Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,233 bioRxiv papers from 267,795 authors.

Author: Fritz J. Sedlazeck

Rankings

  • All-time downloads: 53,359 (rank: 234 out of 267,795)
  • Categories:
    • bioinformatics: 28,746 (rank: 60 out of 23,889)
    • evolutionary biology: 654 (rank: 5,104 (tie) out of 14,799)
    • genetics: 1,934 (rank: 6,009 (tie) out of 27,063)
    • genomics: 22,025 (rank: 269 (tie) out of 31,251)

Downloads per author, site-wide

Preprints

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 9,284 times
  • Download rankings, all-time:
    • Site-wide: 118 out of 60,233
    • In genomics: 39 out of 4,181
  • Year to date:
    • Site-wide: 16 out of 60,233
  • Since beginning of last month:
    • Site-wide: 82 out of 60,233

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
  • Downloaded 6,393 times
  • Download rankings, all-time:
    • Site-wide: 247 out of 60,233
    • In bioinformatics: 44 out of 6,078
  • Year to date:
    • Site-wide: 8,368 out of 60,233
  • Since beginning of last month:
    • Site-wide: 17,159 out of 60,233

Accurate detection of complex structural variations using single molecule sequencing

bioinformatics more details view paper
  • Downloaded 5,155 times
  • Download rankings, all-time:
    • Site-wide: 368 out of 60,233
    • In bioinformatics: 72 out of 6,078
  • Year to date:
    • Site-wide: 1,979 out of 60,233
  • Since beginning of last month:
    • Site-wide: 4,658 out of 60,233

Targeted Nanopore Sequencing with Cas9 for studies of methylation, structural variants and mutations

genomics more details view paper
  • Downloaded 4,477 times
  • Download rankings, all-time:
    • Site-wide: 482 out of 60,233
    • In genomics: 127 out of 4,181
  • Year to date:
    • Site-wide: 74 out of 60,233
  • Since beginning of last month:
    • Site-wide: 124 out of 60,233

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 3,245 times
  • Download rankings, all-time:
    • Site-wide: 897 out of 60,233
    • In bioinformatics: 180 out of 6,078
  • Year to date:
    • Site-wide: 131 out of 60,233
  • Since beginning of last month:
    • Site-wide: 16 out of 60,233

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

bioinformatics more details view paper
  • Downloaded 3,136 times
  • Download rankings, all-time:
    • Site-wide: 957 out of 60,233
    • In bioinformatics: 192 out of 6,078
  • Year to date:
    • Site-wide: 1,167 out of 60,233
  • Since beginning of last month:
    • Site-wide: 1,574 out of 60,233

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 2,232 times
  • Download rankings, all-time:
    • Site-wide: 1,763 out of 60,233
    • In genomics: 393 out of 4,181
  • Year to date:
    • Site-wide: 432 out of 60,233
  • Since beginning of last month:
    • Site-wide: 2,629 out of 60,233

Fast and accurate reference-guided scaffolding of draft genomes

bioinformatics more details view paper
  • Downloaded 2,158 times
  • Download rankings, all-time:
    • Site-wide: 1,870 out of 60,233
    • In bioinformatics: 385 out of 6,078
  • Year to date:
    • Site-wide: 286 out of 60,233
  • Since beginning of last month:
    • Site-wide: 726 out of 60,233

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 2,103 times
  • Download rankings, all-time:
    • Site-wide: 1,956 out of 60,233
    • In genomics: 433 out of 4,181
  • Year to date:
    • Site-wide: 306 out of 60,233
  • Since beginning of last month:
    • Site-wide: 274 out of 60,233

Parliament2: Fast Structural Variant Calling Using Optimized Combinations of Callers

bioinformatics more details view paper
  • Downloaded 1,999 times
  • Download rankings, all-time:
    • Site-wide: 2,158 out of 60,233
    • In bioinformatics: 449 out of 6,078
  • Year to date:
    • Site-wide: 867 out of 60,233
  • Since beginning of last month:
    • Site-wide: 1,600 out of 60,233

Detection of GBA missense mutations and other variants using the Oxford Nanopore MinION

genetics more details view paper
  • Downloaded 1,934 times
  • Download rankings, all-time:
    • Site-wide: 2,282 out of 60,233
    • In genetics: 219 out of 3,435
  • Year to date:
    • Site-wide: 5,986 out of 60,233
  • Since beginning of last month:
    • Site-wide: 9,480 out of 60,233

xAtlas: Scalable small variant calling across heterogeneous next-generation sequencing experiments

bioinformatics more details view paper
  • Downloaded 1,558 times
  • Download rankings, all-time:
    • Site-wide: 3,272 out of 60,233
    • In bioinformatics: 660 out of 6,078
  • Year to date:
    • Site-wide: 7,226 out of 60,233
  • Since beginning of last month:
    • Site-wide: 14,545 out of 60,233

GenomeScope: Fast reference-free genome profiling from short reads

bioinformatics more details view paper
  • Downloaded 1,540 times
  • Download rankings, all-time:
    • Site-wide: 3,341 out of 60,233
    • In bioinformatics: 675 out of 6,078
  • Year to date:
    • Site-wide: 28,472 out of 60,233
  • Since beginning of last month:
    • Site-wide: 13,138 out of 60,233

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

genomics more details view paper
  • Downloaded 1,421 times
  • Download rankings, all-time:
    • Site-wide: 3,833 out of 60,233
    • In genomics: 714 out of 4,181
  • Year to date:
    • Site-wide: 26,591 out of 60,233
  • Since beginning of last month:
    • Site-wide: 20,965 out of 60,233

Transient structural variations alter gene expression and quantitative traits in Schizosaccharomyces pombe.

genomics more details view paper
  • Downloaded 1,188 times
  • Download rankings, all-time:
    • Site-wide: 5,112 out of 60,233
    • In genomics: 879 out of 4,181
  • Year to date:
    • Site-wide: 36,227 out of 60,233
  • Since beginning of last month:
    • Site-wide: 48,268 out of 60,233

LRSim: a Linked Reads Simulator generating insights for better genome partitioning

bioinformatics more details view paper
  • Downloaded 1,139 times
  • Download rankings, all-time:
    • Site-wide: 5,513 out of 60,233
    • In bioinformatics: 1,060 out of 6,078
  • Year to date:
    • Site-wide: 53,866 out of 60,233
  • Since beginning of last month:
    • Site-wide: 45,711 out of 60,233

Paragraph: A graph-based structural variant genotyper for short-read sequence data

genomics more details view paper
  • Downloaded 958 times
  • Download rankings, all-time:
    • Site-wide: 7,302 out of 60,233
    • In genomics: 1,166 out of 4,181
  • Year to date:
    • Site-wide: 1,399 out of 60,233
  • Since beginning of last month:
    • Site-wide: 2,352 out of 60,233

SplitThreader: Exploration and analysis of rearrangements in cancer genomes

bioinformatics more details view paper
  • Downloaded 884 times
  • Download rankings, all-time:
    • Site-wide: 8,295 out of 60,233
    • In bioinformatics: 1,471 out of 6,078
  • Year to date:
    • Site-wide: 29,876 out of 60,233
  • Since beginning of last month:
    • Site-wide: 33,391 out of 60,233

Ancestral admixture is the main determinant of global biodiversity in fission yeast

evolutionary biology more details view paper
  • Downloaded 654 times
  • Download rankings, all-time:
    • Site-wide: 12,917 out of 60,233
    • In evolutionary biology: 928 out of 4,111
  • Year to date:
    • Site-wide: 8,365 out of 60,233
  • Since beginning of last month:
    • Site-wide: 19,041 out of 60,233

SVCollector: Optimized sample selection for validating and long-read resequencing of structural variants

bioinformatics more details view paper
  • Downloaded 582 times
  • Download rankings, all-time:
    • Site-wide: 15,165 out of 60,233
    • In bioinformatics: 2,405 out of 6,078
  • Year to date:
    • Site-wide: 7,842 out of 60,233
  • Since beginning of last month:
    • Site-wide: 15,101 out of 60,233

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

bioinformatics more details view paper
  • Downloaded 525 times
  • Download rankings, all-time:
    • Site-wide: 17,350 out of 60,233
    • In bioinformatics: 2,651 out of 6,078
  • Year to date:
    • Site-wide: 55,130 out of 60,233
  • Since beginning of last month:
    • Site-wide: 52,004 out of 60,233

Evaluation of computational genotyping of Structural Variations for clinical diagnoses.

bioinformatics more details view paper
  • Downloaded 432 times
  • Download rankings, all-time:
    • Site-wide: 21,892 out of 60,233
    • In bioinformatics: 3,147 out of 6,078
  • Year to date:
    • Site-wide: 5,483 out of 60,233
  • Since beginning of last month:
    • Site-wide: 16,111 out of 60,233

Atlas-CNV: a validated approach to call Single-Exon CNVs in the eMERGESeq gene panel

genomics more details view paper
  • Downloaded 362 times
  • Download rankings, all-time:
    • Site-wide: 26,426 out of 60,233
    • In genomics: 2,728 out of 4,181
  • Year to date:
    • Site-wide: 18,626 out of 60,233
  • Since beginning of last month:
    • Site-wide: 28,381 out of 60,233

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News