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Author: Alex K. Shalek

  • ORCiD: http://orcid.org/0000-0001-5670-8778
  • Most recently observed institution: The Ragon Institute; Massachusetts Institute of Technology; The Broad Institute; Harvard-MIT Program in Health Sciences and Technology

Rankings

  • All-time downloads: 36,536 (rank: 1,175 out of 404,161)
  • Categories:
    • bioengineering: 2,328 (rank: 594 out of 12,052)
    • cancer biology: 465 (rank: 12,752 (tie) out of 28,183)
    • genomics: 17,428 (rank: 533 out of 42,763)
    • immunology: 12,421 (rank: 313 (tie) out of 23,479)
    • microbiology: 2,047 (rank: 4,198 (tie) out of 46,811)
    • systems biology: 1,847 (rank: 1,681 out of 11,761)

Downloads per author, site-wide

Preprints

Transcriptional subtype-specific microenvironmental crosstalk and tumor cell plasticity in metastatic pancreatic cancer

cancer biology more details view paper

No bioRxiv download data for this paper yet.

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 12,140 times
  • Download rankings, all-time:
    • Site-wide: 186 out of 94,912
    • In genomics: 32 out of 5,955
  • Year to date:
    • Site-wide: 327 out of 94,912
  • Since beginning of last month:
    • Site-wide: 490 out of 94,912

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 4,232 times
  • Download rankings, all-time:
    • Site-wide: 1,102 out of 94,912
    • In genomics: 228 out of 5,955
  • Year to date:
    • Site-wide: None out of 94,912
  • Since beginning of last month:
    • Site-wide: None out of 94,912

Highly Efficient, Massively-Parallel Single-Cell RNA-Seq Reveals Cellular States and Molecular Features of Human Skin Pathology

immunology more details view paper
  • Downloaded 3,949 times
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    • Site-wide: 1,238 out of 94,912
    • In immunology: 41 out of 2,857
  • Year to date:
    • Site-wide: 742 out of 94,912
  • Since beginning of last month:
    • Site-wide: 1,509 out of 94,912

Sensory Neurons Innervate Peripheral Lymph Nodes and Locally Regulate Gene Expression in Postsynaptic Endothelium, Stromal Cells, and Innate Leukocytes

immunology more details view paper
  • Downloaded 3,305 times
  • Download rankings, all-time:
    • Site-wide: 1,673 out of 94,912
    • In immunology: 55 out of 2,857
  • Year to date:
    • Site-wide: 1,000 out of 94,912
  • Since beginning of last month:
    • Site-wide: 4,259 out of 94,912

T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 2,162 times
  • Download rankings, all-time:
    • Site-wide: 3,434 out of 94,912
    • In immunology: 100 out of 2,857
  • Year to date:
    • Site-wide: 30,705 out of 94,912
  • Since beginning of last month:
    • Site-wide: 33,904 out of 94,912

High-throughput organoid screening enables engineering of intestinal epithelial composition

bioengineering more details view paper
  • Downloaded 1,342 times
  • Download rankings, all-time:
    • Site-wide: 7,530 out of 94,912
    • In bioengineering: 145 out of 2,155
  • Year to date:
    • Site-wide: 1,226 out of 94,912
  • Since beginning of last month:
    • Site-wide: 1,637 out of 94,912

Reduced cellular diversity and an altered basal progenitor cell state inform epithelial barrier dysfunction in human type 2 immunity

immunology more details view paper
  • Downloaded 1,338 times
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    • Site-wide: 7,570 out of 94,912
    • In immunology: 209 out of 2,857
  • Year to date:
    • Site-wide: 27,223 out of 94,912
  • Since beginning of last month:
    • Site-wide: 45,828 out of 94,912

Identification of a master regulator of differentiation in Toxoplasma

microbiology more details view paper
  • Downloaded 1,308 times
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    • Site-wide: 7,883 out of 94,912
    • In microbiology: 498 out of 8,320
  • Year to date:
    • Site-wide: 20,114 out of 94,912
  • Since beginning of last month:
    • Site-wide: 36,298 out of 94,912

Integrated Single-Cell Analysis of Multicellular Immune Dynamics during Hyper-Acute HIV-1 Infection

immunology more details view paper
  • Downloaded 1,078 times
  • Download rankings, all-time:
    • Site-wide: 10,879 out of 94,912
    • In immunology: 293 out of 2,857
  • Year to date:
    • Site-wide: 9,865 out of 94,912
  • Since beginning of last month:
    • Site-wide: 15,583 out of 94,912

Single-cell analysis of upper airway cells reveals host-viral dynamics in influenza infected adults

genomics more details view paper
  • Downloaded 1,056 times
  • Download rankings, all-time:
    • Site-wide: 11,264 out of 94,912
    • In genomics: 1,578 out of 5,955
  • Year to date:
    • Site-wide: 1,782 out of 94,912
  • Since beginning of last month:
    • Site-wide: 2,300 out of 94,912

Alterations of multiple alveolar macrophage states in chronic obstructive pulmonary disease

systems biology more details view paper
  • Downloaded 991 times
  • Download rankings, all-time:
    • Site-wide: 12,450 out of 94,912
    • In systems biology: 330 out of 2,425
  • Year to date:
    • Site-wide: 1,962 out of 94,912
  • Since beginning of last month:
    • Site-wide: 3,271 out of 94,912

Linking single-cell measurements of mass, growth rate, and gene expression

bioengineering more details view paper
  • Downloaded 986 times
  • Download rankings, all-time:
    • Site-wide: 12,537 out of 94,912
    • In bioengineering: 247 out of 2,155
  • Year to date:
    • Site-wide: 55,906 out of 94,912
  • Since beginning of last month:
    • Site-wide: 72,412 out of 94,912

Spatially-Resolved Live Cell Tagging and Isolation Using Protected Photoactivatable Cell Dyes

systems biology more details view paper
  • Downloaded 856 times
  • Download rankings, all-time:
    • Site-wide: 15,659 out of 94,912
    • In systems biology: 423 out of 2,425
  • Year to date:
    • Site-wide: 2,428 out of 94,912
  • Since beginning of last month:
    • Site-wide: 13,974 out of 94,912

Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics

microbiology more details view paper
  • Downloaded 739 times
  • Download rankings, all-time:
    • Site-wide: 19,594 out of 94,912
    • In microbiology: 1,273 out of 8,320
  • Year to date:
    • Site-wide: 2,985 out of 94,912
  • Since beginning of last month:
    • Site-wide: 4,452 out of 94,912

IL-5Rα marks nasal polyp IgG4 and IgE-secreting cells in aspirin-exacerbated respiratory disease

immunology more details view paper
  • Downloaded 483 times
  • Download rankings, all-time:
    • Site-wide: 34,874 out of 94,912
    • In immunology: 922 out of 2,857
  • Year to date:
    • Site-wide: 41,522 out of 94,912
  • Since beginning of last month:
    • Site-wide: 41,396 out of 94,912

Single-cell analysis reveals mechanisms of plasticity of leukemia initiating cells

cancer biology more details view paper
  • Downloaded 465 times
  • Download rankings, all-time:
    • Site-wide: 36,461 out of 94,912
    • In cancer biology: 1,167 out of 3,367
  • Year to date:
    • Site-wide: 6,060 out of 94,912
  • Since beginning of last month:
    • Site-wide: 14,437 out of 94,912

Spatiotemporal single-cell profiling of gastrointestinal GVHD reveals invasive and resident memory T cell states.

immunology more details view paper
  • Downloaded 106 times
  • Download rankings, all-time:
    • Site-wide: 86,971 out of 94,912
    • In immunology: 2,520 out of 2,857
  • Year to date:
    • Site-wide: 46,373 out of 94,912
  • Since beginning of last month:
    • Site-wide: 5,524 out of 94,912

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