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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,900 bioRxiv papers from 321,596 authors.

Author: Fritz J. Sedlazeck

Rankings

  • All-time downloads: 69,254 (rank: 225 out of 321,741)
  • Categories:
    • bioinformatics: 37,497 (rank: 53 out of 27,876)
    • evolutionary biology: 759 (rank: 5,383 (tie) out of 17,084)
    • genetics: 2,087 (rank: 6,630 (tie) out of 31,611)
    • genomics: 28,911 (rank: 213 out of 35,880)

Downloads per author, site-wide

Preprints

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 10,846 times
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    • Site-wide: 125 out of 73,918
    • In genomics: 32 out of 4,893
  • Year to date:
    • Site-wide: 610 out of 73,918
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    • Site-wide: 610 out of 73,918

Targeted Nanopore Sequencing with Cas9 for studies of methylation, structural variants and mutations

genomics more details view paper
  • Downloaded 6,539 times
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    • Site-wide: 314 out of 73,918
    • In genomics: 79 out of 4,893
  • Year to date:
    • Site-wide: 262 out of 73,918
  • Since beginning of last month:
    • Site-wide: 262 out of 73,918

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
  • Downloaded 6,537 times
  • Download rankings, all-time:
    • Site-wide: 315 out of 73,918
    • In bioinformatics: 50 out of 7,187
  • Year to date:
    • Site-wide: 15,191 out of 73,918
  • Since beginning of last month:
    • Site-wide: 15,191 out of 73,918

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 6,049 times
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    • Site-wide: 365 out of 73,918
    • In bioinformatics: 66 out of 7,187
  • Year to date:
    • Site-wide: 246 out of 73,918
  • Since beginning of last month:
    • Site-wide: 246 out of 73,918

Accurate detection of complex structural variations using single molecule sequencing

bioinformatics more details view paper
  • Downloaded 5,456 times
  • Download rankings, all-time:
    • Site-wide: 433 out of 73,918
    • In bioinformatics: 80 out of 7,187
  • Year to date:
    • Site-wide: 7,468 out of 73,918
  • Since beginning of last month:
    • Site-wide: 7,468 out of 73,918

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

bioinformatics more details view paper
  • Downloaded 3,423 times
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    • Site-wide: 1,042 out of 73,918
    • In bioinformatics: 204 out of 7,187
  • Year to date:
    • Site-wide: 8,946 out of 73,918
  • Since beginning of last month:
    • Site-wide: 8,946 out of 73,918

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 3,362 times
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    • Site-wide: 1,078 out of 73,918
    • In genomics: 257 out of 4,893
  • Year to date:
    • Site-wide: 1,210 out of 73,918
  • Since beginning of last month:
    • Site-wide: 1,210 out of 73,918

Fast and accurate reference-guided scaffolding of draft genomes

bioinformatics more details view paper
  • Downloaded 2,906 times
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    • Site-wide: 1,417 out of 73,918
    • In bioinformatics: 279 out of 7,187
  • Year to date:
    • Site-wide: 4,135 out of 73,918
  • Since beginning of last month:
    • Site-wide: 4,135 out of 73,918

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 2,858 times
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    • Site-wide: 1,454 out of 73,918
    • In genomics: 327 out of 4,893
  • Year to date:
    • Site-wide: 2,306 out of 73,918
  • Since beginning of last month:
    • Site-wide: 2,306 out of 73,918

Parliament2: Fast Structural Variant Calling Using Optimized Combinations of Callers

bioinformatics more details view paper
  • Downloaded 2,499 times
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    • Site-wide: 1,863 out of 73,918
    • In bioinformatics: 367 out of 7,187
  • Year to date:
    • Site-wide: 3,561 out of 73,918
  • Since beginning of last month:
    • Site-wide: 3,561 out of 73,918

Detection of GBA missense mutations and other variants using the Oxford Nanopore MinION

genetics more details view paper
  • Downloaded 2,087 times
  • Download rankings, all-time:
    • Site-wide: 2,543 out of 73,918
    • In genetics: 228 out of 4,052
  • Year to date:
    • Site-wide: 22,835 out of 73,918
  • Since beginning of last month:
    • Site-wide: 22,835 out of 73,918

Efficient chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
  • Downloaded 1,936 times
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    • Site-wide: 2,895 out of 73,918
    • In bioinformatics: 574 out of 7,187
  • Year to date:
    • Site-wide: 1,067 out of 73,918
  • Since beginning of last month:
    • Site-wide: 1,067 out of 73,918

xAtlas: Scalable small variant calling across heterogeneous next-generation sequencing experiments

bioinformatics more details view paper
  • Downloaded 1,760 times
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    • Site-wide: 3,407 out of 73,918
    • In bioinformatics: 664 out of 7,187
  • Year to date:
    • Site-wide: 7,906 out of 73,918
  • Since beginning of last month:
    • Site-wide: 7,906 out of 73,918

GenomeScope: Fast reference-free genome profiling from short reads

bioinformatics more details view paper
  • Downloaded 1,581 times
  • Download rankings, all-time:
    • Site-wide: 4,101 out of 73,918
    • In bioinformatics: 810 out of 7,187
  • Year to date:
    • Site-wide: 57,781 out of 73,918
  • Since beginning of last month:
    • Site-wide: 57,781 out of 73,918

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

genomics more details view paper
  • Downloaded 1,558 times
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    • Site-wide: 4,208 out of 73,918
    • In genomics: 750 out of 4,893
  • Year to date:
    • Site-wide: 59,874 out of 73,918
  • Since beginning of last month:
    • Site-wide: 59,874 out of 73,918

Paragraph: A graph-based structural variant genotyper for short-read sequence data

genomics more details view paper
  • Downloaded 1,538 times
  • Download rankings, all-time:
    • Site-wide: 4,310 out of 73,918
    • In genomics: 769 out of 4,893
  • Year to date:
    • Site-wide: 5,303 out of 73,918
  • Since beginning of last month:
    • Site-wide: 5,303 out of 73,918

Comprehensive analysis of structural variants in breast cancer genomes using single molecule sequencing

bioinformatics more details view paper
  • Downloaded 1,452 times
  • Download rankings, all-time:
    • Site-wide: 4,727 out of 73,918
    • In bioinformatics: 908 out of 7,187
  • Year to date:
    • Site-wide: 1,549 out of 73,918
  • Since beginning of last month:
    • Site-wide: 1,549 out of 73,918

Transient structural variations alter gene expression and quantitative traits in Schizosaccharomyces pombe.

genomics more details view paper
  • Downloaded 1,260 times
  • Download rankings, all-time:
    • Site-wide: 5,984 out of 73,918
    • In genomics: 994 out of 4,893
  • Year to date:
    • Site-wide: 32,034 out of 73,918
  • Since beginning of last month:
    • Site-wide: 32,034 out of 73,918

LRSim: a Linked Reads Simulator generating insights for better genome partitioning

bioinformatics more details view paper
  • Downloaded 1,167 times
  • Download rankings, all-time:
    • Site-wide: 6,796 out of 73,918
    • In bioinformatics: 1,247 out of 7,187
  • Year to date:
    • Site-wide: 69,423 out of 73,918
  • Since beginning of last month:
    • Site-wide: 69,423 out of 73,918

SplitThreader: Exploration and analysis of rearrangements in cancer genomes

bioinformatics more details view paper
  • Downloaded 938 times
  • Download rankings, all-time:
    • Site-wide: 9,765 out of 73,918
    • In bioinformatics: 1,662 out of 7,187
  • Year to date:
    • Site-wide: 45,261 out of 73,918
  • Since beginning of last month:
    • Site-wide: 45,261 out of 73,918

Ancestral admixture is the main determinant of global biodiversity in fission yeast

evolutionary biology more details view paper
  • Downloaded 759 times
  • Download rankings, all-time:
    • Site-wide: 13,465 out of 73,918
    • In evolutionary biology: 888 out of 4,771
  • Year to date:
    • Site-wide: 22,793 out of 73,918
  • Since beginning of last month:
    • Site-wide: 22,793 out of 73,918

SVCollector: Optimized sample selection for validating and long-read resequencing of structural variants

bioinformatics more details view paper
  • Downloaded 713 times
  • Download rankings, all-time:
    • Site-wide: 14,803 out of 73,918
    • In bioinformatics: 2,341 out of 7,187
  • Year to date:
    • Site-wide: 25,739 out of 73,918
  • Since beginning of last month:
    • Site-wide: 25,739 out of 73,918

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

bioinformatics more details view paper
  • Downloaded 552 times
  • Download rankings, all-time:
    • Site-wide: 21,296 out of 73,918
    • In bioinformatics: 3,074 out of 7,187
  • Year to date:
    • Site-wide: 70,175 out of 73,918
  • Since beginning of last month:
    • Site-wide: 70,175 out of 73,918

The population genomics of structural variation in a songbird genus

genomics more details view paper
  • Downloaded 534 times
  • Download rankings, all-time:
    • Site-wide: 22,245 out of 73,918
    • In genomics: 2,503 out of 4,893
  • Year to date:
    • Site-wide: 7,075 out of 73,918
  • Since beginning of last month:
    • Site-wide: 7,075 out of 73,918

Evaluation of computational genotyping of Structural Variations for clinical diagnoses.

bioinformatics more details view paper
  • Downloaded 528 times
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    • Site-wide: 22,573 out of 73,918
    • In bioinformatics: 3,207 out of 7,187
  • Year to date:
    • Site-wide: 23,821 out of 73,918
  • Since beginning of last month:
    • Site-wide: 23,821 out of 73,918

Atlas-CNV: a validated approach to call Single-Exon CNVs in the eMERGESeq gene panel

genomics more details view paper
  • Downloaded 416 times
  • Download rankings, all-time:
    • Site-wide: 30,035 out of 73,918
    • In genomics: 3,047 out of 4,893
  • Year to date:
    • Site-wide: 59,792 out of 73,918
  • Since beginning of last month:
    • Site-wide: 59,792 out of 73,918

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