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Author: Sohrab P. Shah

Rankings

  • All-time downloads: 24,658 (rank: 1,801 out of 362,529)
  • Categories:
    • bioinformatics: 9,507 (rank: 580 out of 31,341)
    • cancer biology: 5,263 (rank: 276 (tie) out of 24,639)
    • genomics: 9,888 (rank: 1,415 out of 39,124)

Downloads per author, site-wide

Preprints

Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires

genomics more details view paper
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Probabilistic cell type assignment of single-cell transcriptomic data reveals spatiotemporal microenvironment dynamics in human cancers

bioinformatics more details view paper
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    • In bioinformatics: 174 out of 8,071
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    • Site-wide: 4,436 out of 84,201

Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase associated stress responses

genomics more details view paper
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    • Site-wide: 1,069 out of 84,201
    • In genomics: 238 out of 5,431
  • Year to date:
    • Site-wide: 22,691 out of 84,201
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    • Site-wide: 32,053 out of 84,201

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models

bioinformatics more details view paper
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    • Site-wide: 3,861 out of 84,201
    • In bioinformatics: 718 out of 8,071
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    • Site-wide: 40,889 out of 84,201
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    • Site-wide: 34,542 out of 84,201

clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers

bioinformatics more details view paper
  • Downloaded 1,705 times
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    • Site-wide: 4,421 out of 84,201
    • In bioinformatics: 830 out of 8,071
  • Year to date:
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    • Site-wide: 40,129 out of 84,201

The interface of malignant and immunologic clonal dynamics in high-grade serous ovarian cancer

cancer biology more details view paper
  • Downloaded 1,510 times
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    • Site-wide: 5,413 out of 84,201
    • In cancer biology: 135 out of 2,944
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    • Site-wide: 78,192 out of 84,201

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
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    • Site-wide: 6,461 out of 84,201
    • In cancer biology: 173 out of 2,944
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    • Site-wide: 42,044 out of 84,201
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    • Site-wide: 41,688 out of 84,201

Kronos: a workflow assembler for genome analytics and informatics

bioinformatics more details view paper
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    • Site-wide: 6,985 out of 84,201
    • In bioinformatics: 1,248 out of 8,071
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    • Site-wide: 54,962 out of 84,201
  • Since beginning of last month:
    • Site-wide: 58,472 out of 84,201

Epiclomal: probabilistic clustering of sparse single-cell DNA methylation data

genomics more details view paper
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    • Site-wide: 10,411 out of 84,201
    • In genomics: 1,507 out of 5,431
  • Year to date:
    • Site-wide: 11,342 out of 84,201
  • Since beginning of last month:
    • Site-wide: 17,387 out of 84,201

E-scape: Interactive visualization of single cell phylogenetics and spatio-temporal evolution in cancer

cancer biology more details view paper
  • Downloaded 981 times
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    • Site-wide: 11,050 out of 84,201
    • In cancer biology: 325 out of 2,944
  • Year to date:
    • Site-wide: 42,635 out of 84,201
  • Since beginning of last month:
    • Site-wide: 33,054 out of 84,201

Single cell fitness landscapes induced by genetic and pharmacologic perturbations in cancer

cancer biology more details view paper
  • Downloaded 728 times
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    • Site-wide: 17,460 out of 84,201
    • In cancer biology: 520 out of 2,944
  • Year to date:
    • Site-wide: 1,571 out of 84,201
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    • Site-wide: 671 out of 84,201

Non-coding Somatic Mutations Converge on the PAX8 Pathway in Epithelial Ovarian Cancer

cancer biology more details view paper
  • Downloaded 686 times
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    • Site-wide: 19,043 out of 84,201
    • In cancer biology: 571 out of 2,944
  • Year to date:
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    • Site-wide: 26,700 out of 84,201

MuClone: Somatic mutation detection and classification through probabilistic integration of clonal population structure

bioinformatics more details view paper
  • Downloaded 560 times
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    • Site-wide: 25,404 out of 84,201
    • In bioinformatics: 3,502 out of 8,071
  • Year to date:
    • Site-wide: 72,579 out of 84,201
  • Since beginning of last month:
    • Site-wide: 81,329 out of 84,201

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 471 times
  • Download rankings, all-time:
    • Site-wide: 31,477 out of 84,201
    • In genomics: 3,156 out of 5,431
  • Year to date:
    • Site-wide: 74,038 out of 84,201
  • Since beginning of last month:
    • Site-wide: 74,081 out of 84,201

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