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Author: Bonnie Berger

Rankings

  • All-time downloads: 49,304 (rank: 775 out of 396,102)
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    • bioinformatics: 18,801 (rank: 139 out of 33,752)
    • developmental biology: 794 (rank: 3,599 (tie) out of 15,430)
    • genetics: 27,784 (rank: 188 out of 36,383)
    • molecular biology: 1,925 (rank: 1,537 (tie) out of 20,927)

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Preprints

Ancient human genomes suggest three ancestral populations for present-day Europeans

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Reconstructing Austronesian population history in Island Southeast Asia

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Panoramic stitching of heterogeneous single-cell transcriptomic data

bioinformatics more details view paper
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Coexpression enables multi-study cellular trajectories of development and disease

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Efficient Bayesian mixed model analysis increases association power in large cohorts

genetics more details view paper
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Geometric Sketching Compactly Summarizes the Single-Cell Transcriptomic Landscape

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CryoDRGN: Reconstruction of heterogeneous structures from cryo-electron micrographs using neural networks

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Topaz-Denoise: general deep denoising models for cryoEM and cryoET

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Calibrating the Human Mutation Rate via Ancestral Recombination Density in Diploid Genomes

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Metagenomic binning through low density hashing

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Latent variable model for aligning barcoded short-reads improves downstream analyses

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Density-Preserving Data Visualization Unveils Dynamic Patterns of Single-Cell Transcriptomic Variability

bioinformatics more details view paper
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Neural Data Visualization for Scalable and Generalizable Single Cell Analysis

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    • In bioinformatics: 1,691 out of 8,688
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    • Site-wide: 72,622 out of 92,764

Two variance component model improves genetic prediction in family data sets

genetics more details view paper
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    • In genetics: 840 out of 4,753
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C. elegans exhibits coordinated oscillation in gene activation in single-cell developmental data

developmental biology more details view paper
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    • In developmental biology: 411 out of 2,752
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Carnelian: alignment-free functional binning and abundance estimation of metagenomic reads

bioinformatics more details view paper
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Fast genotyping of known SNPs through approximate k-mer matching

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Schema: A general framework for integrating heterogeneous single-cell modalities

bioinformatics more details view paper
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Hopper: A Mathematically Optimal Algorithm for Sketching Biological Data

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Sequence biases in CLIP experimental data are incorporated in protein RNA-binding models

bioinformatics more details view paper
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    • Site-wide: 64,981 out of 92,764

A randomized parallel algorithm for efficiently finding near-optimal universal hitting sets

bioinformatics more details view paper
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Privacy-preserving biomedical database queries with optimal privacy-utility trade-offs

bioinformatics more details view paper
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    • In bioinformatics: 6,281 out of 8,688
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    • Site-wide: 32,102 out of 92,764

Learning the language of viral evolution and escape

bioinformatics more details view paper
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