Author: Sandrine Dudoit
- ORCiD: http://orcid.org/0000-0002-6069-8629
- Most recently observed institution: University of California, Berkeley
Rankings
- All-time downloads: 62,445 (rank: 2,076 )
- Categories:
- bioinformatics: 15,145 (rank: 369 )
- genomics: 5,091 (rank: 4,322 (tie) )
- microbiology: 1,520 (rank: 8,356 (tie) )
- neuroscience: 40,689 (rank: 53 (tie) )
Downloads per author, site-wide
Preprints
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia
neuroscience more details view paper- Downloaded 32,616 times
- Download rankings, all-time:
- Site-wide: 185
- In neuroscience: 5
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: None
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
neuroscience more details view paper- Downloaded 4,808 times
- Download rankings, all-time:
- Site-wide: 1,955
- In neuroscience: 112
- Year to date:
- Site-wide: 1,330
- Since beginning of last month:
- Site-wide: 1,514
ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data
bioinformatics more details view paper- Downloaded 4,721 times
- Download rankings, all-time:
- Site-wide: 2,012
- In bioinformatics: 178
- Year to date:
- Site-wide: 37,950
- Since beginning of last month:
- Site-wide: 78,616
Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq
genomics more details view paper- Downloaded 3,933 times
- Download rankings, all-time:
- Site-wide: 2,606
- In genomics: 303
- Year to date:
- Site-wide: 17,140
- Since beginning of last month:
- Site-wide: 13,568
A multimodal cell census and atlas of the mammalian primary motor cortex
neuroscience more details view paper- Downloaded 3,265 times
- Download rankings, all-time:
- Site-wide: 3,431
- In neuroscience: 279
- Year to date:
- Site-wide: 1,405
- Since beginning of last month:
- Site-wide: 1,602
Trajectory-based differential expression analysis for single-cell sequencing data
bioinformatics more details view paper- Downloaded 3,256 times
- Download rankings, all-time:
- Site-wide: 3,445
- In bioinformatics: 359
- Year to date:
- Site-wide: 9,482
- Since beginning of last month:
- Site-wide: 7,877
Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics
bioinformatics more details view paper- Downloaded 2,481 times
- Download rankings, all-time:
- Site-wide: 5,087
- In bioinformatics: 572
- Year to date:
- Site-wide: 23,091
- Since beginning of last month:
- Site-wide: 30,714
Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads
microbiology more details view paper- Downloaded 1,520 times
- Download rankings, all-time:
- Site-wide: 10,495
- In microbiology: 579
- Year to date:
- Site-wide: 34,968
- Since beginning of last month:
- Site-wide: 23,190
Data-adaptive pipeline for filtering and normalizing metabolomics data.
bioinformatics more details view paper- Downloaded 1,289 times
- Download rankings, all-time:
- Site-wide: 13,401
- In bioinformatics: 1,654
- Year to date:
- Site-wide: 36,155
- Since beginning of last month:
- Site-wide: 20,863
Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis
genomics more details view paper- Downloaded 1,158 times
- Download rankings, all-time:
- Site-wide: 15,774
- In genomics: 1,674
- Year to date:
- Site-wide: 16,497
- Since beginning of last month:
- Site-wide: 14,634
Improving replicability in single-cell RNA-Seq cell type discovery with Dune
bioinformatics more details view paper- Downloaded 1,139 times
- Download rankings, all-time:
- Site-wide: 16,189
- In bioinformatics: 1,987
- Year to date:
- Site-wide: 11,943
- Since beginning of last month:
- Site-wide: 8,525
Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications
bioinformatics more details view paper- Downloaded 937 times
- Download rankings, all-time:
- Site-wide: 21,547
- In bioinformatics: 2,580
- Year to date:
- Site-wide: 83,255
- Since beginning of last month:
- Site-wide: 84,522
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets
bioinformatics more details view paper- Downloaded 911 times
- Download rankings, all-time:
- Site-wide: 22,434
- In bioinformatics: 2,683
- Year to date:
- Site-wide: 109,190
- Since beginning of last month:
- Site-wide: 104,574
Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects
bioinformatics more details view paper- Downloaded 213 times
- Download rankings, all-time:
- Site-wide: 98,922
- In bioinformatics: 8,523
- Year to date:
- Site-wide: 4,109
- Since beginning of last month:
- Site-wide: 5,160
adductomicsR: A package for detection and quantification of protein adducts from mass spectra of tryptic digests
bioinformatics more details view paper- Downloaded 198 times
- Download rankings, all-time:
- Site-wide: 102,098
- In bioinformatics: 8,706
- Year to date:
- Site-wide: 114,878
- Since beginning of last month:
- Site-wide: 74,065
PanLingua
News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
- 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
- 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
- 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
- 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
- 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
- 22 Jan 2019: Nature just published an article about Rxivist and our data.
- 13 Jan 2019: The Rxivist preprint is live!