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Author: Davide Risso

Rankings

  • All-time downloads: 66,256 (rank: 1,979 )
  • Categories:
    • bioinformatics: 13,327 (rank: 439 )
    • genetics: 360 (rank: 29,574 (tie) )
    • genomics: 7,716 (rank: 2,631 (tie) )
    • neuroscience: 44,853 (rank: 44 )

Downloads per author, site-wide

Preprints

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

neuroscience more details view paper
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    • Site-wide: 185
    • In neuroscience: 5
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 4,808 times
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    • Site-wide: 1,968
    • In neuroscience: 114
  • Year to date:
    • Site-wide: 1,424
  • Since beginning of last month:
    • Site-wide: 1,823

ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 4,721 times
  • Download rankings, all-time:
    • Site-wide: 2,023
    • In bioinformatics: 180
  • Year to date:
    • Site-wide: 40,379
  • Since beginning of last month:
    • Site-wide: 91,784

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

genomics more details view paper
  • Downloaded 3,933 times
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    • Site-wide: 2,622
    • In genomics: 303
  • Year to date:
    • Site-wide: 18,426
  • Since beginning of last month:
    • Site-wide: 15,688

Orchestrating Single-Cell Analysis with Bioconductor

genomics more details view paper
  • Downloaded 3,783 times
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    • Site-wide: 2,764
    • In genomics: 327
  • Year to date:
    • Site-wide: 9,901
  • Since beginning of last month:
    • Site-wide: None

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 3,265 times
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    • Site-wide: 3,442
    • In neuroscience: 280
  • Year to date:
    • Site-wide: 1,503
  • Since beginning of last month:
    • Site-wide: 1,941

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

bioinformatics more details view paper
  • Downloaded 2,506 times
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    • Site-wide: 5,025
    • In bioinformatics: 566
  • Year to date:
    • Site-wide: 15,900
  • Since beginning of last month:
    • Site-wide: 12,080

Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development

neuroscience more details view paper
  • Downloaded 1,981 times
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    • Site-wide: 7,066
    • In neuroscience: 723
  • Year to date:
    • Site-wide: 5,574
  • Since beginning of last month:
    • Site-wide: 6,281

Complementary networks of cortical somatostatin interneurons enforce layer specific control

neuroscience more details view paper
  • Downloaded 1,724 times
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    • Site-wide: 8,741
    • In neuroscience: 927
  • Year to date:
    • Site-wide: 99,029
  • Since beginning of last month:
    • Site-wide: 102,819

Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data

bioinformatics more details view paper
  • Downloaded 1,710 times
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    • Site-wide: 8,851
    • In bioinformatics: 1,083
  • Year to date:
    • Site-wide: 8,376
  • Since beginning of last month:
    • Site-wide: 9,696

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

bioinformatics more details view paper
  • Downloaded 1,139 times
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    • Site-wide: 16,271
    • In bioinformatics: 1,995
  • Year to date:
    • Site-wide: 12,764
  • Since beginning of last month:
    • Site-wide: 10,434

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

bioinformatics more details view paper
  • Downloaded 937 times
  • Download rankings, all-time:
    • Site-wide: 21,609
    • In bioinformatics: 2,590
  • Year to date:
    • Site-wide: 86,252
  • Since beginning of last month:
    • Site-wide: 91,944

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

bioinformatics more details view paper
  • Downloaded 911 times
  • Download rankings, all-time:
    • Site-wide: 22,533
    • In bioinformatics: 2,689
  • Year to date:
    • Site-wide: 110,263
  • Since beginning of last month:
    • Site-wide: 105,378

mbkmeans: fast clustering for single cell data using mini-batch k-means

bioinformatics more details view paper
  • Downloaded 487 times
  • Download rankings, all-time:
    • Site-wide: 51,339
    • In bioinformatics: 5,306
  • Year to date:
    • Site-wide: 20,120
  • Since beginning of last month:
    • Site-wide: 38,847

SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor

bioinformatics more details view paper
  • Downloaded 478 times
  • Download rankings, all-time:
    • Site-wide: 52,376
    • In bioinformatics: 5,406
  • Year to date:
    • Site-wide: 1,390
  • Since beginning of last month:
    • Site-wide: 1,615

Shank3 Modulates Sleep and Expression of Circadian Transcription Factors

neuroscience more details view paper
  • Downloaded 459 times
  • Download rankings, all-time:
    • Site-wide: 54,802
    • In neuroscience: 8,234
  • Year to date:
    • Site-wide: 86,095
  • Since beginning of last month:
    • Site-wide: 77,538

The human-specific BOLA2 duplication modifies iron homeostasis and anemia predisposition in chromosome 16p11.2 autism patients

genetics more details view paper
  • Downloaded 360 times
  • Download rankings, all-time:
    • Site-wide: 69,627
    • In genetics: 3,251
  • Year to date:
    • Site-wide: 55,383
  • Since beginning of last month:
    • Site-wide: 66,225

Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles

bioinformatics more details view paper
  • Downloaded 225 times
  • Download rankings, all-time:
    • Site-wide: 96,491
    • In bioinformatics: 8,371
  • Year to date:
    • Site-wide: 33,568
  • Since beginning of last month:
    • Site-wide: 17,548

Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects

bioinformatics more details view paper
  • Downloaded 213 times
  • Download rankings, all-time:
    • Site-wide: 99,034
    • In bioinformatics: 8,547
  • Year to date:
    • Site-wide: 4,388
  • Since beginning of last month:
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