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Author: Serghei Mangul

Rankings

  • All-time downloads: 33,352 (rank: 1,081 out of 359,347)
  • Categories:
    • bioinformatics: 13,706 (rank: 245 out of 31,098)
    • genetics: 5,628 (rank: 2,858 (tie) out of 33,783)
    • genomics: 4,150 (rank: 4,309 (tie) out of 38,920)
    • immunology: 3,861 (rank: 440 (tie) out of 18,441)
    • microbiology: 5,192 (rank: 1,044 out of 39,426)
    • scientific communication and education: 815 (rank: 835 (tie) out of 3,007)

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Preprints

A comprehensive benchmarking of WGS-based structural variant callers

bioinformatics more details view paper

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A comprehensive map of genetic variation in the world's largest ethnic group - Han Chinese

genetics more details view paper
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Challenges and recommendations to improve installability and archival stability of omics computational tools

bioinformatics more details view paper
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Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

immunology more details view paper
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Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia

microbiology more details view paper
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Comprehensive analysis of RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

genomics more details view paper
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UMI-Reducer: Collapsing duplicate sequencing reads via Unique Molecular Identifiers

bioinformatics more details view paper
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PUMA: A tool for processing 16S rRNA taxonomy data for analysis and visualization

microbiology more details view paper
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Cell type specific genetic regulation of gene expression across human tissues

genomics more details view paper
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MiCoP: Microbial Community Profiling method for detecting viral and fungal organisms in metagenomic samples

bioinformatics more details view paper
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Benchmarking of computational error-correction methods for next-generation sequencing data

bioinformatics more details view paper
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    • In bioinformatics: 1,381 out of 7,996
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    • Site-wide: 9,301 out of 83,367

HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads

bioinformatics more details view paper
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Addressing the digital divide in contemporary biology: Lessons from teaching UNIX

scientific communication and education more details view paper
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    • In scientific communication and education: 143 out of 577
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Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

bioinformatics more details view paper
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    • In bioinformatics: 2,303 out of 7,996
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    • Site-wide: 62,078 out of 83,367
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    • Site-wide: 51,615 out of 83,367

Improving the usability and comprehensiveness of microbial databases

bioinformatics more details view paper
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    • In bioinformatics: 2,521 out of 7,996
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    • Site-wide: 19,166 out of 83,367

Reference-free comparison of microbial communities via de Bruijn graphs

bioinformatics more details view paper
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    • In bioinformatics: 2,541 out of 7,996
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    • Site-wide: 54,338 out of 83,367

Metalign: Efficient alignment-based metagenomic profiling via containment min hash

bioinformatics more details view paper
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