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Author: Christoph Ziegenhain

Rankings

  • All-time downloads: 62,490 (rank: 2,071 )
  • Categories:
    • bioinformatics: 11,466 (rank: 563 (tie) )
    • developmental biology: 2,883 (rank: 667 (tie) )
    • genomics: 47,363 (rank: 158 )
    • microbiology: 778 (rank: 16,455 (tie) )

Downloads per author, site-wide

Preprints

Comparative analysis of single-cell RNA sequencing methods

genomics more details view paper
  • Downloaded 17,344 times
  • Download rankings, all-time:
    • Site-wide: 372
    • In genomics: 18
  • Year to date:
    • Site-wide: 8,976
  • Since beginning of last month:
    • Site-wide: 8,976

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 12,442 times
  • Download rankings, all-time:
    • Site-wide: 547
    • In genomics: 40
  • Year to date:
    • Site-wide: 5,054
  • Since beginning of last month:
    • Site-wide: 5,054

Single-cell RNA counting at allele- and isoform-resolution using Smart-seq3

genomics more details view paper
  • Downloaded 8,050 times
  • Download rankings, all-time:
    • Site-wide: 984
    • In genomics: 91
  • Year to date:
    • Site-wide: 2,987
  • Since beginning of last month:
    • Site-wide: 2,987

A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines

bioinformatics more details view paper
  • Downloaded 5,158 times
  • Download rankings, all-time:
    • Site-wide: 1,774
    • In bioinformatics: 146
  • Year to date:
    • Site-wide: 17,493
  • Since beginning of last month:
    • Site-wide: 17,493

mcSCRB-seq: sensitive and powerful single-cell RNA sequencing

genomics more details view paper
  • Downloaded 4,454 times
  • Download rankings, all-time:
    • Site-wide: 2,184
    • In genomics: 246
  • Year to date:
    • Site-wide: 32,090
  • Since beginning of last month:
    • Site-wide: 32,090

powsimR: Power analysis for bulk and single cell RNA-seq experiments

bioinformatics more details view paper
  • Downloaded 3,392 times
  • Download rankings, all-time:
    • Site-wide: 3,232
    • In bioinformatics: 333
  • Year to date:
    • Site-wide: 37,939
  • Since beginning of last month:
    • Site-wide: 37,939

The impact of amplification on differential expression analyses by RNA-seq

genomics more details view paper
  • Downloaded 3,008 times
  • Download rankings, all-time:
    • Site-wide: 3,821
    • In genomics: 448
  • Year to date:
    • Site-wide: 19,040
  • Since beginning of last month:
    • Site-wide: 19,040

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

bioinformatics more details view paper
  • Downloaded 2,916 times
  • Download rankings, all-time:
    • Site-wide: 3,978
    • In bioinformatics: 423
  • Year to date:
    • Site-wide: 47,533
  • Since beginning of last month:
    • Site-wide: 47,533

Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive demethylation in mammals

developmental biology more details view paper
  • Downloaded 2,291 times
  • Download rankings, all-time:
    • Site-wide: 5,707
    • In developmental biology: 65
  • Year to date:
    • Site-wide: 38,041
  • Since beginning of last month:
    • Site-wide: 38,041

Strategies for quantitative RNA-seq analyses among closely related species

genomics more details view paper
  • Downloaded 1,150 times
  • Download rankings, all-time:
    • Site-wide: 15,891
    • In genomics: 1,687
  • Year to date:
    • Site-wide: 61,847
  • Since beginning of last month:
    • Site-wide: 61,847

Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa

microbiology more details view paper
  • Downloaded 778 times
  • Download rankings, all-time:
    • Site-wide: 27,912
    • In microbiology: 1,634
  • Year to date:
    • Site-wide: 90,027
  • Since beginning of last month:
    • Site-wide: 90,027

Wnt/PCP-primed intestinal stem cells directly differentiate into enteroendocrine or Paneth cells

developmental biology more details view paper
  • Downloaded 592 times
  • Download rankings, all-time:
    • Site-wide: 40,215
    • In developmental biology: 929
  • Year to date:
    • Site-wide: 14,414
  • Since beginning of last month:
    • Site-wide: 14,414

Transcriptional kinetics and molecular functions of long non-coding RNAs

genomics more details view paper
  • Downloaded 554 times
  • Download rankings, all-time:
    • Site-wide: 43,781
    • In genomics: 3,577
  • Year to date:
    • Site-wide: 27,070
  • Since beginning of last month:
    • Site-wide: 27,070

anonymizeBAM: Versatile anonymization of human sequence data for open data sharing

genomics more details view paper
  • Downloaded 361 times
  • Download rankings, all-time:
    • Site-wide: 68,984
    • In genomics: 4,834
  • Year to date:
    • Site-wide: 1,798
  • Since beginning of last month:
    • Site-wide: 1,798

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