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Author: Anton Nekrutenko

  • ORCiD: http://orcid.org/0000-0002-5987-8032
  • Most recently observed institution: Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park

Rankings

  • All-time downloads: 13,497 (rank: 11,935 (tie) )
  • Categories:
    • bioinformatics: 7,557 (rank: 1,134 (tie) )
    • evolutionary biology: 2,699 (rank: 1,430 )
    • genetics: 984 (rank: 14,916 (tie) )
    • genomics: 843 (rank: 23,310 (tie) )
    • microbiology: 1,414 (rank: 8,550 )

Downloads per author, site-wide

Preprints

Practical computational reproducibility in the life sciences

bioinformatics more details view paper
  • Downloaded 3,127 times
  • Download rankings, all-time:
    • Site-wide: 3,445
    • In bioinformatics: 379
  • Year to date:
    • Site-wide: 100,903
  • Since beginning of last month:
    • Site-wide: 97,701

No more business as usual: agile and effective responses to emerging pathogen threats require open data and open analytics

evolutionary biology more details view paper
  • Downloaded 2,270 times
  • Download rankings, all-time:
    • Site-wide: 5,474
    • In evolutionary biology: 147
  • Year to date:
    • Site-wide: 20,827
  • Since beginning of last month:
    • Site-wide: 65,381

Community-driven data analysis training for biology

bioinformatics more details view paper
  • Downloaded 1,454 times
  • Download rankings, all-time:
    • Site-wide: 10,571
    • In bioinformatics: 1,334
  • Year to date:
    • Site-wide: 37,504
  • Since beginning of last month:
    • Site-wide: 114,229

Enhancing pre-defined workflows with ad hoc analytics using Galaxy, Docker and Jupyter

bioinformatics more details view paper
  • Downloaded 1,307 times
  • Download rankings, all-time:
    • Site-wide: 12,439
    • In bioinformatics: 1,564
  • Year to date:
    • Site-wide: 56,249
  • Since beginning of last month:
    • Site-wide: 82,044

A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework

bioinformatics more details view paper
  • Downloaded 1,195 times
  • Download rankings, all-time:
    • Site-wide: 14,207
    • In bioinformatics: 1,776
  • Year to date:
    • Site-wide: 2,601
  • Since beginning of last month:
    • Site-wide: 3,099

Understanding trivial challenges of microbial genomics: An assembly example

microbiology more details view paper
  • Downloaded 1,149 times
  • Download rankings, all-time:
    • Site-wide: 15,063
    • In microbiology: 843
  • Year to date:
    • Site-wide: 36,942
  • Since beginning of last month:
    • Site-wide: 39,200

The landscape of SARS-CoV-2 RNA modifications

genetics more details view paper
  • Downloaded 984 times
  • Download rankings, all-time:
    • Site-wide: 19,080
    • In genetics: 968
  • Year to date:
    • Site-wide: 8,815
  • Since beginning of last month:
    • Site-wide: 7,308

Family reunion via error correction: An efficient analysis of duplex sequencing data

bioinformatics more details view paper
  • Downloaded 474 times
  • Download rankings, all-time:
    • Site-wide: 50,199
    • In bioinformatics: 5,236
  • Year to date:
    • Site-wide: 89,478
  • Since beginning of last month:
    • Site-wide: 106,364

Infant Weight Gain Trajectories Linked To Oral Microbiome Composition

genomics more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 51,132
    • In genomics: 4,011
  • Year to date:
    • Site-wide: 54,472
  • Since beginning of last month:
    • Site-wide: 79,834

A high resolution view of adaptive events

evolutionary biology more details view paper
  • Downloaded 429 times
  • Download rankings, all-time:
    • Site-wide: 55,933
    • In evolutionary biology: 3,167
  • Year to date:
    • Site-wide: 109,504
  • Since beginning of last month:
    • Site-wide: 111,583

Increased yields of duplex sequencing data by a series of quality control tools

genomics more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 63,550
    • In genomics: 4,579
  • Year to date:
    • Site-wide: 71,689
  • Since beginning of last month:
    • Site-wide: 94,640

Reproducible and accessible analysis of transposon insertion data at scale

microbiology more details view paper
  • Downloaded 265 times
  • Download rankings, all-time:
    • Site-wide: 83,941
    • In microbiology: 6,003
  • Year to date:
    • Site-wide: 23,257
  • Since beginning of last month:
    • Site-wide: 32,600

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