Author: Anton Nekrutenko

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Preprints

Practical computational reproducibility in the life sciences

• Downloaded 3,127 times
• Download rankings, all-time:
  • Site-wide: 3,445
  • In bioinformatics: 379
• Year to date:
  • Site-wide: 100,903
• Since beginning of last month:
  • Site-wide: 97,701

No more business as usual: agile and effective responses to emerging pathogen threats require open data and open analytics

• Downloaded 2,270 times
• Download rankings, all-time:
  • Site-wide: 5,474
  • In evolutionary biology: 147
• Year to date:
  • Site-wide: 20,827
• Since beginning of last month:
  • Site-wide: 65,381

Community-driven data analysis training for biology

• Downloaded 1,454 times
• Download rankings, all-time:
  • Site-wide: 10,571
  • In bioinformatics: 1,334
• Year to date:
  • Site-wide: 37,504
• Since beginning of last month:
  • Site-wide: 114,229

Enhancing pre-defined workflows with ad hoc analytics using Galaxy, Docker and Jupyter

• Downloaded 1,307 times
• Download rankings, all-time:
  • Site-wide: 12,439
  • In bioinformatics: 1,564
• Year to date:
  • Site-wide: 56,249
• Since beginning of last month:
  • Site-wide: 82,044

A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework

• Downloaded 1,195 times
• Download rankings, all-time:
  • Site-wide: 14,207
  • In bioinformatics: 1,776
• Year to date:
  • Site-wide: 2,601
• Since beginning of last month:
  • Site-wide: 3,099

Understanding trivial challenges of microbial genomics: An assembly example

• Downloaded 1,149 times
• Download rankings, all-time:
  • Site-wide: 15,063
  • In microbiology: 843
• Year to date:
  • Site-wide: 36,942
• Since beginning of last month:
  • Site-wide: 39,200

The landscape of SARS-CoV-2 RNA modifications

• Downloaded 984 times
• Download rankings, all-time:
  • Site-wide: 19,080
  • In genetics: 968
• Year to date:
  • Site-wide: 8,815
• Since beginning of last month:
  • Site-wide: 7,308

Family reunion via error correction: An efficient analysis of duplex sequencing data

• Downloaded 474 times
• Download rankings, all-time:
  • Site-wide: 50,199
  • In bioinformatics: 5,236
• Year to date:
  • Site-wide: 89,478
• Since beginning of last month:
  • Site-wide: 106,364

Infant Weight Gain Trajectories Linked To Oral Microbiome Composition

• Downloaded 466 times
• Download rankings, all-time:
  • Site-wide: 51,132
  • In genomics: 4,011
• Year to date:
  • Site-wide: 54,472
• Since beginning of last month:
  • Site-wide: 79,834

A high resolution view of adaptive events

• Downloaded 429 times
• Download rankings, all-time:
  • Site-wide: 55,933
  • In evolutionary biology: 3,167
• Year to date:
  • Site-wide: 109,504
• Since beginning of last month:
  • Site-wide: 111,583

Increased yields of duplex sequencing data by a series of quality control tools

• Downloaded 377 times
• Download rankings, all-time:
  • Site-wide: 63,550
  • In genomics: 4,579
• Year to date:
  • Site-wide: 71,689
• Since beginning of last month:
  • Site-wide: 94,640

Reproducible and accessible analysis of transposon insertion data at scale

• Downloaded 265 times
• Download rankings, all-time:
  • Site-wide: 83,941
  • In microbiology: 6,003
• Year to date:
  • Site-wide: 23,257
• Since beginning of last month:
  • Site-wide: 32,600