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Author: Michael M. Hoffman

Rankings

  • All-time downloads: 88,562 (rank: 2,461 )
  • Categories:
    • bioinformatics: 73,991 (rank: 17 )
    • cancer biology: 1,419 (rank: 7,703 (tie) )
    • genomics: 11,266 (rank: 2,028 )

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Preprints

Opportunities And Obstacles For Deep Learning In Biology And Medicine

bioinformatics more details view paper
  • Downloaded 56,991 times
  • Download rankings, all-time:
    • Site-wide: 159
    • In bioinformatics: 3
  • Year to date:
    • Site-wide: 2,770
  • Since beginning of last month:
    • Site-wide: 2,484

Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome

bioinformatics more details view paper
  • Downloaded 6,539 times
  • Download rankings, all-time:
    • Site-wide: 2,204
    • In bioinformatics: 129
  • Year to date:
    • Site-wide: 14,287
  • Since beginning of last month:
    • Site-wide: 6,863

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
  • Downloaded 2,904 times
  • Download rankings, all-time:
    • Site-wide: 6,815
    • In genomics: 625
  • Year to date:
    • Site-wide: 69,650
  • Since beginning of last month:
    • Site-wide: 56,882

A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types

genomics more details view paper
  • Downloaded 2,634 times
  • Download rankings, all-time:
    • Site-wide: 7,882
    • In genomics: 725
  • Year to date:
    • Site-wide: 96,066
  • Since beginning of last month:
    • Site-wide: 111,701

Semi-automated genome annotation using epigenomic data and Segway

bioinformatics more details view paper
  • Downloaded 2,353 times
  • Download rankings, all-time:
    • Site-wide: 9,289
    • In bioinformatics: 949
  • Year to date:
    • Site-wide: 55,375
  • Since beginning of last month:
    • Site-wide: 61,287

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

bioinformatics more details view paper
  • Downloaded 2,255 times
  • Download rankings, all-time:
    • Site-wide: 9,874
    • In bioinformatics: 986
  • Year to date:
    • Site-wide: 109,451
  • Since beginning of last month:
    • Site-wide: 147,644

DNAmod: the DNA modification database

bioinformatics more details view paper
  • Downloaded 1,718 times
  • Download rankings, all-time:
    • Site-wide: 14,830
    • In bioinformatics: 1,515
  • Year to date:
    • Site-wide: 100,515
  • Since beginning of last month:
    • Site-wide: 76,322

Human papillomavirus integration transforms chromatin to drive oncogenesis

cancer biology more details view paper
  • Downloaded 1,665 times
  • Download rankings, all-time:
    • Site-wide: 15,528
    • In cancer biology: 400
  • Year to date:
    • Site-wide: 9,755
  • Since beginning of last month:
    • Site-wide: 16,689

Umap and Bismap: quantifying genome and methylome mappability

genomics more details view paper
  • Downloaded 1,596 times
  • Download rankings, all-time:
    • Site-wide: 16,577
    • In genomics: 1,506
  • Year to date:
    • Site-wide: 69,828
  • Since beginning of last month:
    • Site-wide: 65,205

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression

genomics more details view paper
  • Downloaded 1,556 times
  • Download rankings, all-time:
    • Site-wide: 17,260
    • In genomics: 1,525
  • Year to date:
    • Site-wide: 95,377
  • Since beginning of last month:
    • Site-wide: 113,410

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

bioinformatics more details view paper
  • Downloaded 1,530 times
  • Download rankings, all-time:
    • Site-wide: 17,718
    • In bioinformatics: 1,848
  • Year to date:
    • Site-wide: 91,178
  • Since beginning of last month:
    • Site-wide: 56,856

Functional annotation of human long noncoding RNAs using chromatin conformation data

genomics more details view paper
  • Downloaded 1,523 times
  • Download rankings, all-time:
    • Site-wide: 17,833
    • In genomics: 1,678
  • Year to date:
    • Site-wide: 29,437
  • Since beginning of last month:
    • Site-wide: 15,763

Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls

genomics more details view paper
  • Downloaded 1,474 times
  • Download rankings, all-time:
    • Site-wide: 18,711
    • In genomics: 1,895
  • Year to date:
    • Site-wide: 11,493
  • Since beginning of last month:
    • Site-wide: 13,835

Motif elucidation in ChIP-seq datasets with a knockout control

bioinformatics more details view paper
  • Downloaded 1,083 times
  • Download rankings, all-time:
    • Site-wide: 30,153
    • In bioinformatics: 3,456
  • Year to date:
    • Site-wide: 17,625
  • Since beginning of last month:
    • Site-wide: 19,519

Assessing and assuring interoperability of a genomics file format

bioinformatics more details view paper
  • Downloaded 722 times
  • Download rankings, all-time:
    • Site-wide: 54,679
    • In bioinformatics: 6,093
  • Year to date:
    • Site-wide: 2,815
  • Since beginning of last month:
    • Site-wide: 22,268

Semi-supervised segmentation and genome annotation

bioinformatics more details view paper
  • Downloaded 647 times
  • Download rankings, all-time:
    • Site-wide: 63,643
    • In bioinformatics: 6,102
  • Year to date:
    • Site-wide: 61,195
  • Since beginning of last month:
    • Site-wide: 62,712

Segway 2.0: Gaussian mixture models and minibatch training

bioinformatics more details view paper
  • Downloaded 630 times
  • Download rankings, all-time:
    • Site-wide: 65,875
    • In bioinformatics: 5,952
  • Year to date:
    • Site-wide: 168,885
  • Since beginning of last month:
    • Site-wide: 169,039

Unsupervised analysis of multi-experiment transcriptomic patterns with SegRNA identifies unannotated transcripts

bioinformatics more details view paper
  • Downloaded 488 times
  • Download rankings, all-time:
    • Site-wide: 89,872
    • In bioinformatics: 8,131
  • Year to date:
    • Site-wide: 44,789
  • Since beginning of last month:
    • Site-wide: 42,548

Automated identification of cell-type-specific genes and alternative promoters

bioinformatics more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 151,837
    • In bioinformatics: 11,987
  • Year to date:
    • Site-wide: 40,535
  • Since beginning of last month:
    • Site-wide: 51,368

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