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Author: Pierre Peterlongo

Rankings

  • All-time downloads: 19,344 (rank: 8,275 (tie) )
  • Categories:
    • bioinformatics: 12,544 (rank: 484 )
    • ecology: 1,379 (rank: 2,409 (tie) )
    • genomics: 5,421 (rank: 3,966 )

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Preprints

kmtricks: Efficient construction of Bloom filters for large sequencing data collections

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StrainFLAIR: Strain-level profiling of metagenomic samples using variation graphs

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Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

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  • Downloaded 6,967 times
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    • Site-wide: 1,179
    • In bioinformatics: 78
  • Year to date:
    • Site-wide: 39,478
  • Since beginning of last month:
    • Site-wide: 39,478

Computational Pan-Genomics: Status, Promises and Challenges

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  • Downloaded 4,599 times
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    • Site-wide: 2,083
    • In genomics: 225
  • Year to date:
    • Site-wide: 16,823
  • Since beginning of last month:
    • Site-wide: 16,823

Clustering de Novo by Gene of Long Reads from Transcriptomics Data

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  • Downloaded 1,954 times
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    • Site-wide: 7,129
    • In bioinformatics: 880
  • Year to date:
    • Site-wide: 43,997
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    • Site-wide: 43,997

Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

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  • Downloaded 1,379 times
  • Download rankings, all-time:
    • Site-wide: 12,055
    • In ecology: 177
  • Year to date:
    • Site-wide: 16,646
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    • Site-wide: 16,646

DiscoSnp-RAD: de novo detection of small variants for population genomics

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  • Downloaded 787 times
  • Download rankings, all-time:
    • Site-wide: 27,361
    • In bioinformatics: 3,187
  • Year to date:
    • Site-wide: 61,118
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    • Site-wide: 61,118

DiscoSnp++: de novo detection of small variants from raw unassembled read set(s)

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  • Downloaded 739 times
  • Download rankings, all-time:
    • Site-wide: 29,864
    • In bioinformatics: 3,427
  • Year to date:
    • Site-wide: 78,487
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    • Site-wide: 78,487

SVJedi: Genotyping structural variations with long reads

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  • Downloaded 651 times
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    • Site-wide: 35,492
    • In bioinformatics: 3,977
  • Year to date:
    • Site-wide: 40,090
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    • Site-wide: 40,090

ELECTOR: Evaluator for long reads correction methods

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  • Downloaded 613 times
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    • Site-wide: 38,390
    • In bioinformatics: 4,237
  • Year to date:
    • Site-wide: 81,380
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    • Site-wide: 81,380

Toward perfect reads: short reads correction via mapping on compacted de Bruijn graphs

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  • Downloaded 586 times
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    • Site-wide: 40,568
    • In bioinformatics: 4,425
  • Year to date:
    • Site-wide: 114,015
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    • Site-wide: 114,015

Investigating Population-scale Allele Specific Expression in Wild Populations of Oithona similis (Cyclopoida, Claus 1866)

genomics more details view paper
  • Downloaded 510 times
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    • Site-wide: 48,085
    • In genomics: 3,840
  • Year to date:
    • Site-wide: 60,071
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    • Site-wide: 60,071

A de novo approach to disentangle partner identity and function in holobiont systems

genomics more details view paper
  • Downloaded 312 times
  • Download rankings, all-time:
    • Site-wide: 77,511
    • In genomics: 5,171
  • Year to date:
    • Site-wide: 112,618
  • Since beginning of last month:
    • Site-wide: 112,618

metaVaR: introducing metavariant species models for reference-free metagenomic-based population genomics

bioinformatics more details view paper
  • Downloaded 247 times
  • Download rankings, all-time:
    • Site-wide: 90,980
    • In bioinformatics: 8,027
  • Year to date:
    • Site-wide: 94,311
  • Since beginning of last month:
    • Site-wide: 94,311

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