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Author: Rob Patro

Rankings

  • All-time downloads: 24,648 (rank: 1,807 out of 361,795)
  • Categories:
    • bioinformatics: 24,648 (rank: 89 out of 31,317)

Downloads per author, site-wide

Preprints

RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

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  • Downloaded 12,657 times
  • Download rankings, all-time:
    • Site-wide: 143 out of 84,032
    • In bioinformatics: 19 out of 8,053
  • Year to date:
    • Site-wide: 557 out of 84,032
  • Since beginning of last month:
    • Site-wide: 1,438 out of 84,032

Alignment and mapping methodology influence transcript abundance estimation

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  • Downloaded 3,895 times
  • Download rankings, all-time:
    • Site-wide: 1,080 out of 84,032
    • In bioinformatics: 187 out of 8,053
  • Year to date:
    • Site-wide: 738 out of 84,032
  • Since beginning of last month:
    • Site-wide: 1,028 out of 84,032

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

bioinformatics more details view paper
  • Downloaded 2,478 times
  • Download rankings, all-time:
    • Site-wide: 2,367 out of 84,032
    • In bioinformatics: 442 out of 8,053
  • Year to date:
    • Site-wide: 14,299 out of 84,032
  • Since beginning of last month:
    • Site-wide: 14,599 out of 84,032

Nonparametric expression analysis using inferential replicate counts

bioinformatics more details view paper
  • Downloaded 1,404 times
  • Download rankings, all-time:
    • Site-wide: 6,084 out of 84,032
    • In bioinformatics: 1,096 out of 8,053
  • Year to date:
    • Site-wide: 11,808 out of 84,032
  • Since beginning of last month:
    • Site-wide: 13,865 out of 84,032

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data

bioinformatics more details view paper
  • Downloaded 1,150 times
  • Download rankings, all-time:
    • Site-wide: 8,514 out of 84,032
    • In bioinformatics: 1,447 out of 8,053
  • Year to date:
    • Site-wide: 801 out of 84,032
  • Since beginning of last month:
    • Site-wide: 830 out of 84,032

Rich chromatin structure prediction from Hi-C data

bioinformatics more details view paper
  • Downloaded 935 times
  • Download rankings, all-time:
    • Site-wide: 11,889 out of 84,032
    • In bioinformatics: 1,929 out of 8,053
  • Year to date:
    • Site-wide: 64,715 out of 84,032
  • Since beginning of last month:
    • Site-wide: 46,149 out of 84,032

An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

bioinformatics more details view paper
  • Downloaded 796 times
  • Download rankings, all-time:
    • Site-wide: 15,205 out of 84,032
    • In bioinformatics: 2,365 out of 8,053
  • Year to date:
    • Site-wide: 31,907 out of 84,032
  • Since beginning of last month:
    • Site-wide: 27,913 out of 84,032

Tximeta: reference sequence checksums for provenance identification in RNA-seq

bioinformatics more details view paper
  • Downloaded 576 times
  • Download rankings, all-time:
    • Site-wide: 24,467 out of 84,032
    • In bioinformatics: 3,400 out of 8,053
  • Year to date:
    • Site-wide: 9,368 out of 84,032
  • Since beginning of last month:
    • Site-wide: 11,842 out of 84,032

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

bioinformatics more details view paper
  • Downloaded 512 times
  • Download rankings, all-time:
    • Site-wide: 28,347 out of 84,032
    • In bioinformatics: 3,783 out of 8,053
  • Year to date:
    • Site-wide: 2,607 out of 84,032
  • Since beginning of last month:
    • Site-wide: 974 out of 84,032

A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification

bioinformatics more details view paper
  • Downloaded 245 times
  • Download rankings, all-time:
    • Site-wide: 57,851 out of 84,032
    • In bioinformatics: 6,241 out of 8,053
  • Year to date:
    • Site-wide: 8,289 out of 84,032
  • Since beginning of last month:
    • Site-wide: 2,387 out of 84,032

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