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Author: Bing Ren

Rankings

  • All-time downloads: 128,204 (rank: 1,131 )
  • Categories:
    • biochemistry: 1,168 (rank: 5,985 (tie) )
    • bioinformatics: 16,517 (rank: 482 )
    • cancer biology: 757 (rank: 16,322 (tie) )
    • cell biology: 1,555 (rank: 6,596 (tie) )
    • developmental biology: 2,383 (rank: 1,595 (tie) )
    • genetic and genomic medicine: 1,197 (rank: 4,292 (tie) )
    • genetics: 761 (rank: 22,695 (tie) )
    • genomics: 71,062 (rank: 142 )
    • molecular biology: 2,077 (rank: 3,060 (tie) )
    • neuroscience: 27,059 (rank: 252 )
    • pathology: 2,830 (rank: 519 (tie) )
    • systems biology: 838 (rank: 6,554 (tie) )

Downloads per author, site-wide

Preprints

SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

bioinformatics more details view paper
  • Downloaded 9,928 times
  • Download rankings, all-time:
    • Site-wide: 1,165
    • In bioinformatics: 53
  • Year to date:
    • Site-wide: 36,624
  • Since beginning of last month:
    • Site-wide: 12,553

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 8,505 times
  • Download rankings, all-time:
    • Site-wide: 1,410
    • In genomics: 102
  • Year to date:
    • Site-wide: 36,411
  • Since beginning of last month:
    • Site-wide: 24,679

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 6,922 times
  • Download rankings, all-time:
    • Site-wide: 1,808
    • In neuroscience: 82
  • Year to date:
    • Site-wide: 62,671
  • Since beginning of last month:
    • Site-wide: 7,851

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

neuroscience more details view paper
  • Downloaded 6,851 times
  • Download rankings, all-time:
    • Site-wide: 1,838
    • In neuroscience: 86
  • Year to date:
    • Site-wide: 7,290
  • Since beginning of last month:
    • Site-wide: 8,134

Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells

genomics more details view paper
  • Downloaded 5,307 times
  • Download rankings, all-time:
    • Site-wide: 2,606
    • In genomics: 224
  • Year to date:
    • Site-wide: 99,953
  • Since beginning of last month:
    • Site-wide: 33,371

Single nucleus analysis of the chromatin landscape in mouse forebrain development

genomics more details view paper
  • Downloaded 5,264 times
  • Download rankings, all-time:
    • Site-wide: 2,638
    • In genomics: 229
  • Year to date:
    • Site-wide: 58,982
  • Since beginning of last month:
    • Site-wide: 101,008

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 5,119 times
  • Download rankings, all-time:
    • Site-wide: 2,758
    • In neuroscience: 153
  • Year to date:
    • Site-wide: 116,684
  • Since beginning of last month:
    • Site-wide: 7,862

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

neuroscience more details view paper
  • Downloaded 4,922 times
  • Download rankings, all-time:
    • Site-wide: 2,906
    • In neuroscience: 170
  • Year to date:
    • Site-wide: 30,722
  • Since beginning of last month:
    • Site-wide: 39,727

Systematic mapping of chromatin state landscapes during mouse development

genomics more details view paper
  • Downloaded 4,920 times
  • Download rankings, all-time:
    • Site-wide: 2,908
    • In genomics: 264
  • Year to date:
    • Site-wide: 72,566
  • Since beginning of last month:
    • Site-wide: 37,983

DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

genomics more details view paper
  • Downloaded 4,697 times
  • Download rankings, all-time:
    • Site-wide: 3,083
    • In genomics: 284
  • Year to date:
    • Site-wide: 13,727
  • Since beginning of last month:
    • Site-wide: 73,358

Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

genomics more details view paper
  • Downloaded 4,383 times
  • Download rankings, all-time:
    • Site-wide: 3,396
    • In genomics: 322
  • Year to date:
    • Site-wide: 2,740
  • Since beginning of last month:
    • Site-wide: 7,331

A cell atlas of chromatin accessibility across 25 adult human tissues

genomics more details view paper
  • Downloaded 4,000 times
  • Download rankings, all-time:
    • Site-wide: 3,835
    • In genomics: 372
  • Year to date:
    • Site-wide: 3,408
  • Since beginning of last month:
    • Site-wide: 5,496

3D Chromatin Architecture Remodeling during Human Cardiomyocyte Differentiation Reveals A Role Of HERV-H In Demarcating Chromatin Domains

genomics more details view paper
  • Downloaded 3,317 times
  • Download rankings, all-time:
    • Site-wide: 4,999
    • In genomics: 481
  • Year to date:
    • Site-wide: 45,699
  • Since beginning of last month:
    • Site-wide: 69,613

The 4D Nucleome Project

genomics more details view paper
  • Downloaded 3,249 times
  • Download rankings, all-time:
    • Site-wide: 5,145
    • In genomics: 494
  • Year to date:
    • Site-wide: 78,741
  • Since beginning of last month:
    • Site-wide: 95,064

Cell type-specific enhancer-promoter connectivity maps in the human brain and disease risk association

neuroscience more details view paper
  • Downloaded 3,245 times
  • Download rankings, all-time:
    • Site-wide: 5,156
    • In neuroscience: 404
  • Year to date:
    • Site-wide: 148,872
  • Since beginning of last month:
    • Site-wide: 107,932

MAPPING OF LONG-RANGE CHROMATIN INTERACTIONS BY PROXIMITY LIGATION ASSISTED CHIP-SEQ

genomics more details view paper
  • Downloaded 3,008 times
  • Download rankings, all-time:
    • Site-wide: 5,755
    • In genomics: 564
  • Year to date:
    • Site-wide: 57,041
  • Since beginning of last month:
    • Site-wide: 100,563

Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

genomics more details view paper
  • Downloaded 2,668 times
  • Download rankings, all-time:
    • Site-wide: 6,838
    • In genomics: 669
  • Year to date:
    • Site-wide: 36,608
  • Since beginning of last month:
    • Site-wide: 51,217

Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

genomics more details view paper
  • Downloaded 2,605 times
  • Download rankings, all-time:
    • Site-wide: 7,081
    • In genomics: 701
  • Year to date:
    • Site-wide: 105,811
  • Since beginning of last month:
    • Site-wide: 33,609

A Large-Scale Internal Validation Study of Unsupervised Virtual Trichrome Staining Technologies on Non-alcoholic Steatohepatitis Liver Biopsies

pathology more details view paper
  • Downloaded 2,481 times
  • Download rankings, all-time:
    • Site-wide: 7,596
    • In pathology: 45
  • Year to date:
    • Site-wide: 86,224
  • Since beginning of last month:
    • Site-wide: 73,060

The human functional genome defined by genetic diversity

genomics more details view paper
  • Downloaded 2,258 times
  • Download rankings, all-time:
    • Site-wide: 8,742
    • In genomics: 858
  • Year to date:
    • Site-wide: 100,005
  • Since beginning of last month:
    • Site-wide: 82,182

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

molecular biology more details view paper
  • Downloaded 2,077 times
  • Download rankings, all-time:
    • Site-wide: 9,840
    • In molecular biology: 242
  • Year to date:
    • Site-wide: 40,271
  • Since beginning of last month:
    • Site-wide: 43,358

The changing mouse embryo transcriptome at whole tissue and single-cell resolution

developmental biology more details view paper
  • Downloaded 2,040 times
  • Download rankings, all-time:
    • Site-wide: 10,113
    • In developmental biology: 127
  • Year to date:
    • Site-wide: 124,246
  • Since beginning of last month:
    • Site-wide: 110,580

Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

genomics more details view paper
  • Downloaded 1,963 times
  • Download rankings, all-time:
    • Site-wide: 10,721
    • In genomics: 1,036
  • Year to date:
    • Site-wide: 99,898
  • Since beginning of last month:
    • Site-wide: 124,207

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

genomics more details view paper
  • Downloaded 1,886 times
  • Download rankings, all-time:
    • Site-wide: 11,393
    • In genomics: 1,107
  • Year to date:
    • Site-wide: 127,780
  • Since beginning of last month:
    • Site-wide: 30,170

Comparing 3D genome organization in multiple species using Phylo-HMRF

bioinformatics more details view paper
  • Downloaded 1,760 times
  • Download rankings, all-time:
    • Site-wide: 12,610
    • In bioinformatics: 1,379
  • Year to date:
    • Site-wide: 106,950
  • Since beginning of last month:
    • Site-wide: 101,574

Cardiac Cell Type-Specific Gene Regulatory Programs and Disease Risk Association

genomics more details view paper
  • Downloaded 1,755 times
  • Download rankings, all-time:
    • Site-wide: 12,667
    • In genomics: 1,236
  • Year to date:
    • Site-wide: 50,622
  • Since beginning of last month:
    • Site-wide: 84,921

Pancreatic islet chromatin accessibility and conformation defines distal enhancer networks of type 2 diabetes risk

genomics more details view paper
  • Downloaded 1,651 times
  • Download rankings, all-time:
    • Site-wide: 13,853
    • In genomics: 1,340
  • Year to date:
    • Site-wide: 133,359
  • Since beginning of last month:
    • Site-wide: 126,113

Three-dimensional organization of chromatin associated RNAs and their role in chromatin architecture in human cells

genomics more details view paper
  • Downloaded 1,642 times
  • Download rankings, all-time:
    • Site-wide: 13,980
    • In genomics: 1,353
  • Year to date:
    • Site-wide: 3,380
  • Since beginning of last month:
    • Site-wide: 5,259

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,537 times
  • Download rankings, all-time:
    • Site-wide: 15,518
    • In genomics: 1,486
  • Year to date:
    • Site-wide: 134,302
  • Since beginning of last month:
    • Site-wide: 98,294

Single-cell chromatin accessibility analysis of mammary gland development reveals cell state transcriptional regulators and cellular lineage relationships

genomics more details view paper
  • Downloaded 1,533 times
  • Download rankings, all-time:
    • Site-wide: 15,586
    • In genomics: 1,493
  • Year to date:
    • Site-wide: 136,506
  • Since beginning of last month:
    • Site-wide: 100,046

Identification of essential regulatory elements in the human genome

genomics more details view paper
  • Downloaded 1,489 times
  • Download rankings, all-time:
    • Site-wide: 16,282
    • In genomics: 1,557
  • Year to date:
    • Site-wide: 105,388
  • Since beginning of last month:
    • Site-wide: 105,064

Iterative Refinement of Cellular Identity from Single-Cell Data Using Online Learning

bioinformatics more details view paper
  • Downloaded 1,429 times
  • Download rankings, all-time:
    • Site-wide: 17,348
    • In bioinformatics: 1,932
  • Year to date:
    • Site-wide: 111,801
  • Since beginning of last month:
    • Site-wide: 64,661

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,292 times
  • Download rankings, all-time:
    • Site-wide: 20,168
    • In bioinformatics: 2,250
  • Year to date:
    • Site-wide: 149,911
  • Since beginning of last month:
    • Site-wide: 41,088

Genome-wide association and multi-omic analyses reveal new mechanisms for Heart Failure

genetic and genomic medicine more details view paper
  • Downloaded 1,197 times
  • Download rankings, all-time:
    • Site-wide: 22,680
    • In genetic and genomic medicine: 109
  • Year to date:
    • Site-wide: 30,818
  • Since beginning of last month:
    • Site-wide: 33,040

LSD1/KDM1A Maintains Genome-wide Homeostasis of Transcriptional Enhancers

biochemistry more details view paper
  • Downloaded 1,168 times
  • Download rankings, all-time:
    • Site-wide: 23,532
    • In biochemistry: 524
  • Year to date:
    • Site-wide: 100,689
  • Since beginning of last month:
    • Site-wide: 68,146

Parallel Characterization of cis-Regulatory Elements for Multiple Genes Using CRISPRpath

genomics more details view paper
  • Downloaded 937 times
  • Download rankings, all-time:
    • Site-wide: 32,736
    • In genomics: 2,736
  • Year to date:
    • Site-wide: 33,788
  • Since beginning of last month:
    • Site-wide: 46,382

DNA replication-mediated error correction of ectopic CENP-A deposition maintains centromere identity

cell biology more details view paper
  • Downloaded 913 times
  • Download rankings, all-time:
    • Site-wide: 33,989
    • In cell biology: 1,293
  • Year to date:
    • Site-wide: 149,040
  • Since beginning of last month:
    • Site-wide: 146,644

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

bioinformatics more details view paper
  • Downloaded 845 times
  • Download rankings, all-time:
    • Site-wide: 38,040
    • In bioinformatics: 4,030
  • Year to date:
    • Site-wide: 41,234
  • Since beginning of last month:
    • Site-wide: 75,241

An Array of 60,000 Antibodies for Proteome-Scale Antibody Generation and Target Discovery

systems biology more details view paper
  • Downloaded 838 times
  • Download rankings, all-time:
    • Site-wide: 38,531
    • In systems biology: 774
  • Year to date:
    • Site-wide: 80,342
  • Since beginning of last month:
    • Site-wide: 149,846

Multi-tissue integrative analysis of personal epigenomes

genomics more details view paper
  • Downloaded 837 times
  • Download rankings, all-time:
    • Site-wide: 38,615
    • In genomics: 3,117
  • Year to date:
    • Site-wide: 14,617
  • Since beginning of last month:
    • Site-wide: 13,821

A dual mechanism of enhancer activation by FOXA pioneer factors induces endodermal organ fates

genomics more details view paper
  • Downloaded 783 times
  • Download rankings, all-time:
    • Site-wide: 42,445
    • In genomics: 3,338
  • Year to date:
    • Site-wide: 19,909
  • Since beginning of last month:
    • Site-wide: 35,744

HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
  • Downloaded 761 times
  • Download rankings, all-time:
    • Site-wide: 44,272
    • In genetics: 1,876
  • Year to date:
    • Site-wide: 80,112
  • Since beginning of last month:
    • Site-wide: 155,751

Discovery and Functional Characterization of Pro-growth Enhancers in Human Cancer Cells

cancer biology more details view paper
  • Downloaded 757 times
  • Download rankings, all-time:
    • Site-wide: 44,586
    • In cancer biology: 1,224
  • Year to date:
    • Site-wide: 14,811
  • Since beginning of last month:
    • Site-wide: 16,378

Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes

bioinformatics more details view paper
  • Downloaded 659 times
  • Download rankings, all-time:
    • Site-wide: 53,957
    • In bioinformatics: 5,358
  • Year to date:
    • Site-wide: 18,549
  • Since beginning of last month:
    • Site-wide: 6,411

MLL3/MLL4 Histone Methyltranferase Activity Dependent Chromatin Organization at Enhancers during Embryonic Stem Cell Differentiation

cell biology more details view paper
  • Downloaded 642 times
  • Download rankings, all-time:
    • Site-wide: 56,012
    • In cell biology: 2,416
  • Year to date:
    • Site-wide: 24,416
  • Since beginning of last month:
    • Site-wide: 36,792

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 604 times
  • Download rankings, all-time:
    • Site-wide: 60,541
    • In bioinformatics: 5,900
  • Year to date:
    • Site-wide: 136,281
  • Since beginning of last month:
    • Site-wide: 122,220

Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development

genomics more details view paper
  • Downloaded 536 times
  • Download rankings, all-time:
    • Site-wide: 70,052
    • In genomics: 4,816
  • Year to date:
    • Site-wide: 125,347
  • Since beginning of last month:
    • Site-wide: 164,838

A β-catenin-driven switch in TCF/LEF transcription factor binding to DNA target sites promotes commitment of mammalian nephron progenitor cells

developmental biology more details view paper
  • Downloaded 343 times
  • Download rankings, all-time:
    • Site-wide: 109,608
    • In developmental biology: 2,953
  • Year to date:
    • Site-wide: 116,784
  • Since beginning of last month:
    • Site-wide: 138,229

Type 1 diabetes risk genes mediate pancreatic beta cell survival in response to proinflammatory cytokines

genomics more details view paper
  • Downloaded 332 times
  • Download rankings, all-time:
    • Site-wide: 112,572
    • In genomics: 6,479
  • Year to date:
    • Site-wide: 22,550
  • Since beginning of last month:
    • Site-wide: 6,211

Bridge Category Models: Development of Bayesian Modelling Procedures to Account for Bridge Ordinal Ratings for Disease Staging

pathology more details view paper
  • Downloaded 205 times
  • Download rankings, all-time:
    • Site-wide: 146,196
    • In pathology: 865
  • Year to date:
    • Site-wide: 70,426
  • Since beginning of last month:
    • Site-wide: 8,956

Estimating the Inter- and Intra-Rater Reliability for NASH Fibrosis Staging in the Presence of Bridge Ordinal Ratings with Hierarchical Bridge Category Models

pathology more details view paper
  • Downloaded 85 times
  • Download rankings, all-time:
    • Site-wide: 168,384
    • In pathology: 1,044
  • Year to date:
    • Site-wide: 42,535
  • Since beginning of last month:
    • Site-wide: 22,010

Improving the Virtual Trichrome Assessment through Bridge Category Models

pathology more details view paper
  • Downloaded 59 times
  • Download rankings, all-time:
    • Site-wide: 170,428
    • In pathology: 1,058
  • Year to date:
    • Site-wide: 93,878
  • Since beginning of last month:
    • Site-wide: 23,785

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