Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,113 bioRxiv papers from 295,324 authors.

Author: Lior Pachter

Rankings

  • All-time downloads: 69,132 (rank: 173 out of 295,131)
  • Categories:
    • bioengineering: 3,076 (rank: 142 (tie) out of 7,476)
    • bioinformatics: 41,359 (rank: 46 out of 25,701)
    • genomics: 24,697 (rank: 251 out of 33,598)

Downloads per author, site-wide

Preprints

Highly Multiplexed Single-Cell RNA-seq for Defining Cell Population and Transcriptional Spaces

genomics more details view paper
  • Downloaded 8,720 times
  • Download rankings, all-time:
    • Site-wide: 157 out of 67,044
    • In genomics: 48 out of 4,558
  • Year to date:
    • Site-wide: 325 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,035 out of 67,044

Differential analysis of RNA-Seq incorporating quantification uncertainty

bioinformatics more details view paper
  • Downloaded 7,760 times
  • Download rankings, all-time:
    • Site-wide: 195 out of 67,044
    • In bioinformatics: 31 out of 6,614
  • Year to date:
    • Site-wide: 2,214 out of 67,044
  • Since beginning of last month:
    • Site-wide: 4,691 out of 67,044

Identification of transcriptional signatures for cell types from single-cell RNA-Seq

bioinformatics more details view paper
  • Downloaded 6,105 times
  • Download rankings, all-time:
    • Site-wide: 310 out of 67,044
    • In bioinformatics: 54 out of 6,614
  • Year to date:
    • Site-wide: 1,006 out of 67,044
  • Since beginning of last month:
    • Site-wide: 4,034 out of 67,044

Fast and accurate single-cell RNA-Seq analysis by clustering of transcript-compatibility counts

genomics more details view paper
  • Downloaded 4,888 times
  • Download rankings, all-time:
    • Site-wide: 452 out of 67,044
    • In genomics: 118 out of 4,558
  • Year to date:
    • Site-wide: 10,660 out of 67,044
  • Since beginning of last month:
    • Site-wide: 15,898 out of 67,044

Modular and efficient pre-processing of single-cell RNA-seq

bioinformatics more details view paper
  • Downloaded 4,843 times
  • Download rankings, all-time:
    • Site-wide: 465 out of 67,044
    • In bioinformatics: 92 out of 6,614
  • Year to date:
    • Site-wide: 97 out of 67,044
  • Since beginning of last month:
    • Site-wide: 188 out of 67,044

Shannon: An Information-Optimal de Novo RNA-Seq Assembler

genomics more details view paper
  • Downloaded 3,530 times
  • Download rankings, all-time:
    • Site-wide: 859 out of 67,044
    • In genomics: 220 out of 4,558
  • Year to date:
    • Site-wide: 12,010 out of 67,044
  • Since beginning of last month:
    • Site-wide: 14,858 out of 67,044

Design principles for open source bioinstrumentation: the poseidon syringe pump system as an example

bioengineering more details view paper
  • Downloaded 3,076 times
  • Download rankings, all-time:
    • Site-wide: 1,125 out of 67,044
    • In bioengineering: 14 out of 1,345
  • Year to date:
    • Site-wide: 230 out of 67,044
  • Since beginning of last month:
    • Site-wide: 8,219 out of 67,044

Association Mapping From Sequencing Reads Using K-mers

bioinformatics more details view paper
  • Downloaded 2,766 times
  • Download rankings, all-time:
    • Site-wide: 1,362 out of 67,044
    • In bioinformatics: 272 out of 6,614
  • Year to date:
    • Site-wide: 15,642 out of 67,044
  • Since beginning of last month:
    • Site-wide: 26,271 out of 67,044

A curated database reveals trends in single-cell transcriptomics

genomics more details view paper
  • Downloaded 2,551 times
  • Download rankings, all-time:
    • Site-wide: 1,559 out of 67,044
    • In genomics: 351 out of 4,558
  • Year to date:
    • Site-wide: 318 out of 67,044
  • Since beginning of last month:
    • Site-wide: 347 out of 67,044

Interpretable factor models of single-cell RNA-seq via variational autoencoders

bioinformatics more details view paper
  • Downloaded 2,505 times
  • Download rankings, all-time:
    • Site-wide: 1,618 out of 67,044
    • In bioinformatics: 321 out of 6,614
  • Year to date:
    • Site-wide: 333 out of 67,044
  • Since beginning of last month:
    • Site-wide: 523 out of 67,044

RNA velocity and protein acceleration from single-cell multiomics experiments

bioinformatics more details view paper
  • Downloaded 2,265 times
  • Download rankings, all-time:
    • Site-wide: 1,952 out of 67,044
    • In bioinformatics: 398 out of 6,614
  • Year to date:
    • Site-wide: 423 out of 67,044
  • Since beginning of last month:
    • Site-wide: 3,480 out of 67,044

Barcode identification for single cell genomics

bioinformatics more details view paper
  • Downloaded 2,245 times
  • Download rankings, all-time:
    • Site-wide: 1,980 out of 67,044
    • In bioinformatics: 404 out of 6,614
  • Year to date:
    • Site-wide: 9,759 out of 67,044
  • Since beginning of last month:
    • Site-wide: 18,740 out of 67,044

Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq

genomics more details view paper
  • Downloaded 2,124 times
  • Download rankings, all-time:
    • Site-wide: 2,188 out of 67,044
    • In genomics: 465 out of 4,558
  • Year to date:
    • Site-wide: 475 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,566 out of 67,044

Gene-level differential analysis at transcript-level resolution

bioinformatics more details view paper
  • Downloaded 2,049 times
  • Download rankings, all-time:
    • Site-wide: 2,330 out of 67,044
    • In bioinformatics: 474 out of 6,614
  • Year to date:
    • Site-wide: 20,403 out of 67,044
  • Since beginning of last month:
    • Site-wide: 22,689 out of 67,044

Fusion detection and quantification by pseudoalignment

bioinformatics more details view paper
  • Downloaded 2,043 times
  • Download rankings, all-time:
    • Site-wide: 2,345 out of 67,044
    • In bioinformatics: 477 out of 6,614
  • Year to date:
    • Site-wide: 4,344 out of 67,044
  • Since beginning of last month:
    • Site-wide: 9,168 out of 67,044

The Barcode, UMI, Set format and BUStools

bioinformatics more details view paper
  • Downloaded 1,835 times
  • Download rankings, all-time:
    • Site-wide: 2,800 out of 67,044
    • In bioinformatics: 559 out of 6,614
  • Year to date:
    • Site-wide: 2,178 out of 67,044
  • Since beginning of last month:
    • Site-wide: 8,847 out of 67,044

A direct comparison of genome alignment and transcriptome pseudoalignment

bioinformatics more details view paper
  • Downloaded 1,641 times
  • Download rankings, all-time:
    • Site-wide: 3,373 out of 67,044
    • In bioinformatics: 670 out of 6,614
  • Year to date:
    • Site-wide: 2,049 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,235 out of 67,044

Expression reflects population structure

genomics more details view paper
  • Downloaded 1,192 times
  • Download rankings, all-time:
    • Site-wide: 5,770 out of 67,044
    • In genomics: 974 out of 4,558
  • Year to date:
    • Site-wide: 39,637 out of 67,044
  • Since beginning of last month:
    • Site-wide: 44,782 out of 67,044

Compositional Data Analysis is necessary for simulating and analyzing RNA-Seq data

bioinformatics more details view paper
  • Downloaded 1,136 times
  • Download rankings, all-time:
    • Site-wide: 6,255 out of 67,044
    • In bioinformatics: 1,168 out of 6,614
  • Year to date:
    • Site-wide: 1,550 out of 67,044
  • Since beginning of last month:
    • Site-wide: 6,069 out of 67,044

Zika infection of neural progenitor cells perturbs transcription in neurodevelopmental pathways

bioinformatics more details view paper
  • Downloaded 1,129 times
  • Download rankings, all-time:
    • Site-wide: 6,309 out of 67,044
    • In bioinformatics: 1,178 out of 6,614
  • Year to date:
    • Site-wide: 53,265 out of 67,044
  • Since beginning of last month:
    • Site-wide: 59,842 out of 67,044

SWALO: scaffolding with assembly likelihood optimization

bioinformatics more details view paper
  • Downloaded 1,100 times
  • Download rankings, all-time:
    • Site-wide: 6,611 out of 67,044
    • In bioinformatics: 1,220 out of 6,614
  • Year to date:
    • Site-wide: 41,194 out of 67,044
  • Since beginning of last month:
    • Site-wide: 24,288 out of 67,044

Column subset selection for single-cell RNA-Seq clustering

bioinformatics more details view paper
  • Downloaded 986 times
  • Download rankings, all-time:
    • Site-wide: 7,876 out of 67,044
    • In bioinformatics: 1,397 out of 6,614
  • Year to date:
    • Site-wide: 51,983 out of 67,044
  • Since beginning of last month:
    • Site-wide: 56,824 out of 67,044

The Lair: A resource for exploratory analysis of published RNA-Seq data

bioinformatics more details view paper
  • Downloaded 951 times
  • Download rankings, all-time:
    • Site-wide: 8,361 out of 67,044
    • In bioinformatics: 1,463 out of 6,614
  • Year to date:
    • Site-wide: 61,510 out of 67,044
  • Since beginning of last month:
    • Site-wide: 64,124 out of 67,044

Prober: A general toolkit for analyzing sequencing-based 'toeprinting' assays

genomics more details view paper
  • Downloaded 884 times
  • Download rankings, all-time:
    • Site-wide: 9,361 out of 67,044
    • In genomics: 1,417 out of 4,558
  • Year to date:
    • Site-wide: 52,560 out of 67,044
  • Since beginning of last month:
    • Site-wide: 37,796 out of 67,044

Accurate design of translational output by a neural network model of ribosome distribution

genomics more details view paper
  • Downloaded 808 times
  • Download rankings, all-time:
    • Site-wide: 10,781 out of 67,044
    • In genomics: 1,569 out of 4,558
  • Year to date:
    • Site-wide: 59,958 out of 67,044
  • Since beginning of last month:
    • Site-wide: 61,458 out of 67,044

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News