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Author: Sandrine Dudoit

  • ORCiD: http://orcid.org/0000-0002-6069-8629
  • Most recently observed institution: Department of Statistics, Division of Biostatistics, and Center for Computational Biology, University of California, Berkeley

Rankings

  • All-time downloads: 58,046 (rank: 2,056 out of 509,521)
  • Categories:
    • bioinformatics: 14,254 (rank: 369 out of 36,841)
    • genomics: 4,807 (rank: 4,292 out of 45,500)
    • microbiology: 1,454 (rank: 7,510 (tie) out of 52,210)
    • neuroscience: 37,531 (rank: 57 (tie) out of 73,577)

Downloads per author, site-wide

Preprints

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

neuroscience more details view paper
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  • Download rankings, all-time:
    • Site-wide: 162 out of 118,102
    • In neuroscience: 5 out of 18,580
  • Year to date:
    • Site-wide: 145 out of 118,102
  • Since beginning of last month:
    • Site-wide: 722 out of 118,102

ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 4,668 times
  • Download rankings, all-time:
    • Site-wide: 1,751 out of 118,102
    • In bioinformatics: 169 out of 9,568
  • Year to date:
    • Site-wide: 25,953 out of 118,102
  • Since beginning of last month:
    • Site-wide: 31,463 out of 118,102

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 3,909 times
  • Download rankings, all-time:
    • Site-wide: 2,255 out of 118,102
    • In neuroscience: 153 out of 18,580
  • Year to date:
    • Site-wide: 1,249 out of 118,102
  • Since beginning of last month:
    • Site-wide: 2,113 out of 118,102

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

genomics more details view paper
  • Downloaded 3,791 times
  • Download rankings, all-time:
    • Site-wide: 2,368 out of 118,102
    • In genomics: 299 out of 6,432
  • Year to date:
    • Site-wide: 12,271 out of 118,102
  • Since beginning of last month:
    • Site-wide: 34,273 out of 118,102

Trajectory-based differential expression analysis for single-cell sequencing data

bioinformatics more details view paper
  • Downloaded 3,022 times
  • Download rankings, all-time:
    • Site-wide: 3,318 out of 118,102
    • In bioinformatics: 381 out of 9,568
  • Year to date:
    • Site-wide: 4,636 out of 118,102
  • Since beginning of last month:
    • Site-wide: 11,746 out of 118,102

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

bioinformatics more details view paper
  • Downloaded 2,398 times
  • Download rankings, all-time:
    • Site-wide: 4,619 out of 118,102
    • In bioinformatics: 549 out of 9,568
  • Year to date:
    • Site-wide: 26,743 out of 118,102
  • Since beginning of last month:
    • Site-wide: 20,492 out of 118,102

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 2,110 times
  • Download rankings, all-time:
    • Site-wide: 5,567 out of 118,102
    • In neuroscience: 565 out of 18,580
  • Year to date:
    • Site-wide: 2,479 out of 118,102
  • Since beginning of last month:
    • Site-wide: 246 out of 118,102

Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads

microbiology more details view paper
  • Downloaded 1,454 times
  • Download rankings, all-time:
    • Site-wide: 9,691 out of 118,102
    • In microbiology: 517 out of 9,337
  • Year to date:
    • Site-wide: 35,121 out of 118,102
  • Since beginning of last month:
    • Site-wide: 34,098 out of 118,102

Data-adaptive pipeline for filtering and normalizing metabolomics data.

bioinformatics more details view paper
  • Downloaded 1,231 times
  • Download rankings, all-time:
    • Site-wide: 12,497 out of 118,102
    • In bioinformatics: 1,602 out of 9,568
  • Year to date:
    • Site-wide: 27,959 out of 118,102
  • Since beginning of last month:
    • Site-wide: 34,066 out of 118,102

Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis

genomics more details view paper
  • Downloaded 1,016 times
  • Download rankings, all-time:
    • Site-wide: 16,601 out of 118,102
    • In genomics: 1,796 out of 6,432
  • Year to date:
    • Site-wide: 9,097 out of 118,102
  • Since beginning of last month:
    • Site-wide: 12,700 out of 118,102

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

bioinformatics more details view paper
  • Downloaded 944 times
  • Download rankings, all-time:
    • Site-wide: 18,523 out of 118,102
    • In bioinformatics: 2,307 out of 9,568
  • Year to date:
    • Site-wide: 6,387 out of 118,102
  • Since beginning of last month:
    • Site-wide: 11,028 out of 118,102

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

bioinformatics more details view paper
  • Downloaded 911 times
  • Download rankings, all-time:
    • Site-wide: 19,488 out of 118,102
    • In bioinformatics: 2,453 out of 9,568
  • Year to date:
    • Site-wide: 73,585 out of 118,102
  • Since beginning of last month:
    • Site-wide: 81,546 out of 118,102

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

bioinformatics more details view paper
  • Downloaded 894 times
  • Download rankings, all-time:
    • Site-wide: 20,006 out of 118,102
    • In bioinformatics: 2,502 out of 9,568
  • Year to date:
    • Site-wide: 85,362 out of 118,102
  • Since beginning of last month:
    • Site-wide: 101,170 out of 118,102

adductomicsR: A package for detection and quantification of protein adducts from mass spectra of tryptic digests

bioinformatics more details view paper
  • Downloaded 186 times
  • Download rankings, all-time:
    • Site-wide: 93,476 out of 118,102
    • In bioinformatics: 8,154 out of 9,568
  • Year to date:
    • Site-wide: 105,663 out of 118,102
  • Since beginning of last month:
    • Site-wide: 111,693 out of 118,102

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