Rxivist logo

Author: Rafael A. Irizarry

Rankings

  • All-time downloads: 65,322 (rank: 2,010 )
  • Categories:
    • bioinformatics: 4,591 (rank: 2,486 (tie) )
    • developmental biology: 1,034 (rank: 3,470 (tie) )
    • epidemiology: 6,089 (rank: 1,897 (tie) )
    • genomics: 53,608 (rank: 139 )

Downloads per author, site-wide

Preprints

When to use Quantile Normalization?

genomics more details view paper
  • Downloaded 19,212 times
  • Download rankings, all-time:
    • Site-wide: 335
    • In genomics: 15
  • Year to date:
    • Site-wide: 1,438
  • Since beginning of last month:
    • Site-wide: 1,438

Missing Data and Technical Variability in Single-Cell RNA- Sequencing Experiments

genomics more details view paper
  • Downloaded 10,813 times
  • Download rankings, all-time:
    • Site-wide: 673
    • In genomics: 54
  • Year to date:
    • Site-wide: 9,921
  • Since beginning of last month:
    • Site-wide: 9,921

Feature Selection and Dimension Reduction for Single Cell RNA-Seq based on a Multinomial Model

genomics more details view paper
  • Downloaded 6,718 times
  • Download rankings, all-time:
    • Site-wide: 1,230
    • In genomics: 119
  • Year to date:
    • Site-wide: 47,843
  • Since beginning of last month:
    • Site-wide: 47,843

Monitoring Health Systems by Estimating Excess Mortality

epidemiology more details view paper
  • Downloaded 3,896 times
  • Download rankings, all-time:
    • Site-wide: 2,631
    • In epidemiology: 276
  • Year to date:
    • Site-wide: 1,734
  • Since beginning of last month:
    • Site-wide: 1,734

Robust decomposition of cell type mixtures in spatial transcriptomics

genomics more details view paper
  • Downloaded 2,980 times
  • Download rankings, all-time:
    • Site-wide: 3,873
    • In genomics: 455
  • Year to date:
    • Site-wide: 1,039
  • Since beginning of last month:
    • Site-wide: 1,039

A probabilistic gene expression barcode for annotation of cell-types from single cell RNA-seq data

genomics more details view paper
  • Downloaded 2,914 times
  • Download rankings, all-time:
    • Site-wide: 3,984
    • In genomics: 464
  • Year to date:
    • Site-wide: 5,831
  • Since beginning of last month:
    • Site-wide: 5,831

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,379 times
  • Download rankings, all-time:
    • Site-wide: 5,406
    • In bioinformatics: 623
  • Year to date:
    • Site-wide: 58,876
  • Since beginning of last month:
    • Site-wide: 58,876

Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing

genomics more details view paper
  • Downloaded 1,910 times
  • Download rankings, all-time:
    • Site-wide: 7,411
    • In genomics: 824
  • Year to date:
    • Site-wide: 42,983
  • Since beginning of last month:
    • Site-wide: 42,983

Post-Hurricane Vital Statistics Expose Fragility of Puerto Rico's Health System

epidemiology more details view paper
  • Downloaded 1,875 times
  • Download rankings, all-time:
    • Site-wide: 7,609
    • In epidemiology: 587
  • Year to date:
    • Site-wide: 53,967
  • Since beginning of last month:
    • Site-wide: 53,967

Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-Seq data

genomics more details view paper
  • Downloaded 1,692 times
  • Download rankings, all-time:
    • Site-wide: 8,940
    • In genomics: 1,010
  • Year to date:
    • Site-wide: 45,636
  • Since beginning of last month:
    • Site-wide: 45,636

Smooth Quantile Normalization

genomics more details view paper
  • Downloaded 1,685 times
  • Download rankings, all-time:
    • Site-wide: 9,011
    • In genomics: 1,017
  • Year to date:
    • Site-wide: 38,646
  • Since beginning of last month:
    • Site-wide: 38,646

Varying-Censoring Aware Matrix Factorization for Single Cell RNA-Sequencing

genomics more details view paper
  • Downloaded 1,654 times
  • Download rankings, all-time:
    • Site-wide: 9,259
    • In genomics: 1,045
  • Year to date:
    • Site-wide: 42,901
  • Since beginning of last month:
    • Site-wide: 42,901

Selection Corrected Statistical Inference for Region Detection with High-throughput Assays

bioinformatics more details view paper
  • Downloaded 1,392 times
  • Download rankings, all-time:
    • Site-wide: 11,922
    • In bioinformatics: 1,475
  • Year to date:
    • Site-wide: 85,177
  • Since beginning of last month:
    • Site-wide: 85,177

Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation

genomics more details view paper
  • Downloaded 1,373 times
  • Download rankings, all-time:
    • Site-wide: 12,168
    • In genomics: 1,344
  • Year to date:
    • Site-wide: 51,723
  • Since beginning of last month:
    • Site-wide: 51,723

Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers

genomics more details view paper
  • Downloaded 1,091 times
  • Download rankings, all-time:
    • Site-wide: 17,221
    • In genomics: 1,792
  • Year to date:
    • Site-wide: 23,543
  • Since beginning of last month:
    • Site-wide: 23,543

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

developmental biology more details view paper
  • Downloaded 1,034 times
  • Download rankings, all-time:
    • Site-wide: 18,682
    • In developmental biology: 329
  • Year to date:
    • Site-wide: 39,343
  • Since beginning of last month:
    • Site-wide: 39,343

High-throughput identification of RNA nuclear enrichment sequences

genomics more details view paper
  • Downloaded 910 times
  • Download rankings, all-time:
    • Site-wide: 22,403
    • In genomics: 2,223
  • Year to date:
    • Site-wide: 63,103
  • Since beginning of last month:
    • Site-wide: 63,103

Correcting For Cell-Type Heterogeneity In Epigenome-Wide Association Studies: Premature Analyses And Conclusions

bioinformatics more details view paper
  • Downloaded 820 times
  • Download rankings, all-time:
    • Site-wide: 25,980
    • In bioinformatics: 3,071
  • Year to date:
    • Site-wide: 92,635
  • Since beginning of last month:
    • Site-wide: 92,635

Technology-independent estimation of cell type composition using differentially methylated regions

genomics more details view paper
  • Downloaded 553 times
  • Download rankings, all-time:
    • Site-wide: 43,892
    • In genomics: 3,594
  • Year to date:
    • Site-wide: 110,641
  • Since beginning of last month:
    • Site-wide: 110,641

Quantifying the Dynamics of Migration after a Disaster: Impact of Hurricane Maria in Puerto Rico

epidemiology more details view paper
  • Downloaded 318 times
  • Download rankings, all-time:
    • Site-wide: 76,761
    • In epidemiology: 3,156
  • Year to date:
    • Site-wide: 80,743
  • Since beginning of last month:
    • Site-wide: 80,743

Vaginal Microbiome Topic Modelling of Laboring Ugandan Women With and Without Fever

genomics more details view paper
  • Downloaded 103 times
  • Download rankings, all-time:
    • Site-wide: 120,209
    • In genomics: 6,559
  • Year to date:
    • Site-wide: 41,649
  • Since beginning of last month:
    • Site-wide: 41,649

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News