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Author: Hirak Sarkar

Rankings

  • All-time downloads: 20,226 (rank: 2,502 out of 365,939)
  • Categories:
    • bioinformatics: 20,226 (rank: 120 out of 31,546)

Downloads per author, site-wide

Preprints

RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

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  • Downloaded 12,657 times
  • Download rankings, all-time:
    • Site-wide: 145 out of 85,062
    • In bioinformatics: 19 out of 8,142
  • Year to date:
    • Site-wide: 613 out of 85,062
  • Since beginning of last month:
    • Site-wide: 1,568 out of 85,062

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 3,997 times
  • Download rankings, all-time:
    • Site-wide: 1,040 out of 85,062
    • In bioinformatics: 184 out of 8,142
  • Year to date:
    • Site-wide: 725 out of 85,062
  • Since beginning of last month:
    • Site-wide: 1,113 out of 85,062

Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification

bioinformatics more details view paper
  • Downloaded 1,318 times
  • Download rankings, all-time:
    • Site-wide: 6,875 out of 85,062
    • In bioinformatics: 1,229 out of 8,142
  • Year to date:
    • Site-wide: 27,839 out of 85,062
  • Since beginning of last month:
    • Site-wide: 36,846 out of 85,062

A space and time-efficient index for the compacted colored de Bruijn graph

bioinformatics more details view paper
  • Downloaded 886 times
  • Download rankings, all-time:
    • Site-wide: 13,084 out of 85,062
    • In bioinformatics: 2,092 out of 8,142
  • Year to date:
    • Site-wide: 59,486 out of 85,062
  • Since beginning of last month:
    • Site-wide: 79,466 out of 85,062

Quark enables semi-reference-based compression of RNA-seq data

bioinformatics more details view paper
  • Downloaded 611 times
  • Download rankings, all-time:
    • Site-wide: 22,791 out of 85,062
    • In bioinformatics: 3,247 out of 8,142
  • Year to date:
    • Site-wide: 80,900 out of 85,062
  • Since beginning of last month:
    • Site-wide: 75,837 out of 85,062

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

bioinformatics more details view paper
  • Downloaded 512 times
  • Download rankings, all-time:
    • Site-wide: 28,699 out of 85,062
    • In bioinformatics: 3,823 out of 8,142
  • Year to date:
    • Site-wide: 2,834 out of 85,062
  • Since beginning of last month:
    • Site-wide: 6,282 out of 85,062

A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification

bioinformatics more details view paper
  • Downloaded 245 times
  • Download rankings, all-time:
    • Site-wide: 58,526 out of 85,062
    • In bioinformatics: 6,289 out of 8,142
  • Year to date:
    • Site-wide: 8,891 out of 85,062
  • Since beginning of last month:
    • Site-wide: 23,352 out of 85,062

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