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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,170 bioRxiv papers from 306,408 authors.

Author: Xiaohui Xie

  • Most recently observed institution: Department of Computer Science, University of California

Rankings

  • All-time downloads: 22,729 (rank: 1,154 out of 306,432)
  • Categories:
    • bioengineering: 1,682 (rank: 564 (tie) out of 7,869)
    • bioinformatics: 12,385 (rank: 236 out of 26,716)
    • developmental biology: 506 (rank: 3,999 (tie) out of 11,747)
    • genomics: 6,722 (rank: 1,912 (tie) out of 34,685)
    • synthetic biology: 1,434 (rank: 532 (tie) out of 3,070)

Downloads per author, site-wide

Preprints

Predicting transcription factor binding in single cells through deep learning

bioinformatics more details view paper

No bioRxiv download data for this paper yet.

Gene expression inference with deep learning

bioinformatics more details view paper
  • Downloaded 5,602 times
  • Download rankings, all-time:
    • Site-wide: 369 out of 70,177
    • In bioinformatics: 70 out of 6,878
  • Year to date:
    • Site-wide: 16,887 out of 70,177
  • Since beginning of last month:
    • Site-wide: 11,447 out of 70,177

DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences

genomics more details view paper
  • Downloaded 3,447 times
  • Download rankings, all-time:
    • Site-wide: 955 out of 70,177
    • In genomics: 242 out of 4,698
  • Year to date:
    • Site-wide: 19,087 out of 70,177
  • Since beginning of last month:
    • Site-wide: 29,827 out of 70,177

FactorNet: a deep learning framework for predicting cell type specific transcription factor binding from nucleotide-resolution sequential data

genomics more details view paper
  • Downloaded 3,275 times
  • Download rankings, all-time:
    • Site-wide: 1,035 out of 70,177
    • In genomics: 255 out of 4,698
  • Year to date:
    • Site-wide: 11,289 out of 70,177
  • Since beginning of last month:
    • Site-wide: 6,363 out of 70,177

Understanding sequence conservation with deep learning

bioinformatics more details view paper
  • Downloaded 2,553 times
  • Download rankings, all-time:
    • Site-wide: 1,637 out of 70,177
    • In bioinformatics: 327 out of 6,878
  • Year to date:
    • Site-wide: 20,872 out of 70,177
  • Since beginning of last month:
    • Site-wide: 22,953 out of 70,177

AnatomyNet: Deep 3D Squeeze-and-excitation U-Nets for fast and fully automated whole-volume anatomical segmentation

bioengineering more details view paper
  • Downloaded 1,571 times
  • Download rankings, all-time:
    • Site-wide: 3,844 out of 70,177
    • In bioengineering: 66 out of 1,429
  • Year to date:
    • Site-wide: 27,358 out of 70,177
  • Since beginning of last month:
    • Site-wide: 4,399 out of 70,177

DNA writing at a single genomic site enables lineage tracing and analog recording in mammalian cells

synthetic biology more details view paper
  • Downloaded 1,434 times
  • Download rankings, all-time:
    • Site-wide: 4,501 out of 70,177
    • In synthetic biology: 68 out of 666
  • Year to date:
    • Site-wide: 21,006 out of 70,177
  • Since beginning of last month:
    • Site-wide: 2,453 out of 70,177

HLA class I binding prediction via convolutional neural networks

bioinformatics more details view paper
  • Downloaded 1,047 times
  • Download rankings, all-time:
    • Site-wide: 7,551 out of 70,177
    • In bioinformatics: 1,343 out of 6,878
  • Year to date:
    • Site-wide: 13,409 out of 70,177
  • Since beginning of last month:
    • Site-wide: 50,098 out of 70,177

DeepLung: 3D Deep Convolutional Nets for Automated Pulmonary Nodule Detection and Classification

bioinformatics more details view paper
  • Downloaded 1,013 times
  • Download rankings, all-time:
    • Site-wide: 7,994 out of 70,177
    • In bioinformatics: 1,413 out of 6,878
  • Year to date:
    • Site-wide: 29,857 out of 70,177
  • Since beginning of last month:
    • Site-wide: 31,121 out of 70,177

Deep Multi-instance Networks with Sparse Label Assignment for Whole Mammogram Classification

bioinformatics more details view paper
  • Downloaded 877 times
  • Download rankings, all-time:
    • Site-wide: 10,079 out of 70,177
    • In bioinformatics: 1,733 out of 6,878
  • Year to date:
    • Site-wide: 63,648 out of 70,177
  • Since beginning of last month:
    • Site-wide: 47,071 out of 70,177

Adversarial Deep Structural Networks for Mammographic Mass Segmentation

bioinformatics more details view paper
  • Downloaded 638 times
  • Download rankings, all-time:
    • Site-wide: 16,135 out of 70,177
    • In bioinformatics: 2,491 out of 6,878
  • Year to date:
    • Site-wide: 38,316 out of 70,177
  • Since beginning of last month:
    • Site-wide: 57,123 out of 70,177

The Effect Of Nipped-B-Like (Nipbl) Haploinsufficiency On Genome-Wide Cohesin Binding And Target Gene Expression: Modeling Cornelia de Lange Syndrome

developmental biology more details view paper
  • Downloaded 506 times
  • Download rankings, all-time:
    • Site-wide: 22,042 out of 70,177
    • In developmental biology: 571 out of 2,098
  • Year to date:
    • Site-wide: None out of 70,177
  • Since beginning of last month:
    • Site-wide: 30,744 out of 70,177

Parallelized Inference for Single Cell Transcriptomic Clustering with Split Merge Sampling on DPMM Model

bioinformatics more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 31,837 out of 70,177
    • In bioinformatics: 4,070 out of 6,878
  • Year to date:
    • Site-wide: 34,589 out of 70,177
  • Since beginning of last month:
    • Site-wide: 65,302 out of 70,177

DeepEM: Deep 3D ConvNets With EM For Weakly Supervised Pulmonary Nodule Detection

bioinformatics more details view paper
  • Downloaded 289 times
  • Download rankings, all-time:
    • Site-wide: 39,582 out of 70,177
    • In bioinformatics: 4,749 out of 6,878
  • Year to date:
    • Site-wide: 64,220 out of 70,177
  • Since beginning of last month:
    • Site-wide: 51,987 out of 70,177

Neural Multi-Scale Self-Supervised Registration for Echocardiogram Dense Tracking

bioengineering more details view paper
  • Downloaded 111 times
  • Download rankings, all-time:
    • Site-wide: 63,919 out of 70,177
    • In bioengineering: 1,246 out of 1,429
  • Year to date:
    • Site-wide: 64,581 out of 70,177
  • Since beginning of last month:
    • Site-wide: 45,449 out of 70,177

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