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Author: Bing Ren

Rankings

  • All-time downloads: 100,363 (rank: 1,113 )
  • Categories:
    • biochemistry: 1,032 (rank: 4,331 (tie) )
    • bioinformatics: 13,673 (rank: 429 )
    • cancer biology: 248 (rank: 26,031 (tie) )
    • cell biology: 806 (rank: 10,251 (tie) )
    • developmental biology: 2,004 (rank: 1,344 )
    • genetic and genomic medicine: 974 (rank: 1,870 (tie) )
    • genetics: 730 (rank: 19,165 (tie) )
    • genomics: 58,529 (rank: 127 )
    • molecular biology: 1,520 (rank: 3,130 (tie) )
    • neuroscience: 18,674 (rank: 318 )
    • pathology: 1,421 (rank: 733 (tie) )
    • systems biology: 752 (rank: 5,534 (tie) )

Downloads per author, site-wide

Preprints

SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

bioinformatics more details view paper
  • Downloaded 8,792 times
  • Download rankings, all-time:
    • Site-wide: 893
    • In bioinformatics: 50
  • Year to date:
    • Site-wide: 994
  • Since beginning of last month:
    • Site-wide: 812

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 8,336 times
  • Download rankings, all-time:
    • Site-wide: 948
    • In genomics: 84
  • Year to date:
    • Site-wide: 45,835
  • Since beginning of last month:
    • Site-wide: None

Single nucleus analysis of the chromatin landscape in mouse forebrain development

genomics more details view paper
  • Downloaded 5,122 times
  • Download rankings, all-time:
    • Site-wide: 1,796
    • In genomics: 183
  • Year to date:
    • Site-wide: 32,100
  • Since beginning of last month:
    • Site-wide: 29,895

Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells

genomics more details view paper
  • Downloaded 5,074 times
  • Download rankings, all-time:
    • Site-wide: 1,811
    • In genomics: 186
  • Year to date:
    • Site-wide: 36,164
  • Since beginning of last month:
    • Site-wide: None

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 4,808 times
  • Download rankings, all-time:
    • Site-wide: 1,963
    • In neuroscience: 114
  • Year to date:
    • Site-wide: 1,397
  • Since beginning of last month:
    • Site-wide: 1,743

Systematic mapping of chromatin state landscapes during mouse development

genomics more details view paper
  • Downloaded 4,582 times
  • Download rankings, all-time:
    • Site-wide: 2,107
    • In genomics: 231
  • Year to date:
    • Site-wide: 19,821
  • Since beginning of last month:
    • Site-wide: 14,482

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

neuroscience more details view paper
  • Downloaded 4,316 times
  • Download rankings, all-time:
    • Site-wide: 2,291
    • In neuroscience: 150
  • Year to date:
    • Site-wide: 1,436
  • Since beginning of last month:
    • Site-wide: 1,183

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

neuroscience more details view paper
  • Downloaded 3,613 times
  • Download rankings, all-time:
    • Site-wide: 2,966
    • In neuroscience: 228
  • Year to date:
    • Site-wide: 1,928
  • Since beginning of last month:
    • Site-wide: 2,034

DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

genomics more details view paper
  • Downloaded 3,487 times
  • Download rankings, all-time:
    • Site-wide: 3,127
    • In genomics: 360
  • Year to date:
    • Site-wide: 2,227
  • Since beginning of last month:
    • Site-wide: 2,105

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 3,265 times
  • Download rankings, all-time:
    • Site-wide: 3,442
    • In neuroscience: 280
  • Year to date:
    • Site-wide: 1,475
  • Since beginning of last month:
    • Site-wide: 1,840

The 4D Nucleome Project

genomics more details view paper
  • Downloaded 3,137 times
  • Download rankings, all-time:
    • Site-wide: 3,650
    • In genomics: 420
  • Year to date:
    • Site-wide: 64,667
  • Since beginning of last month:
    • Site-wide: 37,971

Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

genomics more details view paper
  • Downloaded 3,114 times
  • Download rankings, all-time:
    • Site-wide: 3,689
    • In genomics: 428
  • Year to date:
    • Site-wide: 3,121
  • Since beginning of last month:
    • Site-wide: 2,734

3D Chromatin Architecture Remodeling during Human Cardiomyocyte Differentiation Reveals A Role Of HERV-H In Demarcating Chromatin Domains

genomics more details view paper
  • Downloaded 3,012 times
  • Download rankings, all-time:
    • Site-wide: 3,832
    • In genomics: 447
  • Year to date:
    • Site-wide: 22,734
  • Since beginning of last month:
    • Site-wide: 19,468

MAPPING OF LONG-RANGE CHROMATIN INTERACTIONS BY PROXIMITY LIGATION ASSISTED CHIP-SEQ

genomics more details view paper
  • Downloaded 2,852 times
  • Download rankings, all-time:
    • Site-wide: 4,128
    • In genomics: 480
  • Year to date:
    • Site-wide: 37,381
  • Since beginning of last month:
    • Site-wide: 29,494

Cell type-specific enhancer-promoter connectivity maps in the human brain and disease risk association

neuroscience more details view paper
  • Downloaded 2,672 times
  • Download rankings, all-time:
    • Site-wide: 4,572
    • In neuroscience: 418
  • Year to date:
    • Site-wide: 6,910
  • Since beginning of last month:
    • Site-wide: 6,250

Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

genomics more details view paper
  • Downloaded 2,534 times
  • Download rankings, all-time:
    • Site-wide: 4,921
    • In genomics: 571
  • Year to date:
    • Site-wide: 40,708
  • Since beginning of last month:
    • Site-wide: 34,181

Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

genomics more details view paper
  • Downloaded 2,398 times
  • Download rankings, all-time:
    • Site-wide: 5,358
    • In genomics: 632
  • Year to date:
    • Site-wide: 57,455
  • Since beginning of last month:
    • Site-wide: None

The human functional genome defined by genetic diversity

genomics more details view paper
  • Downloaded 2,039 times
  • Download rankings, all-time:
    • Site-wide: 6,766
    • In genomics: 769
  • Year to date:
    • Site-wide: 82,940
  • Since beginning of last month:
    • Site-wide: None

Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

genomics more details view paper
  • Downloaded 1,849 times
  • Download rankings, all-time:
    • Site-wide: 7,823
    • In genomics: 875
  • Year to date:
    • Site-wide: 64,697
  • Since beginning of last month:
    • Site-wide: 80,263

The changing mouse embryo transcriptome at whole tissue and single-cell resolution

developmental biology more details view paper
  • Downloaded 1,776 times
  • Download rankings, all-time:
    • Site-wide: 8,332
    • In developmental biology: 105
  • Year to date:
    • Site-wide: 11,186
  • Since beginning of last month:
    • Site-wide: 10,552

Comparing 3D genome organization in multiple species using Phylo-HMRF

bioinformatics more details view paper
  • Downloaded 1,702 times
  • Download rankings, all-time:
    • Site-wide: 8,910
    • In bioinformatics: 1,093
  • Year to date:
    • Site-wide: 74,495
  • Since beginning of last month:
    • Site-wide: 63,814

Pancreatic islet chromatin accessibility and conformation defines distal enhancer networks of type 2 diabetes risk

genomics more details view paper
  • Downloaded 1,572 times
  • Download rankings, all-time:
    • Site-wide: 10,024
    • In genomics: 1,108
  • Year to date:
    • Site-wide: 50,565
  • Since beginning of last month:
    • Site-wide: 65,046

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

molecular biology more details view paper
  • Downloaded 1,520 times
  • Download rankings, all-time:
    • Site-wide: 10,520
    • In molecular biology: 289
  • Year to date:
    • Site-wide: 11,473
  • Since beginning of last month:
    • Site-wide: None

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

genomics more details view paper
  • Downloaded 1,515 times
  • Download rankings, all-time:
    • Site-wide: 10,575
    • In genomics: 1,173
  • Year to date:
    • Site-wide: 11,410
  • Since beginning of last month:
    • Site-wide: None

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,477 times
  • Download rankings, all-time:
    • Site-wide: 10,952
    • In genomics: 1,217
  • Year to date:
    • Site-wide: 111,541
  • Since beginning of last month:
    • Site-wide: 99,249

A cell atlas of chromatin accessibility across 25 adult human tissues

genomics more details view paper
  • Downloaded 1,462 times
  • Download rankings, all-time:
    • Site-wide: 11,125
    • In genomics: 1,240
  • Year to date:
    • Site-wide: 347
  • Since beginning of last month:
    • Site-wide: 118

A Large-Scale Internal Validation Study of Unsupervised Virtual Trichrome Staining Technologies on Non-alcoholic Steatohepatitis Liver Biopsies

pathology more details view paper
  • Downloaded 1,421 times
  • Download rankings, all-time:
    • Site-wide: 11,606
    • In pathology: 53
  • Year to date:
    • Site-wide: 3,270
  • Since beginning of last month:
    • Site-wide: None

Single-cell chromatin accessibility analysis of mammary gland development reveals cell state transcriptional regulators and cellular lineage relationships

genomics more details view paper
  • Downloaded 1,394 times
  • Download rankings, all-time:
    • Site-wide: 11,960
    • In genomics: 1,322
  • Year to date:
    • Site-wide: 21,972
  • Since beginning of last month:
    • Site-wide: 16,442

Identification of essential regulatory elements in the human genome

genomics more details view paper
  • Downloaded 1,381 times
  • Download rankings, all-time:
    • Site-wide: 12,131
    • In genomics: 1,342
  • Year to date:
    • Site-wide: 73,040
  • Since beginning of last month:
    • Site-wide: 45,044

Cardiac Cell Type-Specific Gene Regulatory Programs and Disease Risk Association

genomics more details view paper
  • Downloaded 1,381 times
  • Download rankings, all-time:
    • Site-wide: 12,137
    • In genomics: 1,340
  • Year to date:
    • Site-wide: 5,313
  • Since beginning of last month:
    • Site-wide: 5,306

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,143 times
  • Download rankings, all-time:
    • Site-wide: 16,149
    • In bioinformatics: 1,982
  • Year to date:
    • Site-wide: 85,932
  • Since beginning of last month:
    • Site-wide: 83,875

Iterative Refinement of Cellular Identity from Single-Cell Data Using Online Learning

bioinformatics more details view paper
  • Downloaded 1,095 times
  • Download rankings, all-time:
    • Site-wide: 17,217
    • In bioinformatics: 2,095
  • Year to date:
    • Site-wide: 26,575
  • Since beginning of last month:
    • Site-wide: 16,744

LSD1/KDM1A Maintains Genome-wide Homeostasis of Transcriptional Enhancers

biochemistry more details view paper
  • Downloaded 1,032 times
  • Download rankings, all-time:
    • Site-wide: 18,852
    • In biochemistry: 391
  • Year to date:
    • Site-wide: 26,088
  • Since beginning of last month:
    • Site-wide: 32,386

Genome-wide association and multi-omic analyses reveal new mechanisms for Heart Failure

genetic and genomic medicine more details view paper
  • Downloaded 974 times
  • Download rankings, all-time:
    • Site-wide: 20,455
    • In genetic and genomic medicine: 63
  • Year to date:
    • Site-wide: 35,339
  • Since beginning of last month:
    • Site-wide: 30,297

DNA replication-mediated error correction of ectopic CENP-A deposition maintains centromere identity

cell biology more details view paper
  • Downloaded 806 times
  • Download rankings, all-time:
    • Site-wide: 26,763
    • In cell biology: 997
  • Year to date:
    • Site-wide: 112,403
  • Since beginning of last month:
    • Site-wide: None

An Array of 60,000 Antibodies for Proteome-Scale Antibody Generation and Target Discovery

systems biology more details view paper
  • Downloaded 752 times
  • Download rankings, all-time:
    • Site-wide: 29,468
    • In systems biology: 667
  • Year to date:
    • Site-wide: 79,320
  • Since beginning of last month:
    • Site-wide: 39,225

HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
  • Downloaded 730 times
  • Download rankings, all-time:
    • Site-wide: 30,727
    • In genetics: 1,521
  • Year to date:
    • Site-wide: 90,910
  • Since beginning of last month:
    • Site-wide: 88,560

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 515 times
  • Download rankings, all-time:
    • Site-wide: 47,969
    • In bioinformatics: 5,027
  • Year to date:
    • Site-wide: 50,441
  • Since beginning of last month:
    • Site-wide: 62,084

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

bioinformatics more details view paper
  • Downloaded 426 times
  • Download rankings, all-time:
    • Site-wide: 59,129
    • In bioinformatics: 5,902
  • Year to date:
    • Site-wide: 6,017
  • Since beginning of last month:
    • Site-wide: 18,571

Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development

genomics more details view paper
  • Downloaded 409 times
  • Download rankings, all-time:
    • Site-wide: 61,644
    • In genomics: 4,521
  • Year to date:
    • Site-wide: 31,560
  • Since beginning of last month:
    • Site-wide: 48,267

A dual mechanism of enhancer activation by FOXA pioneer factors induces endodermal organ fates

genomics more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 62,782
    • In genomics: 4,574
  • Year to date:
    • Site-wide: 23,072
  • Since beginning of last month:
    • Site-wide: 41,443

Discovery and Functional Characterization of Pro-growth Enhancers in Human Cancer Cells

cancer biology more details view paper
  • Downloaded 248 times
  • Download rankings, all-time:
    • Site-wide: 91,529
    • In cancer biology: 2,778
  • Year to date:
    • Site-wide: 3,445
  • Since beginning of last month:
    • Site-wide: 989

A β-catenin-driven switch in TCF/LEF transcription factor binding to DNA target sites promotes commitment of mammalian nephron progenitor cells

developmental biology more details view paper
  • Downloaded 228 times
  • Download rankings, all-time:
    • Site-wide: 95,838
    • In developmental biology: 2,601
  • Year to date:
    • Site-wide: 36,880
  • Since beginning of last month:
    • Site-wide: 27,994

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