Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,655 bioRxiv papers from 298,484 authors.

Author: Itoshi Nikaido

Rankings

  • All-time downloads: 21,059 (rank: 1,309 out of 298,484)
  • Categories:
    • bioinformatics: 7,862 (rank: 488 out of 26,024)
    • genomics: 11,881 (rank: 841 (tie) out of 34,054)
    • molecular biology: 488 (rank: 5,095 (tie) out of 14,336)
    • systems biology: 828 (rank: 2,518 (tie) out of 8,983)

Downloads per author, site-wide

Preprints

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 8,816 times
  • Download rankings, all-time:
    • Site-wide: 155 out of 67,655
    • In genomics: 46 out of 4,583
  • Year to date:
    • Site-wide: 32 out of 67,655
  • Since beginning of last month:
    • Site-wide: 97 out of 67,655

Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads

genomics more details view paper
  • Downloaded 3,065 times
  • Download rankings, all-time:
    • Site-wide: 1,146 out of 67,655
    • In genomics: 267 out of 4,583
  • Year to date:
    • Site-wide: 12,069 out of 67,655
  • Since beginning of last month:
    • Site-wide: 10,930 out of 67,655

Uncovering hypergraphs of cell-cell interaction from single cell RNA-sequencing data

bioinformatics more details view paper
  • Downloaded 1,944 times
  • Download rankings, all-time:
    • Site-wide: 2,585 out of 67,655
    • In bioinformatics: 515 out of 6,659
  • Year to date:
    • Site-wide: 582 out of 67,655
  • Since beginning of last month:
    • Site-wide: 1,804 out of 67,655

SCODE: An efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation

bioinformatics more details view paper
  • Downloaded 1,672 times
  • Download rankings, all-time:
    • Site-wide: 3,324 out of 67,655
    • In bioinformatics: 659 out of 6,659
  • Year to date:
    • Site-wide: 45,338 out of 67,655
  • Since beginning of last month:
    • Site-wide: 42,890 out of 67,655

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

bioinformatics more details view paper
  • Downloaded 1,329 times
  • Download rankings, all-time:
    • Site-wide: 4,900 out of 67,655
    • In bioinformatics: 944 out of 6,659
  • Year to date:
    • Site-wide: 1,230 out of 67,655
  • Since beginning of last month:
    • Site-wide: 2,517 out of 67,655

CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA-sequencing

bioinformatics more details view paper
  • Downloaded 1,272 times
  • Download rankings, all-time:
    • Site-wide: 5,259 out of 67,655
    • In bioinformatics: 1,007 out of 6,659
  • Year to date:
    • Site-wide: 10,675 out of 67,655
  • Since beginning of last month:
    • Site-wide: 24,372 out of 67,655

Genome-wide analysis of transcriptional bursting-induced noise in mammalian cells

systems biology more details view paper
  • Downloaded 828 times
  • Download rankings, all-time:
    • Site-wide: 10,596 out of 67,655
    • In systems biology: 297 out of 1,872
  • Year to date:
    • Site-wide: 2,793 out of 67,655
  • Since beginning of last month:
    • Site-wide: 2,869 out of 67,655

Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets

bioinformatics more details view paper
  • Downloaded 633 times
  • Download rankings, all-time:
    • Site-wide: 15,622 out of 67,655
    • In bioinformatics: 2,428 out of 6,659
  • Year to date:
    • Site-wide: 4,453 out of 67,655
  • Since beginning of last month:
    • Site-wide: 8,394 out of 67,655

A NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 553 times
  • Download rankings, all-time:
    • Site-wide: 18,815 out of 67,655
    • In bioinformatics: 2,813 out of 6,659
  • Year to date:
    • Site-wide: 5,595 out of 67,655
  • Since beginning of last month:
    • Site-wide: 10,468 out of 67,655

Local states of chromatin compaction at transcription start sites control transcription levels

molecular biology more details view paper
  • Downloaded 488 times
  • Download rankings, all-time:
    • Site-wide: 22,010 out of 67,655
    • In molecular biology: 645 out of 2,165
  • Year to date:
    • Site-wide: 6,918 out of 67,655
  • Since beginning of last month:
    • Site-wide: 2,117 out of 67,655

An efficient gene regulatory network inference algorithm for early Drosophila melanogaster embryogenesis

bioinformatics more details view paper
  • Downloaded 459 times
  • Download rankings, all-time:
    • Site-wide: 23,751 out of 67,655
    • In bioinformatics: 3,328 out of 6,659
  • Year to date:
    • Site-wide: 54,005 out of 67,655
  • Since beginning of last month:
    • Site-wide: None out of 67,655

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News