Author: Sandrine Dudoit

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Preprints

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

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ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data

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An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

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Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

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Trajectory-based differential expression analysis for single-cell sequencing data

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Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

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A multimodal cell census and atlas of the mammalian primary motor cortex

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Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads

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Data-adaptive pipeline for filtering and normalizing metabolomics data.

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Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis

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Improving replicability in single-cell RNA-Seq cell type discovery with Dune

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Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

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clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

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adductomicsR: A package for detection and quantification of protein adducts from mass spectra of tryptic digests

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