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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,343 bioRxiv papers from 319,280 authors.

Author: Itoshi Nikaido

Rankings

  • All-time downloads: 22,598 (rank: 1,297 out of 318,846)
  • Categories:
    • bioinformatics: 8,407 (rank: 485 out of 27,655)
    • genomics: 12,700 (rank: 821 (tie) out of 35,538)
    • molecular biology: 554 (rank: 4,992 (tie) out of 15,627)
    • systems biology: 937 (rank: 2,501 (tie) out of 9,613)

Downloads per author, site-wide

Preprints

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 9,600 times
  • Download rankings, all-time:
    • Site-wide: 154 out of 73,249
    • In genomics: 41 out of 4,863
  • Year to date:
    • Site-wide: 259 out of 73,249
  • Since beginning of last month:
    • Site-wide: 259 out of 73,249

Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads

genomics more details view paper
  • Downloaded 3,100 times
  • Download rankings, all-time:
    • Site-wide: 1,250 out of 73,249
    • In genomics: 281 out of 4,863
  • Year to date:
    • Site-wide: 27,296 out of 73,249
  • Since beginning of last month:
    • Site-wide: 27,296 out of 73,249

Uncovering hypergraphs of cell-cell interaction from single cell RNA-sequencing data

bioinformatics more details view paper
  • Downloaded 2,151 times
  • Download rankings, all-time:
    • Site-wide: 2,382 out of 73,249
    • In bioinformatics: 470 out of 7,143
  • Year to date:
    • Site-wide: 2,553 out of 73,249
  • Since beginning of last month:
    • Site-wide: 2,553 out of 73,249

SCODE: An efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation

bioinformatics more details view paper
  • Downloaded 1,694 times
  • Download rankings, all-time:
    • Site-wide: 3,581 out of 73,249
    • In bioinformatics: 706 out of 7,143
  • Year to date:
    • Site-wide: 44,424 out of 73,249
  • Since beginning of last month:
    • Site-wide: 44,424 out of 73,249

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

bioinformatics more details view paper
  • Downloaded 1,484 times
  • Download rankings, all-time:
    • Site-wide: 4,507 out of 73,249
    • In bioinformatics: 861 out of 7,143
  • Year to date:
    • Site-wide: 4,552 out of 73,249
  • Since beginning of last month:
    • Site-wide: 4,552 out of 73,249

CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA-sequencing

bioinformatics more details view paper
  • Downloaded 1,310 times
  • Download rankings, all-time:
    • Site-wide: 5,526 out of 73,249
    • In bioinformatics: 1,049 out of 7,143
  • Year to date:
    • Site-wide: 21,673 out of 73,249
  • Since beginning of last month:
    • Site-wide: 21,673 out of 73,249

Genome-wide analysis of transcriptional bursting-induced noise in mammalian cells

systems biology more details view paper
  • Downloaded 937 times
  • Download rankings, all-time:
    • Site-wide: 9,650 out of 73,249
    • In systems biology: 274 out of 2,007
  • Year to date:
    • Site-wide: 6,971 out of 73,249
  • Since beginning of last month:
    • Site-wide: 6,971 out of 73,249

Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets

bioinformatics more details view paper
  • Downloaded 682 times
  • Download rankings, all-time:
    • Site-wide: 15,572 out of 73,249
    • In bioinformatics: 2,424 out of 7,143
  • Year to date:
    • Site-wide: 19,711 out of 73,249
  • Since beginning of last month:
    • Site-wide: 19,711 out of 73,249

A NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 583 times
  • Download rankings, all-time:
    • Site-wide: 19,499 out of 73,249
    • In bioinformatics: 2,900 out of 7,143
  • Year to date:
    • Site-wide: 55,674 out of 73,249
  • Since beginning of last month:
    • Site-wide: 55,674 out of 73,249

Local states of chromatin compaction at transcription start sites control transcription levels

molecular biology more details view paper
  • Downloaded 554 times
  • Download rankings, all-time:
    • Site-wide: 20,861 out of 73,249
    • In molecular biology: 622 out of 2,386
  • Year to date:
    • Site-wide: 24,734 out of 73,249
  • Since beginning of last month:
    • Site-wide: 24,734 out of 73,249

An efficient gene regulatory network inference algorithm for early Drosophila melanogaster embryogenesis

bioinformatics more details view paper
  • Downloaded 503 times
  • Download rankings, all-time:
    • Site-wide: 23,692 out of 73,249
    • In bioinformatics: 3,314 out of 7,143
  • Year to date:
    • Site-wide: 65,383 out of 73,249
  • Since beginning of last month:
    • Site-wide: 65,383 out of 73,249

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