Author: Davide Risso

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Preprints

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

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  • Site-wide: 185
  • In neuroscience: 5
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  • Site-wide: None
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An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

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  • Site-wide: 1,968
  • In neuroscience: 114
• Year to date:
  • Site-wide: 1,424
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  • Site-wide: 1,823

ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data

• Downloaded 4,721 times
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  • Site-wide: 2,023
  • In bioinformatics: 180
• Year to date:
  • Site-wide: 40,379
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  • Site-wide: 91,784

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

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  • Site-wide: 2,622
  • In genomics: 303
• Year to date:
  • Site-wide: 18,426
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  • Site-wide: 15,688

Orchestrating Single-Cell Analysis with Bioconductor

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  • Site-wide: 2,764
  • In genomics: 327
• Year to date:
  • Site-wide: 9,901
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  • Site-wide: None

A multimodal cell census and atlas of the mammalian primary motor cortex

• Downloaded 3,265 times
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  • Site-wide: 3,442
  • In neuroscience: 280
• Year to date:
  • Site-wide: 1,503
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  • Site-wide: 1,941

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

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  • Site-wide: 5,025
  • In bioinformatics: 566
• Year to date:
  • Site-wide: 15,900
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  • Site-wide: 12,080

Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development

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  • Site-wide: 7,066
  • In neuroscience: 723
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  • Site-wide: 6,281

Complementary networks of cortical somatostatin interneurons enforce layer specific control

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  • Site-wide: 8,741
  • In neuroscience: 927
• Year to date:
  • Site-wide: 99,029
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  • Site-wide: 102,819

Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data

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  • Site-wide: 8,851
  • In bioinformatics: 1,083
• Year to date:
  • Site-wide: 8,376
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  • Site-wide: 9,696

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

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  • Site-wide: 16,271
  • In bioinformatics: 1,995
• Year to date:
  • Site-wide: 12,764
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  • Site-wide: 10,434

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

• Downloaded 937 times
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  • Site-wide: 21,609
  • In bioinformatics: 2,590
• Year to date:
  • Site-wide: 86,252
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  • Site-wide: 91,944

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

• Downloaded 911 times
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  • Site-wide: 22,533
  • In bioinformatics: 2,689
• Year to date:
  • Site-wide: 110,263
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  • Site-wide: 105,378

mbkmeans: fast clustering for single cell data using mini-batch k-means

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  • Site-wide: 51,339
  • In bioinformatics: 5,306
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  • Site-wide: 20,120
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  • Site-wide: 38,847

SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor

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  • Site-wide: 52,376
  • In bioinformatics: 5,406
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  • Site-wide: 1,390
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  • Site-wide: 1,615

Shank3 Modulates Sleep and Expression of Circadian Transcription Factors

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  • Site-wide: 54,802
  • In neuroscience: 8,234
• Year to date:
  • Site-wide: 86,095
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  • Site-wide: 77,538

The human-specific BOLA2 duplication modifies iron homeostasis and anemia predisposition in chromosome 16p11.2 autism patients

• Downloaded 360 times
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  • Site-wide: 69,627
  • In genetics: 3,251
• Year to date:
  • Site-wide: 55,383
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  • Site-wide: 66,225

Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles

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  • Site-wide: 96,491
  • In bioinformatics: 8,371
• Year to date:
  • Site-wide: 33,568
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  • Site-wide: 17,548

Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects

• Downloaded 213 times
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  • Site-wide: 99,034
  • In bioinformatics: 8,547
• Year to date:
  • Site-wide: 4,388
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  • Site-wide: 6,309