • Since beginning of last month:
    • Site-wide: 98,720

Improved representation of sequence Bloom trees

bioinformatics more details view paper
  • Downloaded 689 times
  • Download rankings, all-time:
    • Site-wide: 31,347
    • In bioinformatics: 3,609
  • Year to date:
    • Site-wide: 52,190
  • Since beginning of last month:
    • Site-wide: 63,589

Dynamic evolution of great ape Y chromosomes

evolutionary biology more details view paper
  • Downloaded 618 times
  • Download rankings, all-time:
    • Site-wide: 36,264
    • In evolutionary biology: 1,914
  • Year to date:
    • Site-wide: 84,343
  • Since beginning of last month:
    • Site-wide: 59,424

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News