Author: Sandrine Dudoit

Downloads per author, site-wide

Preprints

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

• Downloaded 32,616 times
• Download rankings, all-time:
  • Site-wide: 185
  • In neuroscience: 5
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: None

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

• Downloaded 4,808 times
• Download rankings, all-time:
  • Site-wide: 1,955
  • In neuroscience: 112
• Year to date:
  • Site-wide: 1,330
• Since beginning of last month:
  • Site-wide: 1,514

ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data

• Downloaded 4,721 times
• Download rankings, all-time:
  • Site-wide: 2,012
  • In bioinformatics: 178
• Year to date:
  • Site-wide: 37,950
• Since beginning of last month:
  • Site-wide: 78,616

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

• Downloaded 3,933 times
• Download rankings, all-time:
  • Site-wide: 2,606
  • In genomics: 303
• Year to date:
  • Site-wide: 17,140
• Since beginning of last month:
  • Site-wide: 13,568

A multimodal cell census and atlas of the mammalian primary motor cortex

• Downloaded 3,265 times
• Download rankings, all-time:
  • Site-wide: 3,431
  • In neuroscience: 279
• Year to date:
  • Site-wide: 1,405
• Since beginning of last month:
  • Site-wide: 1,602

Trajectory-based differential expression analysis for single-cell sequencing data

• Downloaded 3,256 times
• Download rankings, all-time:
  • Site-wide: 3,445
  • In bioinformatics: 359
• Year to date:
  • Site-wide: 9,482
• Since beginning of last month:
  • Site-wide: 7,877

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

• Downloaded 2,481 times
• Download rankings, all-time:
  • Site-wide: 5,087
  • In bioinformatics: 572
• Year to date:
  • Site-wide: 23,091
• Since beginning of last month:
  • Site-wide: 30,714

Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads

• Downloaded 1,520 times
• Download rankings, all-time:
  • Site-wide: 10,495
  • In microbiology: 579
• Year to date:
  • Site-wide: 34,968
• Since beginning of last month:
  • Site-wide: 23,190

Data-adaptive pipeline for filtering and normalizing metabolomics data.

• Downloaded 1,289 times
• Download rankings, all-time:
  • Site-wide: 13,401
  • In bioinformatics: 1,654
• Year to date:
  • Site-wide: 36,155
• Since beginning of last month:
  • Site-wide: 20,863

Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis

• Downloaded 1,158 times
• Download rankings, all-time:
  • Site-wide: 15,774
  • In genomics: 1,674
• Year to date:
  • Site-wide: 16,497
• Since beginning of last month:
  • Site-wide: 14,634

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

• Downloaded 1,139 times
• Download rankings, all-time:
  • Site-wide: 16,189
  • In bioinformatics: 1,987
• Year to date:
  • Site-wide: 11,943
• Since beginning of last month:
  • Site-wide: 8,525

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

• Downloaded 937 times
• Download rankings, all-time:
  • Site-wide: 21,547
  • In bioinformatics: 2,580
• Year to date:
  • Site-wide: 83,255
• Since beginning of last month:
  • Site-wide: 84,522

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

• Downloaded 911 times
• Download rankings, all-time:
  • Site-wide: 22,434
  • In bioinformatics: 2,683
• Year to date:
  • Site-wide: 109,190
• Since beginning of last month:
  • Site-wide: 104,574

Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects

• Downloaded 213 times
• Download rankings, all-time:
  • Site-wide: 98,922
  • In bioinformatics: 8,523
• Year to date:
  • Site-wide: 4,109
• Since beginning of last month:
  • Site-wide: 5,160

adductomicsR: A package for detection and quantification of protein adducts from mass spectra of tryptic digests

• Downloaded 198 times
• Download rankings, all-time:
  • Site-wide: 102,098
  • In bioinformatics: 8,706
• Year to date:
  • Site-wide: 114,878
• Since beginning of last month:
  • Site-wide: 74,065