Author: Ross C Hardison

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Preprints

Transcriptional burst initiation and polymerase pause release are key control points of transcriptional regulation

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Re-configuration of Chromatin Structure During the Mitosis-G1 Phase Transition

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HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient

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The changing mouse embryo transcriptome at whole tissue and single-cell resolution

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Hierarchical Domain Structure Reveals the Divergence of Activity among TADs and Boundaries

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An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

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S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data

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A hyperactive transcriptional state marks genome reactivation at the mitosis-G1 transition

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Bayesian Modeling of Epigenetic Variation in Multiple Human Cell Types

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Genome-wide comparative analysis reveals human- mouse regulatory landscape and evolution

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Snapshot: clustering and visualizing epigenetic history during cell differentiation

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ZNF410 uniquely activates the NuRD component CHD4 to silence fetal hemoglobin expression

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Accurate and Reproducible Functional Maps in 127 Human Cell Types via 2D Genome Segmentation

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Effects of sheared chromatin length on ChIP-seq quality and sensitivity

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Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of mouse hematopoietic cells

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High-dimensional association detection in large scale genomic data

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Detecting local changes in chromatin architecture with false discovery control

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S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types

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