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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,736 bioRxiv papers from 278,376 authors.

Author: Sohrab P Shah

Rankings

  • All-time downloads: 19,828 (rank: 1,248 out of 278,376)
  • Categories:
    • bioinformatics: 8,371 (rank: 391 out of 24,403)
    • cancer biology: 4,061 (rank: 282 out of 17,227)
    • genomics: 7,396 (rank: 1,485 out of 31,951)

Downloads per author, site-wide

Preprints

Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires

genomics more details view paper
  • Downloaded 3,694 times
  • Download rankings, all-time:
    • Site-wide: 734 out of 62,736
    • In genomics: 188 out of 4,316
  • Year to date:
    • Site-wide: 502 out of 62,736
  • Since beginning of last month:
    • Site-wide: 1,033 out of 62,736

Probabilistic cell type assignment of single-cell transcriptomic data reveals spatiotemporal microenvironment dynamics in human cancers

bioinformatics more details view paper
  • Downloaded 3,303 times
  • Download rankings, all-time:
    • Site-wide: 898 out of 62,736
    • In bioinformatics: 177 out of 6,251
  • Year to date:
    • Site-wide: 147 out of 62,736
  • Since beginning of last month:
    • Site-wide: 544 out of 62,736

Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase associated stress responses

genomics more details view paper
  • Downloaded 3,287 times
  • Download rankings, all-time:
    • Site-wide: 907 out of 62,736
    • In genomics: 231 out of 4,316
  • Year to date:
    • Site-wide: 151 out of 62,736
  • Since beginning of last month:
    • Site-wide: 1,257 out of 62,736

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models

bioinformatics more details view paper
  • Downloaded 1,739 times
  • Download rankings, all-time:
    • Site-wide: 2,839 out of 62,736
    • In bioinformatics: 575 out of 6,251
  • Year to date:
    • Site-wide: 32,444 out of 62,736
  • Since beginning of last month:
    • Site-wide: 57,523 out of 62,736

clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers

bioinformatics more details view paper
  • Downloaded 1,602 times
  • Download rankings, all-time:
    • Site-wide: 3,249 out of 62,736
    • In bioinformatics: 657 out of 6,251
  • Year to date:
    • Site-wide: 4,771 out of 62,736
  • Since beginning of last month:
    • Site-wide: 50,129 out of 62,736

The interface of malignant and immunologic clonal dynamics in high-grade serous ovarian cancer

cancer biology more details view paper
  • Downloaded 1,465 times
  • Download rankings, all-time:
    • Site-wide: 3,791 out of 62,736
    • In cancer biology: 95 out of 2,061
  • Year to date:
    • Site-wide: 40,025 out of 62,736
  • Since beginning of last month:
    • Site-wide: 56,704 out of 62,736

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
  • Downloaded 1,239 times
  • Download rankings, all-time:
    • Site-wide: 4,965 out of 62,736
    • In cancer biology: 129 out of 2,061
  • Year to date:
    • Site-wide: 13,305 out of 62,736
  • Since beginning of last month:
    • Site-wide: 23,116 out of 62,736

Kronos: a workflow assembler for genome analytics and informatics

bioinformatics more details view paper
  • Downloaded 1,224 times
  • Download rankings, all-time:
    • Site-wide: 5,065 out of 62,736
    • In bioinformatics: 987 out of 6,251
  • Year to date:
    • Site-wide: 42,462 out of 62,736
  • Since beginning of last month:
    • Site-wide: 50,401 out of 62,736

E-scape: Interactive visualization of single cell phylogenetics and spatio-temporal evolution in cancer

cancer biology more details view paper
  • Downloaded 864 times
  • Download rankings, all-time:
    • Site-wide: 8,933 out of 62,736
    • In cancer biology: 249 out of 2,061
  • Year to date:
    • Site-wide: 29,049 out of 62,736
  • Since beginning of last month:
    • Site-wide: 31,500 out of 62,736

MuClone: Somatic mutation detection and classification through probabilistic integration of clonal population structure

bioinformatics more details view paper
  • Downloaded 503 times
  • Download rankings, all-time:
    • Site-wide: 19,053 out of 62,736
    • In bioinformatics: 2,836 out of 6,251
  • Year to date:
    • Site-wide: 34,281 out of 62,736
  • Since beginning of last month:
    • Site-wide: 40,014 out of 62,736

Non-coding Somatic Mutations Converge on the PAX8 Pathway in Epithelial Ovarian Cancer

cancer biology more details view paper
  • Downloaded 493 times
  • Download rankings, all-time:
    • Site-wide: 19,572 out of 62,736
    • In cancer biology: 591 out of 2,061
  • Year to date:
    • Site-wide: 5,027 out of 62,736
  • Since beginning of last month:
    • Site-wide: 9,366 out of 62,736

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 415 times
  • Download rankings, all-time:
    • Site-wide: 23,888 out of 62,736
    • In genomics: 2,571 out of 4,316
  • Year to date:
    • Site-wide: 54,693 out of 62,736
  • Since beginning of last month:
    • Site-wide: 55,760 out of 62,736

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