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Author: Jack Kuipers

Rankings

  • All-time downloads: 17,050 (rank: 15,079 )
  • Categories:
    • bioinformatics: 3,195 (rank: 5,292 (tie) )
    • cancer biology: 9,328 (rank: 266 )
    • evolutionary biology: 146 (rank: 27,194 (tie) )
    • genomics: 1,070 (rank: 25,296 (tie) )
    • oncology: 3,018 (rank: 95 (tie) )
    • systems biology: 293 (rank: 14,001 (tie) )

Downloads per author, site-wide

Preprints

Joint copy number and mutation phylogeny reconstruction fromsingle-cell amplicon sequencing data

bioinformatics more details view paper

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Clonal Evolution of Acute Myeloid Leukemia Revealed by High-Throughput Single-Cell Genomics

cancer biology more details view paper
  • Downloaded 3,253 times
  • Download rankings, all-time:
    • Site-wide: 5,122
    • In cancer biology: 73
  • Year to date:
    • Site-wide: 52,714
  • Since beginning of last month:
    • Site-wide: 118,729

The Tumor Profiler Study: Integrated, multi-omic, functional tumor profiling for clinical decision support

oncology more details view paper
  • Downloaded 3,018 times
  • Download rankings, all-time:
    • Site-wide: 5,714
    • In oncology: 6
  • Year to date:
    • Site-wide: 6,265
  • Since beginning of last month:
    • Site-wide: 11,431

Single-cell copy number calling and event history reconstruction

cancer biology more details view paper
  • Downloaded 1,510 times
  • Download rankings, all-time:
    • Site-wide: 15,908
    • In cancer biology: 337
  • Year to date:
    • Site-wide: 9,446
  • Since beginning of last month:
    • Site-wide: 11,799

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

bioinformatics more details view paper
  • Downloaded 1,294 times
  • Download rankings, all-time:
    • Site-wide: 20,055
    • In bioinformatics: 2,240
  • Year to date:
    • Site-wide: 85,170
  • Since beginning of last month:
    • Site-wide: 142,322

Spatial distribution of private gene mutations in clear cell renal cell carcinoma

cancer biology more details view paper
  • Downloaded 1,147 times
  • Download rankings, all-time:
    • Site-wide: 24,118
    • In cancer biology: 587
  • Year to date:
    • Site-wide: 27,617
  • Since beginning of last month:
    • Site-wide: 82,711

A statistical test on single-cell data reveals widespread recurrent mutations in tumor evolution

cancer biology more details view paper
  • Downloaded 1,127 times
  • Download rankings, all-time:
    • Site-wide: 24,790
    • In cancer biology: 613
  • Year to date:
    • Site-wide: 126,806
  • Since beginning of last month:
    • Site-wide: 99,693

SCIΦ: Single-cell mutation identification via phylogenetic inference

bioinformatics more details view paper
  • Downloaded 1,082 times
  • Download rankings, all-time:
    • Site-wide: 26,385
    • In bioinformatics: 2,901
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 143,756

Within-patient genetic diversity of SARS-CoV-2

genomics more details view paper
  • Downloaded 1,070 times
  • Download rankings, all-time:
    • Site-wide: 26,829
    • In genomics: 2,372
  • Year to date:
    • Site-wide: 38,705
  • Since beginning of last month:
    • Site-wide: 31,771

Mutational interactions define novel cancer subgroups

cancer biology more details view paper
  • Downloaded 811 times
  • Download rankings, all-time:
    • Site-wide: 40,284
    • In cancer biology: 1,088
  • Year to date:
    • Site-wide: 69,294
  • Since beginning of last month:
    • Site-wide: 123,917

Tree inference for single-cell data

cancer biology more details view paper
  • Downloaded 737 times
  • Download rankings, all-time:
    • Site-wide: 46,214
    • In cancer biology: 1,277
  • Year to date:
    • Site-wide: 69,755
  • Since beginning of last month:
    • Site-wide: 142,084

scAmpi - A versatile pipeline for single-cell RNA-seq analysis from basics to clinics

bioinformatics more details view paper
  • Downloaded 485 times
  • Download rankings, all-time:
    • Site-wide: 78,441
    • In bioinformatics: 7,157
  • Year to date:
    • Site-wide: 107,474
  • Since beginning of last month:
    • Site-wide: 31,991

Improved pathway reconstruction from RNA interference screens by exploiting off-target effects

bioinformatics more details view paper
  • Downloaded 334 times
  • Download rankings, all-time:
    • Site-wide: 111,712
    • In bioinformatics: 9,280
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 160,790

Mapping single-cell transcriptomes to copy number evolutionary trees

cancer biology more details view paper
  • Downloaded 306 times
  • Download rankings, all-time:
    • Site-wide: 118,976
    • In cancer biology: 3,605
  • Year to date:
    • Site-wide: 7,648
  • Since beginning of last month:
    • Site-wide: 5,814

A statistical test for clonal exclusivity in tumour evolution

cancer biology more details view paper
  • Downloaded 262 times
  • Download rankings, all-time:
    • Site-wide: 130,850
    • In cancer biology: 3,983
  • Year to date:
    • Site-wide: 57,439
  • Since beginning of last month:
    • Site-wide: 88,658

Multi-omics subtyping of hepatocellular carcinoma patients using a Bayesian network mixture model

systems biology more details view paper
  • Downloaded 177 times
  • Download rankings, all-time:
    • Site-wide: 152,461
    • In systems biology: 3,139
  • Year to date:
    • Site-wide: 3,447
  • Since beginning of last month:
    • Site-wide: 3,128

Joint inference of repeated evolutionary trajectories and patterns of clonal exclusivity or co-occurrence from tumor mutation trees

cancer biology more details view paper
  • Downloaded 175 times
  • Download rankings, all-time:
    • Site-wide: 152,971
    • In cancer biology: 4,711
  • Year to date:
    • Site-wide: 10,404
  • Since beginning of last month:
    • Site-wide: 10,493

Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C

evolutionary biology more details view paper
  • Downloaded 146 times
  • Download rankings, all-time:
    • Site-wide: 158,858
    • In evolutionary biology: 7,446
  • Year to date:
    • Site-wide: 48,469
  • Since beginning of last month:
    • Site-wide: 116,827

Discovering gene regulatory networks of multiple phenotypic groups using dynamic Bayesian networks

systems biology more details view paper
  • Downloaded 116 times
  • Download rankings, all-time:
    • Site-wide: 163,846
    • In systems biology: 3,325
  • Year to date:
    • Site-wide: 17,330
  • Since beginning of last month:
    • Site-wide: 4,358

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