Author: Alex K. Shalek
- ORCiD: http://orcid.org/0000-0001-5670-8778
- Most recently observed institution: Ragon Institute of MGH, MIT and Harvard
Rankings
- All-time downloads: 50,971 (rank: 2,565 )
- Categories:
- bioengineering: 2,964 (rank: 562 )
- cancer biology: 2,942 (rank: 1,346 (tie) )
- genetic and genomic medicine: 2,130 (rank: 548 (tie) )
- genomics: 19,708 (rank: 520 )
- immunology: 17,169 (rank: 452 )
- infectious diseases: 1,079 (rank: 18,246 (tie) )
- microbiology: 2,512 (rank: 4,831 (tie) )
- systems biology: 2,467 (rank: 1,496 )
Downloads per author, site-wide
Preprints
Systematic comparative analysis of single cell RNA-sequencing methods
genomics more details view paper- Downloaded 13,792 times
- Download rankings, all-time:
- Site-wide: 471
- In genomics: 29
- Year to date:
- Site-wide: 1,430
- Since beginning of last month:
- Site-wide: 1,430
Highly Efficient, Massively-Parallel Single-Cell RNA-Seq Reveals Cellular States and Molecular Features of Human Skin Pathology
immunology more details view paper- Downloaded 4,789 times
- Download rankings, all-time:
- Site-wide: 1,963
- In immunology: 50
- Year to date:
- Site-wide: 4,356
- Since beginning of last month:
- Site-wide: 4,356
Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis
genomics more details view paper- Downloaded 4,232 times
- Download rankings, all-time:
- Site-wide: 2,342
- In genomics: 266
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: None
Sensory Neurons Innervate Peripheral Lymph Nodes and Locally Regulate Gene Expression in Postsynaptic Endothelium, Stromal Cells, and Innate Leukocytes
immunology more details view paper- Downloaded 4,059 times
- Download rankings, all-time:
- Site-wide: 2,478
- In immunology: 68
- Year to date:
- Site-wide: 4,634
- Since beginning of last month:
- Site-wide: 4,634
T helper cells modulate intestinal stem cell renewal and differentiation
immunology more details view paper- Downloaded 2,244 times
- Download rankings, all-time:
- Site-wide: 5,882
- In immunology: 163
- Year to date:
- Site-wide: 57,629
- Since beginning of last month:
- Site-wide: 57,629
Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases
genetic and genomic medicine more details view paper- Downloaded 2,130 times
- Download rankings, all-time:
- Site-wide: 6,339
- In genetic and genomic medicine: 18
- Year to date:
- Site-wide: 1,849
- Since beginning of last month:
- Site-wide: 1,849
High-throughput organoid screening enables engineering of intestinal epithelial composition
bioengineering more details view paper- Downloaded 1,942 times
- Download rankings, all-time:
- Site-wide: 7,239
- In bioengineering: 116
- Year to date:
- Site-wide: 9,577
- Since beginning of last month:
- Site-wide: 9,577
Transcriptional subtype-specific microenvironmental crosstalk and tumor cell plasticity in metastatic pancreatic cancer
cancer biology more details view paper- Downloaded 1,742 times
- Download rankings, all-time:
- Site-wide: 8,548
- In cancer biology: 157
- Year to date:
- Site-wide: 3,125
- Since beginning of last month:
- Site-wide: 3,125
Single-cell analysis of upper airway cells reveals host-viral dynamics in influenza infected adults
genomics more details view paper- Downloaded 1,684 times
- Download rankings, all-time:
- Site-wide: 9,043
- In genomics: 1,019
- Year to date:
- Site-wide: 4,092
- Since beginning of last month:
- Site-wide: 4,092
Alterations of multiple alveolar macrophage states in chronic obstructive pulmonary disease
systems biology more details view paper- Downloaded 1,436 times
- Download rankings, all-time:
- Site-wide: 11,388
- In systems biology: 223
- Year to date:
- Site-wide: 10,691
- Since beginning of last month:
- Site-wide: 10,691
Reduced cellular diversity and an altered basal progenitor cell state inform epithelial barrier dysfunction in human type 2 immunity
immunology more details view paper- Downloaded 1,416 times
- Download rankings, all-time:
- Site-wide: 11,629
- In immunology: 317
- Year to date:
- Site-wide: 60,442
- Since beginning of last month:
- Site-wide: 60,442
Identification of a master regulator of differentiation in Toxoplasma
microbiology more details view paper- Downloaded 1,387 times
- Download rankings, all-time:
- Site-wide: 12,018
- In microbiology: 670
- Year to date:
- Site-wide: 53,910
- Since beginning of last month:
- Site-wide: 53,910
Integrated Single-Cell Analysis of Multicellular Immune Dynamics during Hyper-Acute HIV-1 Infection
immunology more details view paper- Downloaded 1,168 times
- Download rankings, all-time:
- Site-wide: 15,546
- In immunology: 430
- Year to date:
- Site-wide: 47,430
- Since beginning of last month:
- Site-wide: 47,430
Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics
microbiology more details view paper- Downloaded 1,125 times
- Download rankings, all-time:
- Site-wide: 16,470
- In microbiology: 917
- Year to date:
- Site-wide: 31,278
- Since beginning of last month:
- Site-wide: 31,278
Single cell profiling of COVID-19 patients: an international data resource from multiple tissues
infectious diseases more details view paper- Downloaded 1,079 times
- Download rankings, all-time:
- Site-wide: 17,547
- In infectious diseases: 1,499
- Year to date:
- Site-wide: 1,752
- Since beginning of last month:
- Site-wide: 1,752
Spatially-Resolved Live Cell Tagging and Isolation Using Protected Photoactivatable Cell Dyes
systems biology more details view paper- Downloaded 1,031 times
- Download rankings, all-time:
- Site-wide: 18,798
- In systems biology: 388
- Year to date:
- Site-wide: 29,993
- Since beginning of last month:
- Site-wide: 29,993
Linking single-cell measurements of mass, growth rate, and gene expression
bioengineering more details view paper- Downloaded 1,022 times
- Download rankings, all-time:
- Site-wide: 19,024
- In bioengineering: 321
- Year to date:
- Site-wide: 116,287
- Since beginning of last month:
- Site-wide: 116,287
Single-cell profiling of tuberculosis lung granulomas reveals functional lymphocyte signatures of bacterial control
immunology more details view paper- Downloaded 923 times
- Download rankings, all-time:
- Site-wide: 22,001
- In immunology: 621
- Year to date:
- Site-wide: 6,490
- Since beginning of last month:
- Site-wide: 6,490
Single-cell analysis reveals mechanisms of plasticity of leukemia initiating cells
cancer biology more details view paper- Downloaded 575 times
- Download rankings, all-time:
- Site-wide: 41,781
- In cancer biology: 1,158
- Year to date:
- Site-wide: 36,387
- Since beginning of last month:
- Site-wide: 36,387
IL-5Rα marks nasal polyp IgG4 and IgE-secreting cells in aspirin-exacerbated respiratory disease
immunology more details view paper- Downloaded 531 times
- Download rankings, all-time:
- Site-wide: 46,208
- In immunology: 1,244
- Year to date:
- Site-wide: 95,833
- Since beginning of last month:
- Site-wide: 95,833
Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial cell states
cancer biology more details view paper- Downloaded 519 times
- Download rankings, all-time:
- Site-wide: 47,381
- In cancer biology: 1,324
- Year to date:
- Site-wide: 6,059
- Since beginning of last month:
- Site-wide: 6,059
Cyclin D3 drives inertial cell cycling in dark zone germinal center B cells
immunology more details view paper- Downloaded 487 times
- Download rankings, all-time:
- Site-wide: 51,116
- In immunology: 1,391
- Year to date:
- Site-wide: 26,773
- Since beginning of last month:
- Site-wide: 26,773
Single Cell and Spatial Transcriptomics Defines the Cellular Architecture of the Antimicrobial Response Network in Human Leprosy Granulomas
immunology more details view paper- Downloaded 465 times
- Download rankings, all-time:
- Site-wide: 53,838
- In immunology: 1,455
- Year to date:
- Site-wide: 12,085
- Since beginning of last month:
- Site-wide: 12,085
GM-CSF differentiation of human monocytes stabilizes macrophage state via oxidative signaling
immunology more details view paper- Downloaded 377 times
- Download rankings, all-time:
- Site-wide: 66,492
- In immunology: 1,788
- Year to date:
- Site-wide: 22,384
- Since beginning of last month:
- Site-wide: 22,384
Spatiotemporal single-cell profiling of gastrointestinal GVHD reveals invasive and resident memory T cell states.
immunology more details view paper- Downloaded 344 times
- Download rankings, all-time:
- Site-wide: 72,029
- In immunology: 1,952
- Year to date:
- Site-wide: 16,094
- Since beginning of last month:
- Site-wide: 16,094
Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu
immunology more details view paper- Downloaded 242 times
- Download rankings, all-time:
- Site-wide: 92,466
- In immunology: 2,556
- Year to date:
- Site-wide: 22,388
- Since beginning of last month:
- Site-wide: 22,388
MR1-restricted MAIT cells from the human lung mucosal surface have distinct phenotypic, functional, and transcriptomic features that are preserved in HIV infection
immunology more details view paper- Downloaded 124 times
- Download rankings, all-time:
- Site-wide: 116,629
- In immunology: 3,277
- Year to date:
- Site-wide: 30,669
- Since beginning of last month:
- Site-wide: 30,669
Measuring kinetics and metastatic propensity of CTCs by blood exchange between mice
cancer biology more details view paper- Downloaded 106 times
- Download rankings, all-time:
- Site-wide: 119,855
- In cancer biology: 3,761
- Year to date:
- Site-wide: 59,478
- Since beginning of last month:
- Site-wide: 59,478
PanLingua
News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
- 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
- 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
- 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
- 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
- 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
- 22 Jan 2019: Nature just published an article about Rxivist and our data.
- 13 Jan 2019: The Rxivist preprint is live!