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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,745 bioRxiv papers from 278,406 authors.

Author: Rob Patro

Rankings

  • All-time downloads: 51,777 (rank: 252 out of 278,406)
  • Categories:
    • bioinformatics: 49,626 (rank: 40 out of 24,403)
    • genetics: 2,151 (rank: 5,658 (tie) out of 27,721)

Downloads per author, site-wide

Preprints

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 18,706 times
  • Download rankings, all-time:
    • Site-wide: 33 out of 62,745
    • In bioinformatics: 3 out of 6,251
  • Year to date:
    • Site-wide: 224 out of 62,745
  • Since beginning of last month:
    • Site-wide: 190 out of 62,745

RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

bioinformatics more details view paper
  • Downloaded 10,371 times
  • Download rankings, all-time:
    • Site-wide: 98 out of 62,745
    • In bioinformatics: 18 out of 6,251
  • Year to date:
    • Site-wide: 379 out of 62,745
  • Since beginning of last month:
    • Site-wide: 262 out of 62,745

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 4,569 times
  • Download rankings, all-time:
    • Site-wide: 475 out of 62,745
    • In bioinformatics: 95 out of 6,251
  • Year to date:
    • Site-wide: 2,580 out of 62,745
  • Since beginning of last month:
    • Site-wide: 6,028 out of 62,745

Mantis: A Fast, Small, and Exact Large-Scale Sequence Search Index

bioinformatics more details view paper
  • Downloaded 2,373 times
  • Download rankings, all-time:
    • Site-wide: 1,648 out of 62,745
    • In bioinformatics: 331 out of 6,251
  • Year to date:
    • Site-wide: 6,024 out of 62,745
  • Since beginning of last month:
    • Site-wide: 16,648 out of 62,745

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

bioinformatics more details view paper
  • Downloaded 2,205 times
  • Download rankings, all-time:
    • Site-wide: 1,865 out of 62,745
    • In bioinformatics: 382 out of 6,251
  • Year to date:
    • Site-wide: 1,538 out of 62,745
  • Since beginning of last month:
    • Site-wide: 4,349 out of 62,745

Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data

genetics more details view paper
  • Downloaded 2,151 times
  • Download rankings, all-time:
    • Site-wide: 1,962 out of 62,745
    • In genetics: 189 out of 3,562
  • Year to date:
    • Site-wide: 10,380 out of 62,745
  • Since beginning of last month:
    • Site-wide: 13,778 out of 62,745

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 1,564 times
  • Download rankings, all-time:
    • Site-wide: 3,382 out of 62,745
    • In bioinformatics: 682 out of 6,251
  • Year to date:
    • Site-wide: 640 out of 62,745
  • Since beginning of last month:
    • Site-wide: 889 out of 62,745

Squeakr: An Exact and Approximate k-mer Counting System

bioinformatics more details view paper
  • Downloaded 1,486 times
  • Download rankings, all-time:
    • Site-wide: 3,690 out of 62,745
    • In bioinformatics: 742 out of 6,251
  • Year to date:
    • Site-wide: 18,084 out of 62,745
  • Since beginning of last month:
    • Site-wide: 32,003 out of 62,745

Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification

bioinformatics more details view paper
  • Downloaded 1,164 times
  • Download rankings, all-time:
    • Site-wide: 5,515 out of 62,745
    • In bioinformatics: 1,068 out of 6,251
  • Year to date:
    • Site-wide: 18,617 out of 62,745
  • Since beginning of last month:
    • Site-wide: 40,204 out of 62,745

Nonparametric expression analysis using inferential replicate counts

bioinformatics more details view paper
  • Downloaded 1,100 times
  • Download rankings, all-time:
    • Site-wide: 6,071 out of 62,745
    • In bioinformatics: 1,144 out of 6,251
  • Year to date:
    • Site-wide: 1,250 out of 62,745
  • Since beginning of last month:
    • Site-wide: 4,512 out of 62,745

Rainbowfish: A Succinct Colored de Bruijn Graph Representation

bioinformatics more details view paper
  • Downloaded 1,050 times
  • Download rankings, all-time:
    • Site-wide: 6,552 out of 62,745
    • In bioinformatics: 1,214 out of 6,251
  • Year to date:
    • Site-wide: 45,816 out of 62,745
  • Since beginning of last month:
    • Site-wide: 45,659 out of 62,745

Graph regularized, semi-supervised learning improves annotation of de novo transcriptomes

bioinformatics more details view paper
  • Downloaded 885 times
  • Download rankings, all-time:
    • Site-wide: 8,605 out of 62,745
    • In bioinformatics: 1,516 out of 6,251
  • Year to date:
    • Site-wide: 52,797 out of 62,745
  • Since beginning of last month:
    • Site-wide: 51,188 out of 62,745

Rich chromatin structure prediction from Hi-C data

bioinformatics more details view paper
  • Downloaded 871 times
  • Download rankings, all-time:
    • Site-wide: 8,821 out of 62,745
    • In bioinformatics: 1,546 out of 6,251
  • Year to date:
    • Site-wide: 45,673 out of 62,745
  • Since beginning of last month:
    • Site-wide: 44,861 out of 62,745

A space and time-efficient index for the compacted colored de Bruijn graph

bioinformatics more details view paper
  • Downloaded 809 times
  • Download rankings, all-time:
    • Site-wide: 9,893 out of 62,745
    • In bioinformatics: 1,709 out of 6,251
  • Year to date:
    • Site-wide: 32,049 out of 62,745
  • Since beginning of last month:
    • Site-wide: 43,923 out of 62,745

Compression of short-read sequences using path encoding

bioinformatics more details view paper
  • Downloaded 632 times
  • Download rankings, all-time:
    • Site-wide: 14,052 out of 62,745
    • In bioinformatics: 2,257 out of 6,251
  • Year to date:
    • Site-wide: 58,214 out of 62,745
  • Since beginning of last month:
    • Site-wide: 52,953 out of 62,745

An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

bioinformatics more details view paper
  • Downloaded 589 times
  • Download rankings, all-time:
    • Site-wide: 15,515 out of 62,745
    • In bioinformatics: 2,442 out of 6,251
  • Year to date:
    • Site-wide: 11,613 out of 62,745
  • Since beginning of last month:
    • Site-wide: 10,607 out of 62,745

Quark enables semi-reference-based compression of RNA-seq data

bioinformatics more details view paper
  • Downloaded 569 times
  • Download rankings, all-time:
    • Site-wide: 16,226 out of 62,745
    • In bioinformatics: 2,527 out of 6,251
  • Year to date:
    • Site-wide: 57,608 out of 62,745
  • Since beginning of last month:
    • Site-wide: 51,982 out of 62,745

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

bioinformatics more details view paper
  • Downloaded 429 times
  • Download rankings, all-time:
    • Site-wide: 22,980 out of 62,745
    • In bioinformatics: 3,268 out of 6,251
  • Year to date:
    • Site-wide: 32,383 out of 62,745
  • Since beginning of last month:
    • Site-wide: 44,045 out of 62,745

Tximeta: reference sequence checksums for provenance identification in RNA-seq

bioinformatics more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 37,600 out of 62,745
    • In bioinformatics: 4,559 out of 6,251
  • Year to date:
    • Site-wide: 14,447 out of 62,745
  • Since beginning of last month:
    • Site-wide: 692 out of 62,745

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