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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,666 bioRxiv papers from 278,077 authors.

Author: Rafael A. Irizarry

Rankings

  • All-time downloads: 60,713 (rank: 196 out of 278,077)
  • Categories:
    • bioinformatics: 22,747 (rank: 69 out of 24,398)
    • developmental biology: 593 (rank: 2,697 (tie) out of 10,310)
    • epidemiology: 1,471 (rank: 620 (tie) out of 9,528)
    • genomics: 35,902 (rank: 142 out of 31,942)

Downloads per author, site-wide

Preprints

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 18,706 times
  • Download rankings, all-time:
    • Site-wide: 33 out of 62,666
    • In bioinformatics: 3 out of 6,243
  • Year to date:
    • Site-wide: 224 out of 62,666
  • Since beginning of last month:
    • Site-wide: 187 out of 62,666

When to use Quantile Normalization?

genomics more details view paper
  • Downloaded 13,130 times
  • Download rankings, all-time:
    • Site-wide: 61 out of 62,666
    • In genomics: 17 out of 4,312
  • Year to date:
    • Site-wide: 187 out of 62,666
  • Since beginning of last month:
    • Site-wide: 222 out of 62,666

Missing Data and Technical Variability in Single-Cell RNA- Sequencing Experiments

genomics more details view paper
  • Downloaded 9,699 times
  • Download rankings, all-time:
    • Site-wide: 112 out of 62,666
    • In genomics: 37 out of 4,312
  • Year to date:
    • Site-wide: 1,642 out of 62,666
  • Since beginning of last month:
    • Site-wide: 3,630 out of 62,666

Feature Selection and Dimension Reduction for Single Cell RNA-Seq based on a Multinomial Model

genomics more details view paper
  • Downloaded 4,898 times
  • Download rankings, all-time:
    • Site-wide: 416 out of 62,666
    • In genomics: 108 out of 4,312
  • Year to date:
    • Site-wide: 73 out of 62,666
  • Since beginning of last month:
    • Site-wide: 362 out of 62,666

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,173 times
  • Download rankings, all-time:
    • Site-wide: 1,920 out of 62,666
    • In bioinformatics: 393 out of 6,243
  • Year to date:
    • Site-wide: 37,535 out of 62,666
  • Since beginning of last month:
    • Site-wide: 56,336 out of 62,666

Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing

genomics more details view paper
  • Downloaded 1,540 times
  • Download rankings, all-time:
    • Site-wide: 3,482 out of 62,666
    • In genomics: 658 out of 4,312
  • Year to date:
    • Site-wide: 12,019 out of 62,666
  • Since beginning of last month:
    • Site-wide: 18,469 out of 62,666

Varying-Censoring Aware Matrix Factorization for Single Cell RNA-Sequencing

genomics more details view paper
  • Downloaded 1,491 times
  • Download rankings, all-time:
    • Site-wide: 3,664 out of 62,666
    • In genomics: 682 out of 4,312
  • Year to date:
    • Site-wide: 36,068 out of 62,666
  • Since beginning of last month:
    • Site-wide: 46,027 out of 62,666

Post-Hurricane Vital Statistics Expose Fragility of Puerto Rico's Health System

epidemiology more details view paper
  • Downloaded 1,471 times
  • Download rankings, all-time:
    • Site-wide: 3,746 out of 62,666
    • In epidemiology: 37 out of 1,556
  • Year to date:
    • Site-wide: 2,286 out of 62,666
  • Since beginning of last month:
    • Site-wide: 6,502 out of 62,666

Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-Seq data

genomics more details view paper
  • Downloaded 1,458 times
  • Download rankings, all-time:
    • Site-wide: 3,810 out of 62,666
    • In genomics: 704 out of 4,312
  • Year to date:
    • Site-wide: 25,420 out of 62,666
  • Since beginning of last month:
    • Site-wide: 22,868 out of 62,666

Smooth Quantile Normalization

genomics more details view paper
  • Downloaded 1,383 times
  • Download rankings, all-time:
    • Site-wide: 4,152 out of 62,666
    • In genomics: 758 out of 4,312
  • Year to date:
    • Site-wide: 15,197 out of 62,666
  • Since beginning of last month:
    • Site-wide: 19,838 out of 62,666

Selection Corrected Statistical Inference for Region Detection with High-throughput Assays

bioinformatics more details view paper
  • Downloaded 1,161 times
  • Download rankings, all-time:
    • Site-wide: 5,529 out of 62,666
    • In bioinformatics: 1,066 out of 6,243
  • Year to date:
    • Site-wide: 33,126 out of 62,666
  • Since beginning of last month:
    • Site-wide: 23,816 out of 62,666

Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation

genomics more details view paper
  • Downloaded 1,077 times
  • Download rankings, all-time:
    • Site-wide: 6,279 out of 62,666
    • In genomics: 1,043 out of 4,312
  • Year to date:
    • Site-wide: 10,637 out of 62,666
  • Since beginning of last month:
    • Site-wide: 19,480 out of 62,666

High-throughput identification of RNA nuclear enrichment sequences

genomics more details view paper
  • Downloaded 767 times
  • Download rankings, all-time:
    • Site-wide: 10,654 out of 62,666
    • In genomics: 1,532 out of 4,312
  • Year to date:
    • Site-wide: 52,894 out of 62,666
  • Since beginning of last month:
    • Site-wide: 41,731 out of 62,666

Correcting For Cell-Type Heterogeneity In Epigenome-Wide Association Studies: Premature Analyses And Conclusions

bioinformatics more details view paper
  • Downloaded 707 times
  • Download rankings, all-time:
    • Site-wide: 11,976 out of 62,666
    • In bioinformatics: 1,989 out of 6,243
  • Year to date:
    • Site-wide: 49,341 out of 62,666
  • Since beginning of last month:
    • Site-wide: 53,829 out of 62,666

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

developmental biology more details view paper
  • Downloaded 593 times
  • Download rankings, all-time:
    • Site-wide: 15,353 out of 62,666
    • In developmental biology: 366 out of 1,870
  • Year to date:
    • Site-wide: 7,814 out of 62,666
  • Since beginning of last month:
    • Site-wide: 19,231 out of 62,666

Technology-independent estimation of cell type composition using differentially methylated regions

genomics more details view paper
  • Downloaded 459 times
  • Download rankings, all-time:
    • Site-wide: 21,241 out of 62,666
    • In genomics: 2,396 out of 4,312
  • Year to date:
    • Site-wide: 47,630 out of 62,666
  • Since beginning of last month:
    • Site-wide: 36,972 out of 62,666

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