Author: Alex K. Shalek
- ORCiD: http://orcid.org/0000-0001-5670-8778
- Most recently observed institution: Broad Institute
Rankings
- All-time downloads: 44,556 (rank: 2,618 (tie) out of 510,799)
- Categories:
- bioengineering: 2,738 (rank: 506 out of 13,764)
- cancer biology: 2,171 (rank: 1,840 out of 31,491)
- genetic and genomic medicine: 1,501 (rank: 590 (tie) out of 6,821)
- genomics: 18,593 (rank: 523 out of 45,521)
- immunology: 14,600 (rank: 295 out of 27,749)
- infectious diseases: 334 (rank: 24,601 (tie) out of 32,278)
- microbiology: 2,383 (rank: 4,414 (tie) out of 52,238)
- systems biology: 2,236 (rank: 1,514 (tie) out of 12,795)
Downloads per author, site-wide
Preprints
Cyclin D3 drives inertial cell cycling in dark zone germinal center B cells
immunology more details view paperNo download data for this paper yet.
MR1-restricted MAIT cells from the human lung mucosal surface have distinct phenotypic, functional, and transcriptomic features that are preserved in HIV infection
immunology more details view paperNo download data for this paper yet.
Systematic comparative analysis of single cell RNA-sequencing methods
genomics more details view paper- Downloaded 12,984 times
- Download rankings, all-time:
- Site-wide: 437 out of 118,417
- In genomics: 31 out of 6,435
- Year to date:
- Site-wide: 1,058 out of 118,417
- Since beginning of last month:
- Site-wide: 1,487 out of 118,417
Highly Efficient, Massively-Parallel Single-Cell RNA-Seq Reveals Cellular States and Molecular Features of Human Skin Pathology
immunology more details view paper- Downloaded 4,448 times
- Download rankings, all-time:
- Site-wide: 1,882 out of 118,417
- In immunology: 40 out of 3,302
- Year to date:
- Site-wide: 2,175 out of 118,417
- Since beginning of last month:
- Site-wide: 3,046 out of 118,417
Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis
genomics more details view paper- Downloaded 4,232 times
- Download rankings, all-time:
- Site-wide: 2,034 out of 118,417
- In genomics: 250 out of 6,435
- Year to date:
- Site-wide: None out of 118,417
- Since beginning of last month:
- Site-wide: None out of 118,417
Sensory Neurons Innervate Peripheral Lymph Nodes and Locally Regulate Gene Expression in Postsynaptic Endothelium, Stromal Cells, and Innate Leukocytes
immunology more details view paper- Downloaded 3,671 times
- Download rankings, all-time:
- Site-wide: 2,483 out of 118,417
- In immunology: 59 out of 3,302
- Year to date:
- Site-wide: 2,796 out of 118,417
- Since beginning of last month:
- Site-wide: 5,338 out of 118,417
T helper cells modulate intestinal stem cell renewal and differentiation
immunology more details view paper- Downloaded 2,210 times
- Download rankings, all-time:
- Site-wide: 5,226 out of 118,417
- In immunology: 126 out of 3,302
- Year to date:
- Site-wide: 42,761 out of 118,417
- Since beginning of last month:
- Site-wide: 54,336 out of 118,417
High-throughput organoid screening enables engineering of intestinal epithelial composition
bioengineering more details view paper- Downloaded 1,727 times
- Download rankings, all-time:
- Site-wide: 7,485 out of 118,417
- In bioengineering: 115 out of 2,448
- Year to date:
- Site-wide: 3,159 out of 118,417
- Since beginning of last month:
- Site-wide: 5,190 out of 118,417
Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases
genetic and genomic medicine more details view paper- Downloaded 1,501 times
- Download rankings, all-time:
- Site-wide: 9,288 out of 118,417
- In genetic and genomic medicine: 22 out of 488
- Year to date:
- Site-wide: 3,749 out of 118,417
- Since beginning of last month:
- Site-wide: 682 out of 118,417
Single-cell analysis of upper airway cells reveals host-viral dynamics in influenza infected adults
genomics more details view paper- Downloaded 1,377 times
- Download rankings, all-time:
- Site-wide: 10,572 out of 118,417
- In genomics: 1,232 out of 6,435
- Year to date:
- Site-wide: 4,125 out of 118,417
- Since beginning of last month:
- Site-wide: 5,518 out of 118,417
Reduced cellular diversity and an altered basal progenitor cell state inform epithelial barrier dysfunction in human type 2 immunity
immunology more details view paper- Downloaded 1,374 times
- Download rankings, all-time:
- Site-wide: 10,620 out of 118,417
- In immunology: 262 out of 3,302
- Year to date:
- Site-wide: 42,055 out of 118,417
- Since beginning of last month:
- Site-wide: 86,403 out of 118,417
Transcriptional subtype-specific microenvironmental crosstalk and tumor cell plasticity in metastatic pancreatic cancer
cancer biology more details view paper- Downloaded 1,355 times
- Download rankings, all-time:
- Site-wide: 10,835 out of 118,417
- In cancer biology: 228 out of 3,748
- Year to date:
- Site-wide: 4,217 out of 118,417
- Since beginning of last month:
- Site-wide: 3,121 out of 118,417
Identification of a master regulator of differentiation in Toxoplasma
microbiology more details view paper- Downloaded 1,348 times
- Download rankings, all-time:
- Site-wide: 10,931 out of 118,417
- In microbiology: 594 out of 9,349
- Year to date:
- Site-wide: 33,162 out of 118,417
- Since beginning of last month:
- Site-wide: 41,926 out of 118,417
Alterations of multiple alveolar macrophage states in chronic obstructive pulmonary disease
systems biology more details view paper- Downloaded 1,282 times
- Download rankings, all-time:
- Site-wide: 11,768 out of 118,417
- In systems biology: 250 out of 2,636
- Year to date:
- Site-wide: 4,487 out of 118,417
- Since beginning of last month:
- Site-wide: 5,911 out of 118,417
Integrated Single-Cell Analysis of Multicellular Immune Dynamics during Hyper-Acute HIV-1 Infection
immunology more details view paper- Downloaded 1,128 times
- Download rankings, all-time:
- Site-wide: 14,272 out of 118,417
- In immunology: 361 out of 3,302
- Year to date:
- Site-wide: 19,147 out of 118,417
- Since beginning of last month:
- Site-wide: 57,087 out of 118,417
Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics
microbiology more details view paper- Downloaded 1,035 times
- Download rankings, all-time:
- Site-wide: 16,215 out of 118,417
- In microbiology: 877 out of 9,349
- Year to date:
- Site-wide: 5,782 out of 118,417
- Since beginning of last month:
- Site-wide: 7,265 out of 118,417
Linking single-cell measurements of mass, growth rate, and gene expression
bioengineering more details view paper- Downloaded 1,011 times
- Download rankings, all-time:
- Site-wide: 16,782 out of 118,417
- In bioengineering: 284 out of 2,448
- Year to date:
- Site-wide: 75,141 out of 118,417
- Since beginning of last month:
- Site-wide: 71,916 out of 118,417
Spatially-Resolved Live Cell Tagging and Isolation Using Protected Photoactivatable Cell Dyes
systems biology more details view paper- Downloaded 954 times
- Download rankings, all-time:
- Site-wide: 18,317 out of 118,417
- In systems biology: 400 out of 2,636
- Year to date:
- Site-wide: 6,369 out of 118,417
- Since beginning of last month:
- Site-wide: 23,647 out of 118,417
Single-cell profiling of tuberculosis lung granulomas reveals functional lymphocyte signatures of bacterial control
immunology more details view paper- Downloaded 610 times
- Download rankings, all-time:
- Site-wide: 34,123 out of 118,417
- In immunology: 872 out of 3,302
- Year to date:
- Site-wide: 10,909 out of 118,417
- Since beginning of last month:
- Site-wide: 1,085 out of 118,417
Single-cell analysis reveals mechanisms of plasticity of leukemia initiating cells
cancer biology more details view paper- Downloaded 522 times
- Download rankings, all-time:
- Site-wide: 41,373 out of 118,417
- In cancer biology: 1,159 out of 3,748
- Year to date:
- Site-wide: 13,267 out of 118,417
- Since beginning of last month:
- Site-wide: 44,516 out of 118,417
IL-5Rα marks nasal polyp IgG4 and IgE-secreting cells in aspirin-exacerbated respiratory disease
immunology more details view paper- Downloaded 511 times
- Download rankings, all-time:
- Site-wide: 42,421 out of 118,417
- In immunology: 1,077 out of 3,302
- Year to date:
- Site-wide: 59,402 out of 118,417
- Since beginning of last month:
- Site-wide: 64,807 out of 118,417
Single cell profiling of COVID-19 patients: an international data resource from multiple tissues
infectious diseases more details view paper- Downloaded 334 times
- Download rankings, all-time:
- Site-wide: 65,348 out of 118,417
- In infectious diseases: 2,443 out of 3,587
- Year to date:
- Site-wide: 23,235 out of 118,417
- Since beginning of last month:
- Site-wide: 2,399 out of 118,417
GM-CSF differentiation of human monocytes stabilizes macrophage state via oxidative signaling
immunology more details view paper- Downloaded 272 times
- Download rankings, all-time:
- Site-wide: 76,438 out of 118,417
- In immunology: 2,000 out of 3,302
- Year to date:
- Site-wide: 29,794 out of 118,417
- Since beginning of last month:
- Site-wide: 3,178 out of 118,417
Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial cell states
cancer biology more details view paper- Downloaded 244 times
- Download rankings, all-time:
- Site-wide: 82,153 out of 118,417
- In cancer biology: 2,459 out of 3,748
- Year to date:
- Site-wide: 33,860 out of 118,417
- Since beginning of last month:
- Site-wide: 3,687 out of 118,417
Spatiotemporal single-cell profiling of gastrointestinal GVHD reveals invasive and resident memory T cell states.
immunology more details view paper- Downloaded 229 times
- Download rankings, all-time:
- Site-wide: 85,209 out of 118,417
- In immunology: 2,257 out of 3,302
- Year to date:
- Site-wide: 36,539 out of 118,417
- Since beginning of last month:
- Site-wide: 16,951 out of 118,417
Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu
immunology more details view paper- Downloaded 147 times
- Download rankings, all-time:
- Site-wide: 101,139 out of 118,417
- In immunology: 2,732 out of 3,302
- Year to date:
- Site-wide: 58,885 out of 118,417
- Since beginning of last month:
- Site-wide: 7,096 out of 118,417
Measuring kinetics and metastatic propensity of CTCs by blood exchange between mice
cancer biology more details view paper- Downloaded 50 times
- Download rankings, all-time:
- Site-wide: 114,941 out of 118,417
- In cancer biology: 3,661 out of 3,748
- Year to date:
- Site-wide: 113,903 out of 118,417
- Since beginning of last month:
- Site-wide: 25,106 out of 118,417
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News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
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