Author: Itoshi Nikaido

Downloads per author, site-wide

Preprints

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

• Downloaded 11,499 times
• Download rankings, all-time:
  • Site-wide: 205 out of 94,912
  • In genomics: 39 out of 5,955
• Year to date:
  • Site-wide: 544 out of 94,912
• Since beginning of last month:
  • Site-wide: 1,427 out of 94,912

Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads

• Downloaded 3,260 times
• Download rankings, all-time:
  • Site-wide: 1,714 out of 94,912
  • In genomics: 343 out of 5,955
• Year to date:
  • Site-wide: 24,113 out of 94,912
• Since beginning of last month:
  • Site-wide: 22,533 out of 94,912

Uncovering hypergraphs of cell-cell interaction from single cell RNA-sequencing data

• Downloaded 2,821 times
• Download rankings, all-time:
  • Site-wide: 2,202 out of 94,912
  • In bioinformatics: 389 out of 8,837
• Year to date:
  • Site-wide: 2,607 out of 94,912
• Since beginning of last month:
  • Site-wide: 5,761 out of 94,912

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

• Downloaded 1,868 times
• Download rankings, all-time:
  • Site-wide: 4,355 out of 94,912
  • In bioinformatics: 794 out of 8,837
• Year to date:
  • Site-wide: 5,693 out of 94,912
• Since beginning of last month:
  • Site-wide: 12,022 out of 94,912

SCODE: An efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation

• Downloaded 1,758 times
• Download rankings, all-time:
  • Site-wide: 4,815 out of 94,912
  • In bioinformatics: 877 out of 8,837
• Year to date:
  • Site-wide: 60,960 out of 94,912
• Since beginning of last month:
  • Site-wide: 42,951 out of 94,912

CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA-sequencing

• Downloaded 1,391 times
• Download rankings, all-time:
  • Site-wide: 7,103 out of 94,912
  • In bioinformatics: 1,227 out of 8,837
• Year to date:
  • Site-wide: 44,955 out of 94,912
• Since beginning of last month:
  • Site-wide: 36,609 out of 94,912

Genome-wide analysis of transcriptional bursting-induced noise in mammalian cells

• Downloaded 1,356 times
• Download rankings, all-time:
  • Site-wide: 7,412 out of 94,912
  • In systems biology: 201 out of 2,425
• Year to date:
  • Site-wide: 5,560 out of 94,912
• Since beginning of last month:
  • Site-wide: 21,171 out of 94,912

Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets

• Downloaded 843 times
• Download rankings, all-time:
  • Site-wide: 16,068 out of 94,912
  • In bioinformatics: 2,460 out of 8,837
• Year to date:
  • Site-wide: 22,493 out of 94,912
• Since beginning of last month:
  • Site-wide: 61,320 out of 94,912

Local states of chromatin compaction at transcription start sites control transcription levels

• Downloaded 675 times
• Download rankings, all-time:
  • Site-wide: 22,417 out of 94,912
  • In molecular biology: 735 out of 3,265
• Year to date:
  • Site-wide: 32,113 out of 94,912
• Since beginning of last month:
  • Site-wide: 24,105 out of 94,912

A NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data

• Downloaded 627 times
• Download rankings, all-time:
  • Site-wide: 24,947 out of 94,912
  • In bioinformatics: 3,449 out of 8,837
• Year to date:
  • Site-wide: 79,898 out of 94,912
• Since beginning of last month:
  • Site-wide: 73,790 out of 94,912

An efficient gene regulatory network inference algorithm for early Drosophila melanogaster embryogenesis

• Downloaded 548 times
• Download rankings, all-time:
  • Site-wide: 29,757 out of 94,912
  • In bioinformatics: 3,918 out of 8,837
• Year to date:
  • Site-wide: 81,758 out of 94,912
• Since beginning of last month:
  • Site-wide: 52,658 out of 94,912