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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 72,919 bioRxiv papers from 317,430 authors.

Author: Michael M. Hoffman

Rankings

  • All-time downloads: 69,828 (rank: 213 out of 317,424)
  • Categories:
    • bioinformatics: 63,290 (rank: 6 out of 27,474)
    • genomics: 6,538 (rank: 2,031 out of 35,476)

Downloads per author, site-wide

Preprints

Semi-supervised segmentation and genome annotation

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No bioRxiv download data for this paper yet.

Viral integration transforms chromatin to drive oncogenesis

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No bioRxiv download data for this paper yet.

Opportunities And Obstacles For Deep Learning In Biology And Medicine

bioinformatics more details view paper
  • Downloaded 51,723 times
  • Download rankings, all-time:
    • Site-wide: 8 out of 72,911
    • In bioinformatics: 1 out of 7,121
  • Year to date:
    • Site-wide: 815 out of 72,911
  • Since beginning of last month:
    • Site-wide: 815 out of 72,911

Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome

bioinformatics more details view paper
  • Downloaded 4,834 times
  • Download rankings, all-time:
    • Site-wide: 521 out of 72,911
    • In bioinformatics: 103 out of 7,121
  • Year to date:
    • Site-wide: 4,584 out of 72,911
  • Since beginning of last month:
    • Site-wide: 4,584 out of 72,911

A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types

genomics more details view paper
  • Downloaded 2,259 times
  • Download rankings, all-time:
    • Site-wide: 2,168 out of 72,911
    • In genomics: 458 out of 4,840
  • Year to date:
    • Site-wide: 16,942 out of 72,911
  • Since beginning of last month:
    • Site-wide: 16,942 out of 72,911

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
  • Downloaded 1,857 times
  • Download rankings, all-time:
    • Site-wide: 3,035 out of 72,911
    • In genomics: 595 out of 4,840
  • Year to date:
    • Site-wide: 2,178 out of 72,911
  • Since beginning of last month:
    • Site-wide: 2,178 out of 72,911

Semi-automated genome annotation using epigenomic data and Segway

bioinformatics more details view paper
  • Downloaded 1,831 times
  • Download rankings, all-time:
    • Site-wide: 3,113 out of 72,911
    • In bioinformatics: 617 out of 7,121
  • Year to date:
    • Site-wide: 23,560 out of 72,911
  • Since beginning of last month:
    • Site-wide: 23,560 out of 72,911

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

bioinformatics more details view paper
  • Downloaded 1,755 times
  • Download rankings, all-time:
    • Site-wide: 3,339 out of 72,911
    • In bioinformatics: 657 out of 7,121
  • Year to date:
    • Site-wide: 17,666 out of 72,911
  • Since beginning of last month:
    • Site-wide: 17,666 out of 72,911

DNAmod: the DNA modification database

bioinformatics more details view paper
  • Downloaded 1,355 times
  • Download rankings, all-time:
    • Site-wide: 5,158 out of 72,911
    • In bioinformatics: 982 out of 7,121
  • Year to date:
    • Site-wide: 35,014 out of 72,911
  • Since beginning of last month:
    • Site-wide: 35,014 out of 72,911

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression

genomics more details view paper
  • Downloaded 1,283 times
  • Download rankings, all-time:
    • Site-wide: 5,668 out of 72,911
    • In genomics: 957 out of 4,840
  • Year to date:
    • Site-wide: 63,617 out of 72,911
  • Since beginning of last month:
    • Site-wide: 63,617 out of 72,911

Umap and Bismap: quantifying genome and methylome mappability

genomics more details view paper
  • Downloaded 1,139 times
  • Download rankings, all-time:
    • Site-wide: 6,928 out of 72,911
    • In genomics: 1,114 out of 4,840
  • Year to date:
    • Site-wide: 19,087 out of 72,911
  • Since beginning of last month:
    • Site-wide: 19,087 out of 72,911

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

bioinformatics more details view paper
  • Downloaded 1,000 times
  • Download rankings, all-time:
    • Site-wide: 8,563 out of 72,911
    • In bioinformatics: 1,488 out of 7,121
  • Year to date:
    • Site-wide: 17,556 out of 72,911
  • Since beginning of last month:
    • Site-wide: 17,556 out of 72,911

Segway 2.0: Gaussian mixture models and minibatch training

bioinformatics more details view paper
  • Downloaded 474 times
  • Download rankings, all-time:
    • Site-wide: 25,208 out of 72,911
    • In bioinformatics: 3,472 out of 7,121
  • Year to date:
    • Site-wide: 56,283 out of 72,911
  • Since beginning of last month:
    • Site-wide: 56,283 out of 72,911

Motif elucidation in ChIP-seq datasets with a knockout control

bioinformatics more details view paper
  • Downloaded 318 times
  • Download rankings, all-time:
    • Site-wide: 38,512 out of 72,911
    • In bioinformatics: 4,661 out of 7,121
  • Year to date:
    • Site-wide: 20,835 out of 72,911
  • Since beginning of last month:
    • Site-wide: 20,835 out of 72,911

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