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Author: Mark Robinson

Rankings

  • All-time downloads: 40,300 (rank: 639 out of 336,406)
  • Categories:
    • bioinformatics: 34,121 (rank: 66 out of 28,939)
    • cancer biology: 666 (rank: 6,591 (tie) out of 22,520)
    • genetics: 1,865 (rank: 7,252 (tie) out of 32,484)
    • genomics: 2,977 (rank: 5,640 (tie) out of 37,036)
    • immunology: 671 (rank: 4,366 (tie) out of 16,739)

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Preprints

MINI REVIEW: Statistical methods for detecting differentially methylated loci and regions

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Bias, Robustness And Scalability In Differential Expression Analysis Of Single-Cell RNA-Seq Data

bioinformatics more details view paper
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Comparison of Clustering Methods for High-Dimensional Single-Cell Flow and Mass Cytometry Data

bioinformatics more details view paper
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Channel crosstalk correction in suspension and imaging mass cytometry

bioinformatics more details view paper
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Differential transcript usage from RNA-seq data: isoform pre-filtering improves performance of count-based methods

bioinformatics more details view paper
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On the discovery of population-specific state transitions from multi-sample multi-condition single-cell RNA sequencing data

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diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering

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A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes

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zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications

bioinformatics more details view paper
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Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens

genomics more details view paper
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CrispRVariants: precisely charting the mutation spectrum in genome engineering experiments

bioinformatics more details view paper
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An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

genomics more details view paper
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pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single-cell RNA-seq preprocessing tools

bioinformatics more details view paper
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Highly efficient DNA-free gene disruption in the agricultural pest Ceratitis capitata by CRISPR-Cas9 RNPs

genetics more details view paper
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ARMOR: an Automated Reproducible MOdular workflow for preprocessing and differential analysis of RNA-seq data

bioinformatics more details view paper
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Do count-based differential expression methods perform poorly when genes are expressed in only one condition?

bioinformatics more details view paper
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Maleness-on-the-Y (MoY) orchestrates male sex determination in major agricultural fruit fly pests

genetics more details view paper
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Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

bioinformatics more details view paper
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    • In bioinformatics: 2,066 out of 7,502
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TNFR2 induced priming of NLRP3-inflammasome via RIPK1 leads to pyroptosis in XIAP deficient cells

immunology more details view paper
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A general and powerful stage-wise testing procedure for differential expression and differential transcript usage

bioinformatics more details view paper
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BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty

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iCOBRA: open, reproducible, standardized and live method benchmarking

bioinformatics more details view paper
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A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

bioinformatics more details view paper
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benchmarkR: an R package for benchmarking genome-scale methods

bioinformatics more details view paper
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The proto CpG island methylator phenotype of sessile serrated adenoma/polyps

cancer biology more details view paper
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DAMEfinder: A method to detect differential allele-specific methylation

bioinformatics more details view paper
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Active Receptor Tyrosine Kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish

cancer biology more details view paper
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LincRNAs involved in DCS-induced fear extinction: Shedding light on the transcriptomic dark matter

genomics more details view paper
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