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Author: Christoph Ziegenhain

Rankings

  • All-time downloads: 56,874 (rank: 632 out of 382,985)
  • Categories:
    • bioinformatics: 10,904 (rank: 479 (tie) out of 32,788)
    • developmental biology: 1,933 (rank: 851 (tie) out of 14,868)
    • genomics: 43,316 (rank: 145 out of 40,806)
    • microbiology: 721 (rank: 11,549 (tie) out of 43,075)

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Preprints

Comparative analysis of single-cell RNA sequencing methods

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    • Site-wide: 6,323 out of 89,374

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

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    • In genomics: 41 out of 5,698
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    • Site-wide: 503 out of 89,374
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Single-cell RNA counting at allele- and isoform-resolution using Smart-seq3

genomics more details view paper
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    • In genomics: 90 out of 5,698
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    • Site-wide: 397 out of 89,374
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A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines

bioinformatics more details view paper
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    • In bioinformatics: 132 out of 8,433
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mcSCRB-seq: sensitive and powerful single-cell RNA sequencing

genomics more details view paper
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    • In genomics: 213 out of 5,698
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powsimR: Power analysis for bulk and single cell RNA-seq experiments

bioinformatics more details view paper
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    • In bioinformatics: 283 out of 8,433
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The impact of amplification on differential expression analyses by RNA-seq

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    • In genomics: 404 out of 5,698
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    • Site-wide: 43,267 out of 89,374

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

bioinformatics more details view paper
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    • Site-wide: 23,635 out of 89,374

Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive demethylation in mammals

developmental biology more details view paper
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    • Site-wide: 4,802 out of 89,374

Strategies for quantitative RNA-seq analyses among closely related species

genomics more details view paper
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    • In genomics: 1,601 out of 5,698
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    • Site-wide: 19,791 out of 89,374
  • Since beginning of last month:
    • Site-wide: 20,944 out of 89,374

Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa

microbiology more details view paper
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    • Site-wide: 19,000 out of 89,374
    • In microbiology: 1,182 out of 7,705
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    • Site-wide: 58,582 out of 89,374
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    • Site-wide: 51,707 out of 89,374

Deducing transcriptional kinetics and molecular functions of long non-coding RNAs using allele-sensitive single-cell RNA-sequencing

genomics more details view paper
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    • In genomics: 4,572 out of 5,698
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    • Site-wide: 16,428 out of 89,374

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