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Author: Rafael A. Irizarry

Rankings

  • All-time downloads: 51,744 (rank: 667 out of 364,857)
  • Categories:
    • bioinformatics: 2,044 (rank: 5,084 out of 31,503)
    • developmental biology: 811 (rank: 2,994 (tie) out of 14,071)
    • epidemiology: 1,691 (rank: 655 (tie) out of 9,547)
    • genomics: 45,169 (rank: 136 out of 39,301)
    • microbiology: 2,029 (rank: 3,229 (tie) out of 40,217)

Downloads per author, site-wide

Preprints

When to use Quantile Normalization?

genomics more details view paper
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    • Site-wide: 383 out of 84,802
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    • Site-wide: 657 out of 84,802

Missing Data and Technical Variability in Single-Cell RNA- Sequencing Experiments

genomics more details view paper
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    • In genomics: 45 out of 5,471
  • Year to date:
    • Site-wide: 6,462 out of 84,802
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    • Site-wide: 11,170 out of 84,802

Feature Selection and Dimension Reduction for Single Cell RNA-Seq based on a Multinomial Model

genomics more details view paper
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    • In genomics: 98 out of 5,471
  • Year to date:
    • Site-wide: 2,330 out of 84,802
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    • Site-wide: 3,868 out of 84,802

Meta Analysis Of Microbiome Studies Identifies Shared And Disease-Specific Patterns

microbiology more details view paper
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    • In microbiology: 195 out of 7,204
  • Year to date:
    • Site-wide: 15,334 out of 84,802
  • Since beginning of last month:
    • Site-wide: 11,427 out of 84,802

Probabilistic gene expression signatures identify cell-types from single cell RNA-seq data

genomics more details view paper
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    • Site-wide: 4,046 out of 84,802
    • In genomics: 711 out of 5,471
  • Year to date:
    • Site-wide: 456 out of 84,802
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    • Site-wide: 3,614 out of 84,802

Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing

genomics more details view paper
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    • Site-wide: 4,233 out of 84,802
    • In genomics: 729 out of 5,471
  • Year to date:
    • Site-wide: 19,030 out of 84,802
  • Since beginning of last month:
    • Site-wide: 20,172 out of 84,802

Post-Hurricane Vital Statistics Expose Fragility of Puerto Rico's Health System

epidemiology more details view paper
  • Downloaded 1,691 times
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    • In epidemiology: 36 out of 1,556
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    • Site-wide: 18,189 out of 84,802
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    • Site-wide: 36,080 out of 84,802

Varying-Censoring Aware Matrix Factorization for Single Cell RNA-Sequencing

genomics more details view paper
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    • In genomics: 861 out of 5,471
  • Year to date:
    • Site-wide: 52,247 out of 84,802
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    • Site-wide: 40,351 out of 84,802

Smooth Quantile Normalization

genomics more details view paper
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    • Site-wide: 5,153 out of 84,802
    • In genomics: 875 out of 5,471
  • Year to date:
    • Site-wide: 24,929 out of 84,802
  • Since beginning of last month:
    • Site-wide: 23,867 out of 84,802

Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-Seq data

genomics more details view paper
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    • Site-wide: 5,243 out of 84,802
    • In genomics: 890 out of 5,471
  • Year to date:
    • Site-wide: 51,506 out of 84,802
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    • Site-wide: 61,070 out of 84,802

Selection Corrected Statistical Inference for Region Detection with High-throughput Assays

bioinformatics more details view paper
  • Downloaded 1,277 times
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    • Site-wide: 7,220 out of 84,802
    • In bioinformatics: 1,284 out of 8,130
  • Year to date:
    • Site-wide: 43,912 out of 84,802
  • Since beginning of last month:
    • Site-wide: 58,183 out of 84,802

Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation

genomics more details view paper
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    • Site-wide: 7,638 out of 84,802
    • In genomics: 1,192 out of 5,471
  • Year to date:
    • Site-wide: 27,430 out of 84,802
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    • Site-wide: 18,408 out of 84,802

Robust decomposition of cell type mixtures in spatial transcriptomics

genomics more details view paper
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    • Site-wide: 13,985 out of 84,802
    • In genomics: 1,852 out of 5,471
  • Year to date:
    • Site-wide: 1,322 out of 84,802
  • Since beginning of last month:
    • Site-wide: 237 out of 84,802

High-throughput identification of RNA nuclear enrichment sequences

genomics more details view paper
  • Downloaded 836 times
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    • Site-wide: 14,258 out of 84,802
    • In genomics: 1,883 out of 5,471
  • Year to date:
    • Site-wide: 73,286 out of 84,802
  • Since beginning of last month:
    • Site-wide: 46,617 out of 84,802

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

developmental biology more details view paper
  • Downloaded 811 times
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    • Site-wide: 14,926 out of 84,802
    • In developmental biology: 344 out of 2,531
  • Year to date:
    • Site-wide: 15,698 out of 84,802
  • Since beginning of last month:
    • Site-wide: 17,246 out of 84,802

Correcting For Cell-Type Heterogeneity In Epigenome-Wide Association Studies: Premature Analyses And Conclusions

bioinformatics more details view paper
  • Downloaded 767 times
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    • Site-wide: 16,288 out of 84,802
    • In bioinformatics: 2,498 out of 8,130
  • Year to date:
    • Site-wide: 65,895 out of 84,802
  • Since beginning of last month:
    • Site-wide: 38,127 out of 84,802

Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers

genomics more details view paper
  • Downloaded 749 times
  • Download rankings, all-time:
    • Site-wide: 16,912 out of 84,802
    • In genomics: 2,113 out of 5,471
  • Year to date:
    • Site-wide: 5,077 out of 84,802
  • Since beginning of last month:
    • Site-wide: 12,779 out of 84,802

Technology-independent estimation of cell type composition using differentially methylated regions

genomics more details view paper
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    • Site-wide: 28,778 out of 84,802
    • In genomics: 2,969 out of 5,471
  • Year to date:
    • Site-wide: 77,743 out of 84,802
  • Since beginning of last month:
    • Site-wide: 71,943 out of 84,802

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