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Author: Alex K. Shalek

Rankings

  • All-time downloads: 50,971 (rank: 2,565 )
  • Categories:
    • bioengineering: 2,964 (rank: 562 )
    • cancer biology: 2,942 (rank: 1,346 (tie) )
    • genetic and genomic medicine: 2,130 (rank: 548 (tie) )
    • genomics: 19,708 (rank: 520 )
    • immunology: 17,169 (rank: 452 )
    • infectious diseases: 1,079 (rank: 18,246 (tie) )
    • microbiology: 2,512 (rank: 4,831 (tie) )
    • systems biology: 2,467 (rank: 1,496 )

Downloads per author, site-wide

Preprints

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 13,792 times
  • Download rankings, all-time:
    • Site-wide: 471
    • In genomics: 29
  • Year to date:
    • Site-wide: 1,430
  • Since beginning of last month:
    • Site-wide: 1,430

Highly Efficient, Massively-Parallel Single-Cell RNA-Seq Reveals Cellular States and Molecular Features of Human Skin Pathology

immunology more details view paper
  • Downloaded 4,789 times
  • Download rankings, all-time:
    • Site-wide: 1,963
    • In immunology: 50
  • Year to date:
    • Site-wide: 4,356
  • Since beginning of last month:
    • Site-wide: 4,356

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 4,232 times
  • Download rankings, all-time:
    • Site-wide: 2,342
    • In genomics: 266
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Sensory Neurons Innervate Peripheral Lymph Nodes and Locally Regulate Gene Expression in Postsynaptic Endothelium, Stromal Cells, and Innate Leukocytes

immunology more details view paper
  • Downloaded 4,059 times
  • Download rankings, all-time:
    • Site-wide: 2,478
    • In immunology: 68
  • Year to date:
    • Site-wide: 4,634
  • Since beginning of last month:
    • Site-wide: 4,634

T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 2,244 times
  • Download rankings, all-time:
    • Site-wide: 5,882
    • In immunology: 163
  • Year to date:
    • Site-wide: 57,629
  • Since beginning of last month:
    • Site-wide: 57,629

Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases

genetic and genomic medicine more details view paper
  • Downloaded 2,130 times
  • Download rankings, all-time:
    • Site-wide: 6,339
    • In genetic and genomic medicine: 18
  • Year to date:
    • Site-wide: 1,849
  • Since beginning of last month:
    • Site-wide: 1,849

High-throughput organoid screening enables engineering of intestinal epithelial composition

bioengineering more details view paper
  • Downloaded 1,942 times
  • Download rankings, all-time:
    • Site-wide: 7,239
    • In bioengineering: 116
  • Year to date:
    • Site-wide: 9,577
  • Since beginning of last month:
    • Site-wide: 9,577

Transcriptional subtype-specific microenvironmental crosstalk and tumor cell plasticity in metastatic pancreatic cancer

cancer biology more details view paper
  • Downloaded 1,742 times
  • Download rankings, all-time:
    • Site-wide: 8,548
    • In cancer biology: 157
  • Year to date:
    • Site-wide: 3,125
  • Since beginning of last month:
    • Site-wide: 3,125

Single-cell analysis of upper airway cells reveals host-viral dynamics in influenza infected adults

genomics more details view paper
  • Downloaded 1,684 times
  • Download rankings, all-time:
    • Site-wide: 9,043
    • In genomics: 1,019
  • Year to date:
    • Site-wide: 4,092
  • Since beginning of last month:
    • Site-wide: 4,092

Alterations of multiple alveolar macrophage states in chronic obstructive pulmonary disease

systems biology more details view paper
  • Downloaded 1,436 times
  • Download rankings, all-time:
    • Site-wide: 11,388
    • In systems biology: 223
  • Year to date:
    • Site-wide: 10,691
  • Since beginning of last month:
    • Site-wide: 10,691

Reduced cellular diversity and an altered basal progenitor cell state inform epithelial barrier dysfunction in human type 2 immunity

immunology more details view paper
  • Downloaded 1,416 times
  • Download rankings, all-time:
    • Site-wide: 11,629
    • In immunology: 317
  • Year to date:
    • Site-wide: 60,442
  • Since beginning of last month:
    • Site-wide: 60,442

Identification of a master regulator of differentiation in Toxoplasma

microbiology more details view paper
  • Downloaded 1,387 times
  • Download rankings, all-time:
    • Site-wide: 12,018
    • In microbiology: 670
  • Year to date:
    • Site-wide: 53,910
  • Since beginning of last month:
    • Site-wide: 53,910

Integrated Single-Cell Analysis of Multicellular Immune Dynamics during Hyper-Acute HIV-1 Infection

immunology more details view paper
  • Downloaded 1,168 times
  • Download rankings, all-time:
    • Site-wide: 15,546
    • In immunology: 430
  • Year to date:
    • Site-wide: 47,430
  • Since beginning of last month:
    • Site-wide: 47,430

Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics

microbiology more details view paper
  • Downloaded 1,125 times
  • Download rankings, all-time:
    • Site-wide: 16,470
    • In microbiology: 917
  • Year to date:
    • Site-wide: 31,278
  • Since beginning of last month:
    • Site-wide: 31,278

Single cell profiling of COVID-19 patients: an international data resource from multiple tissues

infectious diseases more details view paper
  • Downloaded 1,079 times
  • Download rankings, all-time:
    • Site-wide: 17,547
    • In infectious diseases: 1,499
  • Year to date:
    • Site-wide: 1,752
  • Since beginning of last month:
    • Site-wide: 1,752

Spatially-Resolved Live Cell Tagging and Isolation Using Protected Photoactivatable Cell Dyes

systems biology more details view paper
  • Downloaded 1,031 times
  • Download rankings, all-time:
    • Site-wide: 18,798
    • In systems biology: 388
  • Year to date:
    • Site-wide: 29,993
  • Since beginning of last month:
    • Site-wide: 29,993

Linking single-cell measurements of mass, growth rate, and gene expression

bioengineering more details view paper
  • Downloaded 1,022 times
  • Download rankings, all-time:
    • Site-wide: 19,024
    • In bioengineering: 321
  • Year to date:
    • Site-wide: 116,287
  • Since beginning of last month:
    • Site-wide: 116,287

Single-cell profiling of tuberculosis lung granulomas reveals functional lymphocyte signatures of bacterial control

immunology more details view paper
  • Downloaded 923 times
  • Download rankings, all-time:
    • Site-wide: 22,001
    • In immunology: 621
  • Year to date:
    • Site-wide: 6,490
  • Since beginning of last month:
    • Site-wide: 6,490

Single-cell analysis reveals mechanisms of plasticity of leukemia initiating cells

cancer biology more details view paper
  • Downloaded 575 times
  • Download rankings, all-time:
    • Site-wide: 41,781
    • In cancer biology: 1,158
  • Year to date:
    • Site-wide: 36,387
  • Since beginning of last month:
    • Site-wide: 36,387

IL-5Rα marks nasal polyp IgG4 and IgE-secreting cells in aspirin-exacerbated respiratory disease

immunology more details view paper
  • Downloaded 531 times
  • Download rankings, all-time:
    • Site-wide: 46,208
    • In immunology: 1,244
  • Year to date:
    • Site-wide: 95,833
  • Since beginning of last month:
    • Site-wide: 95,833

Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial cell states

cancer biology more details view paper
  • Downloaded 519 times
  • Download rankings, all-time:
    • Site-wide: 47,381
    • In cancer biology: 1,324
  • Year to date:
    • Site-wide: 6,059
  • Since beginning of last month:
    • Site-wide: 6,059

Cyclin D3 drives inertial cell cycling in dark zone germinal center B cells

immunology more details view paper
  • Downloaded 487 times
  • Download rankings, all-time:
    • Site-wide: 51,116
    • In immunology: 1,391
  • Year to date:
    • Site-wide: 26,773
  • Since beginning of last month:
    • Site-wide: 26,773

Single Cell and Spatial Transcriptomics Defines the Cellular Architecture of the Antimicrobial Response Network in Human Leprosy Granulomas

immunology more details view paper
  • Downloaded 465 times
  • Download rankings, all-time:
    • Site-wide: 53,838
    • In immunology: 1,455
  • Year to date:
    • Site-wide: 12,085
  • Since beginning of last month:
    • Site-wide: 12,085

GM-CSF differentiation of human monocytes stabilizes macrophage state via oxidative signaling

immunology more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 66,492
    • In immunology: 1,788
  • Year to date:
    • Site-wide: 22,384
  • Since beginning of last month:
    • Site-wide: 22,384

Spatiotemporal single-cell profiling of gastrointestinal GVHD reveals invasive and resident memory T cell states.

immunology more details view paper
  • Downloaded 344 times
  • Download rankings, all-time:
    • Site-wide: 72,029
    • In immunology: 1,952
  • Year to date:
    • Site-wide: 16,094
  • Since beginning of last month:
    • Site-wide: 16,094

Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu

immunology more details view paper
  • Downloaded 242 times
  • Download rankings, all-time:
    • Site-wide: 92,466
    • In immunology: 2,556
  • Year to date:
    • Site-wide: 22,388
  • Since beginning of last month:
    • Site-wide: 22,388

MR1-restricted MAIT cells from the human lung mucosal surface have distinct phenotypic, functional, and transcriptomic features that are preserved in HIV infection

immunology more details view paper
  • Downloaded 124 times
  • Download rankings, all-time:
    • Site-wide: 116,629
    • In immunology: 3,277
  • Year to date:
    • Site-wide: 30,669
  • Since beginning of last month:
    • Site-wide: 30,669

Measuring kinetics and metastatic propensity of CTCs by blood exchange between mice

cancer biology more details view paper
  • Downloaded 106 times
  • Download rankings, all-time:
    • Site-wide: 119,855
    • In cancer biology: 3,761
  • Year to date:
    • Site-wide: 59,478
  • Since beginning of last month:
    • Site-wide: 59,478

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