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Author: Sandrine Dudoit

Rankings

  • All-time downloads: 62,445 (rank: 2,076 )
  • Categories:
    • bioinformatics: 15,145 (rank: 369 )
    • genomics: 5,091 (rank: 4,322 (tie) )
    • microbiology: 1,520 (rank: 8,356 (tie) )
    • neuroscience: 40,689 (rank: 53 (tie) )

Downloads per author, site-wide

Preprints

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

neuroscience more details view paper
  • Downloaded 32,616 times
  • Download rankings, all-time:
    • Site-wide: 185
    • In neuroscience: 5
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 4,808 times
  • Download rankings, all-time:
    • Site-wide: 1,955
    • In neuroscience: 112
  • Year to date:
    • Site-wide: 1,330
  • Since beginning of last month:
    • Site-wide: 1,514

ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 4,721 times
  • Download rankings, all-time:
    • Site-wide: 2,012
    • In bioinformatics: 178
  • Year to date:
    • Site-wide: 37,950
  • Since beginning of last month:
    • Site-wide: 78,616

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

genomics more details view paper
  • Downloaded 3,933 times
  • Download rankings, all-time:
    • Site-wide: 2,606
    • In genomics: 303
  • Year to date:
    • Site-wide: 17,140
  • Since beginning of last month:
    • Site-wide: 13,568

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 3,265 times
  • Download rankings, all-time:
    • Site-wide: 3,431
    • In neuroscience: 279
  • Year to date:
    • Site-wide: 1,405
  • Since beginning of last month:
    • Site-wide: 1,602

Trajectory-based differential expression analysis for single-cell sequencing data

bioinformatics more details view paper
  • Downloaded 3,256 times
  • Download rankings, all-time:
    • Site-wide: 3,445
    • In bioinformatics: 359
  • Year to date:
    • Site-wide: 9,482
  • Since beginning of last month:
    • Site-wide: 7,877

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

bioinformatics more details view paper
  • Downloaded 2,481 times
  • Download rankings, all-time:
    • Site-wide: 5,087
    • In bioinformatics: 572
  • Year to date:
    • Site-wide: 23,091
  • Since beginning of last month:
    • Site-wide: 30,714

Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads

microbiology more details view paper
  • Downloaded 1,520 times
  • Download rankings, all-time:
    • Site-wide: 10,495
    • In microbiology: 579
  • Year to date:
    • Site-wide: 34,968
  • Since beginning of last month:
    • Site-wide: 23,190

Data-adaptive pipeline for filtering and normalizing metabolomics data.

bioinformatics more details view paper
  • Downloaded 1,289 times
  • Download rankings, all-time:
    • Site-wide: 13,401
    • In bioinformatics: 1,654
  • Year to date:
    • Site-wide: 36,155
  • Since beginning of last month:
    • Site-wide: 20,863

Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis

genomics more details view paper
  • Downloaded 1,158 times
  • Download rankings, all-time:
    • Site-wide: 15,774
    • In genomics: 1,674
  • Year to date:
    • Site-wide: 16,497
  • Since beginning of last month:
    • Site-wide: 14,634

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

bioinformatics more details view paper
  • Downloaded 1,139 times
  • Download rankings, all-time:
    • Site-wide: 16,189
    • In bioinformatics: 1,987
  • Year to date:
    • Site-wide: 11,943
  • Since beginning of last month:
    • Site-wide: 8,525

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

bioinformatics more details view paper
  • Downloaded 937 times
  • Download rankings, all-time:
    • Site-wide: 21,547
    • In bioinformatics: 2,580
  • Year to date:
    • Site-wide: 83,255
  • Since beginning of last month:
    • Site-wide: 84,522

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

bioinformatics more details view paper
  • Downloaded 911 times
  • Download rankings, all-time:
    • Site-wide: 22,434
    • In bioinformatics: 2,683
  • Year to date:
    • Site-wide: 109,190
  • Since beginning of last month:
    • Site-wide: 104,574

Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects

bioinformatics more details view paper
  • Downloaded 213 times
  • Download rankings, all-time:
    • Site-wide: 98,922
    • In bioinformatics: 8,523
  • Year to date:
    • Site-wide: 4,109
  • Since beginning of last month:
    • Site-wide: 5,160

adductomicsR: A package for detection and quantification of protein adducts from mass spectra of tryptic digests

bioinformatics more details view paper
  • Downloaded 198 times
  • Download rankings, all-time:
    • Site-wide: 102,098
    • In bioinformatics: 8,706
  • Year to date:
    • Site-wide: 114,878
  • Since beginning of last month:
    • Site-wide: 74,065

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