Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,198 bioRxiv papers from 276,129 authors.

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Preprints

Opportunities And Obstacles For Deep Learning In Biology And Medicine

• Downloaded 50,811 times
• Download rankings, all-time:
  • Site-wide: 7 out of 62,198
  • In bioinformatics: 1 out of 6,209
• Year to date:
  • Site-wide: 91 out of 62,198
• Since beginning of last month:
  • Site-wide: 443 out of 62,198

Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome

• Downloaded 4,442 times
• Download rankings, all-time:
  • Site-wide: 498 out of 62,198
  • In bioinformatics: 102 out of 6,209
• Year to date:
  • Site-wide: 451 out of 62,198
• Since beginning of last month:
  • Site-wide: 45,708 out of 62,198

A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types

• Downloaded 2,184 times
• Download rankings, all-time:
  • Site-wide: 1,871 out of 62,198
  • In genomics: 416 out of 4,277
• Year to date:
  • Site-wide: 8,374 out of 62,198
• Since beginning of last month:
  • Site-wide: 6,263 out of 62,198

Semi-automated genome annotation using epigenomic data and Segway

• Downloaded 1,742 times
• Download rankings, all-time:
  • Site-wide: 2,781 out of 62,198
  • In bioinformatics: 562 out of 6,209
• Year to date:
  • Site-wide: 14,839 out of 62,198
• Since beginning of last month:
  • Site-wide: 11,949 out of 62,198

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

• Downloaded 1,676 times
• Download rankings, all-time:
  • Site-wide: 2,978 out of 62,198
  • In bioinformatics: 606 out of 6,209
• Year to date:
  • Site-wide: 14,078 out of 62,198
• Since beginning of last month:
  • Site-wide: 18,625 out of 62,198

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

• Downloaded 1,429 times
• Download rankings, all-time:
  • Site-wide: 3,873 out of 62,198
  • In genomics: 721 out of 4,277
• Year to date:
  • Site-wide: 723 out of 62,198
• Since beginning of last month:
  • Site-wide: 738 out of 62,198

DNAmod: the DNA modification database

• Downloaded 1,299 times
• Download rankings, all-time:
  • Site-wide: 4,529 out of 62,198
  • In bioinformatics: 894 out of 6,209
• Year to date:
  • Site-wide: 16,006 out of 62,198
• Since beginning of last month:
  • Site-wide: 22,379 out of 62,198

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression

• Downloaded 1,240 times
• Download rankings, all-time:
  • Site-wide: 4,878 out of 62,198
  • In genomics: 858 out of 4,277
• Year to date:
  • Site-wide: 53,696 out of 62,198
• Since beginning of last month:
  • Site-wide: 45,524 out of 62,198

Umap and Bismap: quantifying genome and methylome mappability

• Downloaded 1,070 times
• Download rankings, all-time:
  • Site-wide: 6,256 out of 62,198
  • In genomics: 1,043 out of 4,277
• Year to date:
  • Site-wide: 36,556 out of 62,198
• Since beginning of last month:
  • Site-wide: 38,128 out of 62,198

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

• Downloaded 899 times
• Download rankings, all-time:
  • Site-wide: 8,236 out of 62,198
  • In bioinformatics: 1,461 out of 6,209
• Year to date:
  • Site-wide: 1,666 out of 62,198
• Since beginning of last month:
  • Site-wide: None out of 62,198

Segway 2.0: Gaussian mixture models and minibatch training

• Downloaded 447 times
• Download rankings, all-time:
  • Site-wide: 21,543 out of 62,198
  • In bioinformatics: 3,112 out of 6,209
• Year to date:
  • Site-wide: 56,712 out of 62,198
• Since beginning of last month:
  • Site-wide: 44,531 out of 62,198

Motif elucidation in ChIP-seq datasets with a knockout control

• Downloaded 145 times
• Download rankings, all-time:
  • Site-wide: 50,500 out of 62,198
  • In bioinformatics: 5,511 out of 6,209
• Year to date:
  • Site-wide: 27,595 out of 62,198
• Since beginning of last month:
  • Site-wide: 3,010 out of 62,198