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Author: José N. Onuchic

  • Most recently observed institution: Department of Physics and Astronomy, Rice University

Rankings

  • All-time downloads: 13,259 (rank: 11,075 (tie) out of 511,573)
  • Categories:
    • bioinformatics: 435 (rank: 23,995 (tie) out of 36,919)
    • biophysics: 2,476 (rank: 1,035 out of 18,805)
    • cancer biology: 2,175 (rank: 1,843 out of 31,534)
    • genetics: 3,044 (rank: 5,587 (tie) out of 38,716)
    • pharmacology and toxicology: 3,062 (rank: 176 (tie) out of 6,657)
    • systems biology: 2,067 (rank: 1,600 out of 12,906)

Downloads per author, site-wide

Preprints

Enhancing Intracellular Accumulation and Target Engagement of PROTACs with Reversible Covalent Chemistry

pharmacology and toxicology more details view paper
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    • Site-wide: 3,269 out of 118,598
    • In pharmacology and toxicology: 19 out of 1,033
  • Year to date:
    • Site-wide: 1,700 out of 118,598
  • Since beginning of last month:
    • Site-wide: 8,150 out of 118,598

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

genetics more details view paper
  • Downloaded 3,044 times
  • Download rankings, all-time:
    • Site-wide: 3,295 out of 118,598
    • In genetics: 157 out of 5,142
  • Year to date:
    • Site-wide: 50,604 out of 118,598
  • Since beginning of last month:
    • Site-wide: 77,750 out of 118,598

NRF2 activates a partial Epithelial-Mesenchymal Transition and is maximally present in a hybrid Epithelial/Mesenchymal phenotype

cancer biology more details view paper
  • Downloaded 1,083 times
  • Download rankings, all-time:
    • Site-wide: 15,208 out of 118,598
    • In cancer biology: 346 out of 3,753
  • Year to date:
    • Site-wide: 33,674 out of 118,598
  • Since beginning of last month:
    • Site-wide: 39,658 out of 118,598

A Transferable Model For Chromosome Architecture

biophysics more details view paper
  • Downloaded 776 times
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    • Site-wide: 24,707 out of 118,598
    • In biophysics: 738 out of 4,623
  • Year to date:
    • Site-wide: 97,947 out of 118,598
  • Since beginning of last month:
    • Site-wide: 102,649 out of 118,598

Testing the Gene Expression Classification of the EMT Spectrum

systems biology more details view paper
  • Downloaded 753 times
  • Download rankings, all-time:
    • Site-wide: 25,745 out of 118,598
    • In systems biology: 592 out of 2,643
  • Year to date:
    • Site-wide: 29,720 out of 118,598
  • Since beginning of last month:
    • Site-wide: 45,789 out of 118,598

Exploring Chromosomal Structural Heterogeneity Across Multiple Cell Lines

biophysics more details view paper
  • Downloaded 645 times
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    • Site-wide: 31,837 out of 118,598
    • In biophysics: 1,047 out of 4,623
  • Year to date:
    • Site-wide: 10,221 out of 118,598
  • Since beginning of last month:
    • Site-wide: 25,833 out of 118,598

PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer

biophysics more details view paper
  • Downloaded 479 times
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    • Site-wide: 45,860 out of 118,598
    • In biophysics: 1,595 out of 4,623
  • Year to date:
    • Site-wide: 85,670 out of 118,598
  • Since beginning of last month:
    • Site-wide: 75,143 out of 118,598

Towards Decoding the Metabolic Plasticity in Cancer: Coupling of Gene Regulation and Metabolic Pathways

systems biology more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 46,099 out of 118,598
    • In systems biology: 1,136 out of 2,643
  • Year to date:
    • Site-wide: 85,158 out of 118,598
  • Since beginning of last month:
    • Site-wide: 77,195 out of 118,598

The Nucleome Data Bank: Web-based Resources to Simulate and Analyze the Three-Dimensional Genome

bioinformatics more details view paper
  • Downloaded 435 times
  • Download rankings, all-time:
    • Site-wide: 51,045 out of 118,598
    • In bioinformatics: 5,339 out of 9,592
  • Year to date:
    • Site-wide: 27,827 out of 118,598
  • Since beginning of last month:
    • Site-wide: 81,221 out of 118,598

RACIPE: A computational tool for Modeling Gene Regulatory Circuits using Randomization

systems biology more details view paper
  • Downloaded 425 times
  • Download rankings, all-time:
    • Site-wide: 52,254 out of 118,598
    • In systems biology: 1,313 out of 2,643
  • Year to date:
    • Site-wide: 96,156 out of 118,598
  • Since beginning of last month:
    • Site-wide: 99,657 out of 118,598

A mechanism-based computational model to capture the interconnections among epithelial-mesenchymal transition, cancer stem cells and Notch-Jagged signaling

cancer biology more details view paper
  • Downloaded 415 times
  • Download rankings, all-time:
    • Site-wide: 53,493 out of 118,598
    • In cancer biology: 1,509 out of 3,753
  • Year to date:
    • Site-wide: 84,527 out of 118,598
  • Since beginning of last month:
    • Site-wide: 60,654 out of 118,598

Drug-tolerant idling melanoma cells exhibit theory-predicted metabolic low-low phenotype

systems biology more details view paper
  • Downloaded 412 times
  • Download rankings, all-time:
    • Site-wide: 53,997 out of 118,598
    • In systems biology: 1,359 out of 2,643
  • Year to date:
    • Site-wide: 32,542 out of 118,598
  • Since beginning of last month:
    • Site-wide: 44,709 out of 118,598

Rapid Assessment of T-Cell Receptor Specificity of the Immune Repertoire

biophysics more details view paper
  • Downloaded 364 times
  • Download rankings, all-time:
    • Site-wide: 60,859 out of 118,598
    • In biophysics: 2,262 out of 4,623
  • Year to date:
    • Site-wide: 21,005 out of 118,598
  • Since beginning of last month:
    • Site-wide: 42,990 out of 118,598

Numb prevents a complete EMT by modulating Notch signalling

cancer biology more details view paper
  • Downloaded 345 times
  • Download rankings, all-time:
    • Site-wide: 63,884 out of 118,598
    • In cancer biology: 1,827 out of 3,753
  • Year to date:
    • Site-wide: 102,361 out of 118,598
  • Since beginning of last month:
    • Site-wide: 89,907 out of 118,598

Distinguishing Mechanisms Underlying EMT Tristability

cancer biology more details view paper
  • Downloaded 332 times
  • Download rankings, all-time:
    • Site-wide: 65,988 out of 118,598
    • In cancer biology: 1,911 out of 3,753
  • Year to date:
    • Site-wide: 106,945 out of 118,598
  • Since beginning of last month:
    • Site-wide: 98,285 out of 118,598

Modeling Mayaro and Chikungunya Control Strategies in Rio de Janeiro Outbreaks

biophysics more details view paper
  • Downloaded 212 times
  • Download rankings, all-time:
    • Site-wide: 88,777 out of 118,598
    • In biophysics: 3,481 out of 4,623
  • Year to date:
    • Site-wide: 96,856 out of 118,598
  • Since beginning of last month:
    • Site-wide: 88,856 out of 118,598

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