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Author: Sandrine Dudoit

  • ORCiD: http://orcid.org/0000-0002-6069-8629
  • Most recently observed institution: Department of Statistics, Division of Biostatistics, and Center for Computational Biology, University of California, Berkeley

Rankings

  • All-time downloads: 51,826 (rank: 741 out of 397,875)
  • Categories:
    • bioinformatics: 13,467 (rank: 362 out of 33,943)
    • genomics: 4,534 (rank: 4,227 out of 42,257)
    • microbiology: 1,396 (rank: 6,118 (tie) out of 45,800)
    • neuroscience: 32,429 (rank: 63 (tie) out of 66,585)

Downloads per author, site-wide

Preprints

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

neuroscience more details view paper
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    • Site-wide: 44 out of 93,222
    • In neuroscience: 5 out of 16,593
  • Year to date:
    • Site-wide: 26 out of 93,222
  • Since beginning of last month:
    • Site-wide: 67 out of 93,222

ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 4,568 times
  • Download rankings, all-time:
    • Site-wide: 918 out of 93,222
    • In bioinformatics: 154 out of 8,734
  • Year to date:
    • Site-wide: 19,557 out of 93,222
  • Since beginning of last month:
    • Site-wide: 23,807 out of 93,222

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

genomics more details view paper
  • Downloaded 3,683 times
  • Download rankings, all-time:
    • Site-wide: 1,356 out of 93,222
    • In genomics: 284 out of 5,870
  • Year to date:
    • Site-wide: 6,078 out of 93,222
  • Since beginning of last month:
    • Site-wide: 8,816 out of 93,222

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 3,068 times
  • Download rankings, all-time:
    • Site-wide: 1,879 out of 93,222
    • In neuroscience: 242 out of 16,593
  • Year to date:
    • Site-wide: 396 out of 93,222
  • Since beginning of last month:
    • Site-wide: 1,070 out of 93,222

Trajectory-based differential expression analysis for single-cell sequencing data

bioinformatics more details view paper
  • Downloaded 2,825 times
  • Download rankings, all-time:
    • Site-wide: 2,151 out of 93,222
    • In bioinformatics: 382 out of 8,734
  • Year to date:
    • Site-wide: 1,667 out of 93,222
  • Since beginning of last month:
    • Site-wide: 4,130 out of 93,222

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

bioinformatics more details view paper
  • Downloaded 2,265 times
  • Download rankings, all-time:
    • Site-wide: 3,117 out of 93,222
    • In bioinformatics: 550 out of 8,734
  • Year to date:
    • Site-wide: 26,536 out of 93,222
  • Since beginning of last month:
    • Site-wide: 19,939 out of 93,222

Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads

microbiology more details view paper
  • Downloaded 1,396 times
  • Download rankings, all-time:
    • Site-wide: 6,942 out of 93,222
    • In microbiology: 427 out of 8,123
  • Year to date:
    • Site-wide: 23,611 out of 93,222
  • Since beginning of last month:
    • Site-wide: 21,279 out of 93,222

Data-adaptive pipeline for filtering and normalizing metabolomics data.

bioinformatics more details view paper
  • Downloaded 1,151 times
  • Download rankings, all-time:
    • Site-wide: 9,579 out of 93,222
    • In bioinformatics: 1,585 out of 8,734
  • Year to date:
    • Site-wide: 19,256 out of 93,222
  • Since beginning of last month:
    • Site-wide: 33,149 out of 93,222

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

bioinformatics more details view paper
  • Downloaded 880 times
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    • Site-wide: 14,751 out of 93,222
    • In bioinformatics: 2,277 out of 8,734
  • Year to date:
    • Site-wide: 56,133 out of 93,222
  • Since beginning of last month:
    • Site-wide: 23,603 out of 93,222

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

bioinformatics more details view paper
  • Downloaded 866 times
  • Download rankings, all-time:
    • Site-wide: 15,103 out of 93,222
    • In bioinformatics: 2,334 out of 8,734
  • Year to date:
    • Site-wide: 68,187 out of 93,222
  • Since beginning of last month:
    • Site-wide: 59,376 out of 93,222

Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis

genomics more details view paper
  • Downloaded 851 times
  • Download rankings, all-time:
    • Site-wide: 15,511 out of 93,222
    • In genomics: 1,981 out of 5,870
  • Year to date:
    • Site-wide: 4,484 out of 93,222
  • Since beginning of last month:
    • Site-wide: 10,781 out of 93,222

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

bioinformatics more details view paper
  • Downloaded 747 times
  • Download rankings, all-time:
    • Site-wide: 18,931 out of 93,222
    • In bioinformatics: 2,819 out of 8,734
  • Year to date:
    • Site-wide: 2,722 out of 93,222
  • Since beginning of last month:
    • Site-wide: 7,972 out of 93,222

adductomicsR: A package for detection and quantification of protein adducts from mass spectra of tryptic digests

bioinformatics more details view paper
  • Downloaded 165 times
  • Download rankings, all-time:
    • Site-wide: 77,940 out of 93,222
    • In bioinformatics: 7,705 out of 8,734
  • Year to date:
    • Site-wide: 86,245 out of 93,222
  • Since beginning of last month:
    • Site-wide: 91,103 out of 93,222

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