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Author: Alexander L. Greninger

Rankings

  • All-time downloads: 96,708 (rank: 1,139 )
  • Categories:
    • bioinformatics: 1,617 (rank: 8,243 (tie) )
    • epidemiology: 10,572 (rank: 1,070 )
    • genomics: 6,254 (rank: 3,219 (tie) )
    • infectious diseases: 37,269 (rank: 1,112 )
    • microbiology: 39,334 (rank: 259 )
    • pathology: 1,662 (rank: 614 (tie) )

Downloads per author, site-wide

Preprints

Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate

infectious diseases more details view paper
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    • Site-wide: 239
    • In infectious diseases: 93
  • Year to date:
    • Site-wide: 1,797
  • Since beginning of last month:
    • Site-wide: 784

DIRECT RT-qPCR DETECTION OF SARS-CoV-2 RNA FROM PATIENT NASOPHARYNGEAL SWABS WITHOUT AN RNA EXTRACTION STEP

microbiology more details view paper
  • Downloaded 20,082 times
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    • Site-wide: 303
    • In microbiology: 33
  • Year to date:
    • Site-wide: 1,769
  • Since beginning of last month:
    • Site-wide: 1,742

A human coronavirus evolves antigenically to escape antibody immunity

microbiology more details view paper
  • Downloaded 11,342 times
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    • Site-wide: 588
    • In microbiology: 61
  • Year to date:
    • Site-wide: 44
  • Since beginning of last month:
    • Site-wide: 19

Cryptic transmission of SARS-CoV-2 in Washington State

epidemiology more details view paper
  • Downloaded 9,056 times
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    • Site-wide: 791
    • In epidemiology: 106
  • Year to date:
    • Site-wide: 7,764
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    • Site-wide: 5,526

Point-of-care testing for COVID-19 using SHERLOCK diagnostics

infectious diseases more details view paper
  • Downloaded 8,334 times
  • Download rankings, all-time:
    • Site-wide: 893
    • In infectious diseases: 255
  • Year to date:
    • Site-wide: 1,567
  • Since beginning of last month:
    • Site-wide: 1,493

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

genomics more details view paper
  • Downloaded 3,190 times
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    • Site-wide: 3,352
    • In genomics: 394
  • Year to date:
    • Site-wide: 41,612
  • Since beginning of last month:
    • Site-wide: 46,755

In vivo antiviral host response to SARS-CoV-2 by viral load, sex, and age

microbiology more details view paper
  • Downloaded 1,753 times
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    • Site-wide: 8,001
    • In microbiology: 435
  • Year to date:
    • Site-wide: 2,729
  • Since beginning of last month:
    • Site-wide: 2,130

Comparison of Commercially Available and Laboratory Developed Assays for in vitro Detection of SARS-CoV-2 in Clinical Laboratories

pathology more details view paper
  • Downloaded 1,662 times
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    • Site-wide: 8,730
    • In pathology: 44
  • Year to date:
    • Site-wide: 25,149
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    • Site-wide: 24,800

Reliability of self-sampling for accurate assessment of respiratory virus viral and immunologic kinetics

infectious diseases more details view paper
  • Downloaded 1,616 times
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    • Site-wide: 9,124
    • In infectious diseases: 1,056
  • Year to date:
    • Site-wide: 24,177
  • Since beginning of last month:
    • Site-wide: 16,849

Validation and Implementation of CLIA-Compliant Whole Genome Sequencing (WGS) in Public Health Laboratory

microbiology more details view paper
  • Downloaded 1,268 times
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    • Site-wide: 13,077
    • In microbiology: 736
  • Year to date:
    • Site-wide: 73,545
  • Since beginning of last month:
    • Site-wide: 40,656

Discovery of a persistent Zika virus lineage in Bahia, Brazil

epidemiology more details view paper
  • Downloaded 1,161 times
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    • Site-wide: 14,910
    • In epidemiology: 913
  • Year to date:
    • Site-wide: 72,784
  • Since beginning of last month:
    • Site-wide: 66,681

Anti-SARS-CoV-2 IgG antibodies are associated with reduced viral load

infectious diseases more details view paper
  • Downloaded 1,034 times
  • Download rankings, all-time:
    • Site-wide: 17,780
    • In infectious diseases: 1,438
  • Year to date:
    • Site-wide: 24,300
  • Since beginning of last month:
    • Site-wide: 24,205

Retrospective Clinical Evaluation of Four Lateral Flow Assays for the Detection of SARS-CoV-2 Antibodies

infectious diseases more details view paper
  • Downloaded 926 times
  • Download rankings, all-time:
    • Site-wide: 20,870
    • In infectious diseases: 1,542
  • Year to date:
    • Site-wide: 5,022
  • Since beginning of last month:
    • Site-wide: 4,667

In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19

bioinformatics more details view paper
  • Downloaded 818 times
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    • Site-wide: 24,915
    • In bioinformatics: 3,002
  • Year to date:
    • Site-wide: 43,659
  • Since beginning of last month:
    • Site-wide: 19,681

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the critical need for reference strain sequencing

genomics more details view paper
  • Downloaded 789 times
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    • Site-wide: 26,206
    • In genomics: 2,492
  • Year to date:
    • Site-wide: 110,334
  • Since beginning of last month:
    • Site-wide: 70,246

SARS-CoV-2 ORF6 disrupts nucleocytoplasmic transport through interactions with Rae1 and Nup98

microbiology more details view paper
  • Downloaded 769 times
  • Download rankings, all-time:
    • Site-wide: 27,157
    • In microbiology: 1,589
  • Year to date:
    • Site-wide: 11,904
  • Since beginning of last month:
    • Site-wide: 12,143

Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations of Shigella sonnei With Increased Virulence or Fluoroquinolone Resistance

microbiology more details view paper
  • Downloaded 605 times
  • Download rankings, all-time:
    • Site-wide: 37,512
    • In microbiology: 2,277
  • Year to date:
    • Site-wide: 57,927
  • Since beginning of last month:
    • Site-wide: 61,789

Standard Issue: Copy number heterogeneity of JC virus standards discovered through next-generation sequencing

microbiology more details view paper
  • Downloaded 597 times
  • Download rankings, all-time:
    • Site-wide: 38,070
    • In microbiology: 2,322
  • Year to date:
    • Site-wide: 59,984
  • Since beginning of last month:
    • Site-wide: 80,331

VAPiD: a lightweight cross platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank

bioinformatics more details view paper
  • Downloaded 557 times
  • Download rankings, all-time:
    • Site-wide: 41,585
    • In bioinformatics: 4,524
  • Year to date:
    • Site-wide: 50,225
  • Since beginning of last month:
    • Site-wide: 81,761

Genomic and proteomic analysis of Human herpesvirus 6 reveals distinct clustering of acute versus inherited forms and reannotation of reference strain

microbiology more details view paper
  • Downloaded 493 times
  • Download rankings, all-time:
    • Site-wide: 48,099
    • In microbiology: 3,062
  • Year to date:
    • Site-wide: 61,864
  • Since beginning of last month:
    • Site-wide: 59,180

Myeloablation-associated deletion of ORF4 in a human coronavirus 229E infection

genomics more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 50,036
    • In genomics: 3,951
  • Year to date:
    • Site-wide: 52,510
  • Since beginning of last month:
    • Site-wide: 44,065

A novel qacA allele results in an elevated chlorhexidine gluconate minimum inhibitory concentration in cutaneous Staphylococcus epidermidis isolates

microbiology more details view paper
  • Downloaded 455 times
  • Download rankings, all-time:
    • Site-wide: 52,676
    • In microbiology: 3,424
  • Year to date:
    • Site-wide: 107,999
  • Since beginning of last month:
    • Site-wide: 48,976

Pre-Procedural Surveillance Testing for SARS-CoV-2 in an Asymptomatic Population Shows Low Rates of Positivity

infectious diseases more details view paper
  • Downloaded 450 times
  • Download rankings, all-time:
    • Site-wide: 53,288
    • In infectious diseases: 2,431
  • Year to date:
    • Site-wide: 75,657
  • Since beginning of last month:
    • Site-wide: 116,069

The impact of interspecies recombination on human herpes simplex virus evolution and host immune recognition

genomics more details view paper
  • Downloaded 430 times
  • Download rankings, all-time:
    • Site-wide: 55,945
    • In genomics: 4,249
  • Year to date:
    • Site-wide: 29,500
  • Since beginning of last month:
    • Site-wide: 81,437

Rapid metagenomic next-generation sequencing during an investigation of hospital-acquired human parainfluenza virus 3 infections

microbiology more details view paper
  • Downloaded 369 times
  • Download rankings, all-time:
    • Site-wide: 65,149
    • In microbiology: 4,400
  • Year to date:
    • Site-wide: 92,172
  • Since beginning of last month:
    • Site-wide: 85,646

Cooperating H3N2 influenza virus variants are not detectable in primary clinical samples

microbiology more details view paper
  • Downloaded 362 times
  • Download rankings, all-time:
    • Site-wide: 66,186
    • In microbiology: 4,499
  • Year to date:
    • Site-wide: 82,671
  • Since beginning of last month:
    • Site-wide: 93,257

Limited marginal utility of deep sequencing for HIV drug resistance testing in the age of integrase inhibitors

epidemiology more details view paper
  • Downloaded 355 times
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    • Site-wide: 67,334
    • In epidemiology: 2,763
  • Year to date:
    • Site-wide: 94,370
  • Since beginning of last month:
    • Site-wide: 98,300

Ultrasensitive capture of human herpes simplex virus genomes directly from clinical samples reveals extraordinarily limited evolution in cell culture

genomics more details view paper
  • Downloaded 355 times
  • Download rankings, all-time:
    • Site-wide: 67,359
    • In genomics: 4,758
  • Year to date:
    • Site-wide: 80,016
  • Since beginning of last month:
    • Site-wide: 101,494

Divergent In vitro MIC Characteristics and underlying isogenic mutations in host-specialized Pseudomonas aeruginosa

microbiology more details view paper
  • Downloaded 299 times
  • Download rankings, all-time:
    • Site-wide: 77,395
    • In microbiology: 5,432
  • Year to date:
    • Site-wide: 34,760
  • Since beginning of last month:
    • Site-wide: 97,699

Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains

genomics more details view paper
  • Downloaded 295 times
  • Download rankings, all-time:
    • Site-wide: 78,167
    • In genomics: 5,188
  • Year to date:
    • Site-wide: 111,002
  • Since beginning of last month:
    • Site-wide: 50,826

Inactivation of genes in oxidative respiration and iron acquisition pathways in pediatric clinical isolates of small-colony variant Enterobactericeae

microbiology more details view paper
  • Downloaded 251 times
  • Download rankings, all-time:
    • Site-wide: 87,203
    • In microbiology: 6,298
  • Year to date:
    • Site-wide: 58,208
  • Since beginning of last month:
    • Site-wide: 50,519

LAVA: a streamlined visualization tool for longitudinal analysis of viral alleles

bioinformatics more details view paper
  • Downloaded 242 times
  • Download rankings, all-time:
    • Site-wide: 89,149
    • In bioinformatics: 7,910
  • Year to date:
    • Site-wide: 102,365
  • Since beginning of last month:
    • Site-wide: 84,436

Estimation of Full-Length TprK Diversity in Treponema pallidum subspecies pallidum

microbiology more details view paper
  • Downloaded 230 times
  • Download rankings, all-time:
    • Site-wide: 91,722
    • In microbiology: 6,667
  • Year to date:
    • Site-wide: 53,547
  • Since beginning of last month:
    • Site-wide: 67,264

Sensitive detection of highly fragmented cytomegalovirus nucleic acid in human cfDNA

microbiology more details view paper
  • Downloaded 227 times
  • Download rankings, all-time:
    • Site-wide: 92,264
    • In microbiology: 6,736
  • Year to date:
    • Site-wide: 99,033
  • Since beginning of last month:
    • Site-wide: 92,212

Prospective real-time metagenomic sequencing during norovirus outbreak reveals discrete transmission clusters

genomics more details view paper
  • Downloaded 225 times
  • Download rankings, all-time:
    • Site-wide: 92,849
    • In genomics: 5,705
  • Year to date:
    • Site-wide: 103,745
  • Since beginning of last month:
    • Site-wide: 119,728

Inherited chromosomally integrated HHV-6 demonstrates tissue-specific RNA expression in vivo that correlates with increased antibody immune response.

genomics more details view paper
  • Downloaded 218 times
  • Download rankings, all-time:
    • Site-wide: 94,159
    • In genomics: 5,744
  • Year to date:
    • Site-wide: 116,451
  • Since beginning of last month:
    • Site-wide: 113,373

Comparative Genomics and Full-Length TprK Profiling of Treponema pallidum subsp. pallidum Reinfection

microbiology more details view paper
  • Downloaded 176 times
  • Download rankings, all-time:
    • Site-wide: 103,084
    • In microbiology: 7,745
  • Year to date:
    • Site-wide: 109,322
  • Since beginning of last month:
    • Site-wide: 110,196

Phenotypic and Genotypic Antiviral Resistance Testing of HSV-1 Causing Recurrent Cutaneous Lesions in a Patient with DOCK8 Deficiency

genomics more details view paper
  • Downloaded 148 times
  • Download rankings, all-time:
    • Site-wide: 108,430
    • In genomics: 6,192
  • Year to date:
    • Site-wide: 104,895
  • Since beginning of last month:
    • Site-wide: 76,099

Herpes Simplex Virus Mistyping due to HSV-1 x HSV-2 Interspecies Recombination in Viral Gene Encoding Glycoprotein B

genomics more details view paper
  • Downloaded 127 times
  • Download rankings, all-time:
    • Site-wide: 112,267
    • In genomics: 6,308
  • Year to date:
    • Site-wide: 104,232
  • Since beginning of last month:
    • Site-wide: 115,969

Rapid adaptation to human protein kinase R by a unique genomic rearrangement in rhesus cytomegalovirus.

microbiology more details view paper
  • Downloaded 56 times
  • Download rankings, all-time:
    • Site-wide: 122,821
    • In microbiology: 9,641
  • Year to date:
    • Site-wide: 98,138
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    • Site-wide: 49,470

Liver immune abnormalities persist after cure of Hepatitis C Virus by anti-viral therapy

infectious diseases more details view paper
  • Downloaded 38 times
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    • Site-wide: 123,578
    • In infectious diseases: 3,934
  • Year to date:
    • Site-wide: 43,125
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    • Site-wide: 25,902

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