Author: Pierre Peterlongo

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Preprints

kmtricks: Efficient construction of Bloom filters for large sequencing data collections

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StrainFLAIR: Strain-level profiling of metagenomic samples using variation graphs

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Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

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Computational Pan-Genomics: Status, Promises and Challenges

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Clustering de Novo by Gene of Long Reads from Transcriptomics Data

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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

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DiscoSnp-RAD: de novo detection of small variants for population genomics

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DiscoSnp++: de novo detection of small variants from raw unassembled read set(s)

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SVJedi: Genotyping structural variations with long reads

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ELECTOR: Evaluator for long reads correction methods

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Toward perfect reads: short reads correction via mapping on compacted de Bruijn graphs

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Investigating Population-scale Allele Specific Expression in Wild Populations of Oithona similis (Cyclopoida, Claus 1866)

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A de novo approach to disentangle partner identity and function in holobiont systems

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metaVaR: introducing metavariant species models for reference-free metagenomic-based population genomics

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