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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,725 bioRxiv papers from 278,303 authors.

Author: Michael I Love

Rankings

  • All-time downloads: 55,833 (rank: 222 out of 278,303)
  • Categories:
    • bioinformatics: 53,280 (rank: 17 out of 24,398)
    • cancer biology: 142 (rank: 14,559 (tie) out of 17,214)
    • genomics: 2,411 (rank: 5,613 (tie) out of 31,927)

Downloads per author, site-wide

Preprints

Assessing exposure effects on gene expression

genomics more details view paper

No bioRxiv download data for this paper yet.

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 18,706 times
  • Download rankings, all-time:
    • Site-wide: 33 out of 62,725
    • In bioinformatics: 3 out of 6,249
  • Year to date:
    • Site-wide: 224 out of 62,725
  • Since beginning of last month:
    • Site-wide: 188 out of 62,725

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

bioinformatics more details view paper
  • Downloaded 17,900 times
  • Download rankings, all-time:
    • Site-wide: 37 out of 62,725
    • In bioinformatics: 4 out of 6,249
  • Year to date:
    • Site-wide: 1,340 out of 62,725
  • Since beginning of last month:
    • Site-wide: 2,473 out of 62,725

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 4,136 times
  • Download rankings, all-time:
    • Site-wide: 588 out of 62,725
    • In bioinformatics: 116 out of 6,249
  • Year to date:
    • Site-wide: 5,580 out of 62,725
  • Since beginning of last month:
    • Site-wide: 5,575 out of 62,725

SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data

bioinformatics more details view paper
  • Downloaded 2,279 times
  • Download rankings, all-time:
    • Site-wide: 1,762 out of 62,725
    • In bioinformatics: 362 out of 6,249
  • Year to date:
    • Site-wide: 4,143 out of 62,725
  • Since beginning of last month:
    • Site-wide: 18,232 out of 62,725

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,173 times
  • Download rankings, all-time:
    • Site-wide: 1,921 out of 62,725
    • In bioinformatics: 393 out of 6,249
  • Year to date:
    • Site-wide: 37,622 out of 62,725
  • Since beginning of last month:
    • Site-wide: 57,328 out of 62,725

zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications

bioinformatics more details view paper
  • Downloaded 1,693 times
  • Download rankings, all-time:
    • Site-wide: 2,969 out of 62,725
    • In bioinformatics: 600 out of 6,249
  • Year to date:
    • Site-wide: 13,192 out of 62,725
  • Since beginning of last month:
    • Site-wide: 26,398 out of 62,725

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 1,535 times
  • Download rankings, all-time:
    • Site-wide: 3,493 out of 62,725
    • In bioinformatics: 707 out of 6,249
  • Year to date:
    • Site-wide: 670 out of 62,725
  • Since beginning of last month:
    • Site-wide: 1,095 out of 62,725

Static And Dynamic DNA Loops Form AP-1 Bound Activation Hubs During Macrophage Development

genomics more details view paper
  • Downloaded 1,460 times
  • Download rankings, all-time:
    • Site-wide: 3,802 out of 62,725
    • In genomics: 702 out of 4,314
  • Year to date:
    • Site-wide: 30,135 out of 62,725
  • Since beginning of last month:
    • Site-wide: 51,707 out of 62,725

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

bioinformatics more details view paper
  • Downloaded 1,237 times
  • Download rankings, all-time:
    • Site-wide: 4,980 out of 62,725
    • In bioinformatics: 969 out of 6,249
  • Year to date:
    • Site-wide: 11,003 out of 62,725
  • Since beginning of last month:
    • Site-wide: 31,985 out of 62,725

Nonparametric expression analysis using inferential replicate counts

bioinformatics more details view paper
  • Downloaded 1,100 times
  • Download rankings, all-time:
    • Site-wide: 6,062 out of 62,725
    • In bioinformatics: 1,143 out of 6,249
  • Year to date:
    • Site-wide: 1,246 out of 62,725
  • Since beginning of last month:
    • Site-wide: 4,336 out of 62,725

Comparative analysis of neutrophil and monocyte epigenomes

genomics more details view paper
  • Downloaded 951 times
  • Download rankings, all-time:
    • Site-wide: 7,654 out of 62,725
    • In genomics: 1,208 out of 4,314
  • Year to date:
    • Site-wide: 8,934 out of 62,725
  • Since beginning of last month:
    • Site-wide: 9,581 out of 62,725

MOVIE: Multi-Omics VIsualization of Estimated contributions

bioinformatics more details view paper
  • Downloaded 859 times
  • Download rankings, all-time:
    • Site-wide: 9,005 out of 62,725
    • In bioinformatics: 1,580 out of 6,249
  • Year to date:
    • Site-wide: 13,723 out of 62,725
  • Since beginning of last month:
    • Site-wide: 24,621 out of 62,725

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

bioinformatics more details view paper
  • Downloaded 772 times
  • Download rankings, all-time:
    • Site-wide: 10,539 out of 62,725
    • In bioinformatics: 1,818 out of 6,249
  • Year to date:
    • Site-wide: 45,530 out of 62,725
  • Since beginning of last month:
    • Site-wide: 53,101 out of 62,725

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

bioinformatics more details view paper
  • Downloaded 427 times
  • Download rankings, all-time:
    • Site-wide: 23,052 out of 62,725
    • In bioinformatics: 3,272 out of 6,249
  • Year to date:
    • Site-wide: 32,821 out of 62,725
  • Since beginning of last month:
    • Site-wide: 47,806 out of 62,725

Tximeta: reference sequence checksums for provenance identification in RNA-seq

bioinformatics more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 37,563 out of 62,725
    • In bioinformatics: 4,554 out of 6,249
  • Year to date:
    • Site-wide: 14,382 out of 62,725
  • Since beginning of last month:
    • Site-wide: 675 out of 62,725

Silhouette width using generalized mean - a flexible method for assessing clustering efficiency

bioinformatics more details view paper
  • Downloaded 209 times
  • Download rankings, all-time:
    • Site-wide: 42,842 out of 62,725
    • In bioinformatics: 4,950 out of 6,249
  • Year to date:
    • Site-wide: 31,354 out of 62,725
  • Since beginning of last month:
    • Site-wide: 20,958 out of 62,725

A framework for transcriptome-wide association studies in breast cancer in diverse study populations

cancer biology more details view paper
  • Downloaded 142 times
  • Download rankings, all-time:
    • Site-wide: 51,723 out of 62,725
    • In cancer biology: 1,647 out of 2,061
  • Year to date:
    • Site-wide: 29,421 out of 62,725
  • Since beginning of last month:
    • Site-wide: 1,835 out of 62,725

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