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Author: Altuna Akalin

Rankings

  • All-time downloads: 41,743 (rank: 5,823 (tie) )
  • Categories:
    • biochemistry: 964 (rank: 8,122 (tie) )
    • bioinformatics: 12,194 (rank: 804 )
    • cancer biology: 1,465 (rank: 7,375 (tie) )
    • cardiovascular medicine: 371 (rank: 2,600 (tie) )
    • cell biology: 847 (rank: 15,370 (tie) )
    • developmental biology: 2,649 (rank: 1,404 )
    • epidemiology: 573 (rank: 20,079 (tie) )
    • genetics: 647 (rank: 25,966 (tie) )
    • genomics: 7,500 (rank: 3,420 )
    • immunology: 354 (rank: 33,222 (tie) )
    • microbiology: 449 (rank: 42,225 (tie) )
    • molecular biology: 3,120 (rank: 1,737 (tie) )
    • systems biology: 8,226 (rank: 398 (tie) )

Downloads per author, site-wide

Preprints

Multi-omics alleviates the limitations of panel-sequencing for cancer drug response prediction

bioinformatics more details view paper

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Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention

systems biology more details view paper
  • Downloaded 6,940 times
  • Download rankings, all-time:
    • Site-wide: 2,031
    • In systems biology: 21
  • Year to date:
    • Site-wide: 14,055
  • Since beginning of last month:
    • Site-wide: 10,907

Strategies for analyzing bisulfite sequencing data

bioinformatics more details view paper
  • Downloaded 3,675 times
  • Download rankings, all-time:
    • Site-wide: 4,849
    • In bioinformatics: 402
  • Year to date:
    • Site-wide: 93,431
  • Since beginning of last month:
    • Site-wide: 76,539

Cell-type specialization in the brain is encoded by specific long-range chromatin topologies

molecular biology more details view paper
  • Downloaded 3,214 times
  • Download rankings, all-time:
    • Site-wide: 5,887
    • In molecular biology: 124
  • Year to date:
    • Site-wide: 21,186
  • Since beginning of last month:
    • Site-wide: 27,514

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
  • Downloaded 2,904 times
  • Download rankings, all-time:
    • Site-wide: 6,815
    • In genomics: 625
  • Year to date:
    • Site-wide: 69,650
  • Since beginning of last month:
    • Site-wide: 56,882

Reproducible genomics analysis pipelines with GNU Guix

bioinformatics more details view paper
  • Downloaded 2,408 times
  • Download rankings, all-time:
    • Site-wide: 8,986
    • In bioinformatics: 885
  • Year to date:
    • Site-wide: 80,793
  • Since beginning of last month:
    • Site-wide: 115,746

Evaluation of colorectal cancer subtypes and cell lines using deep learning

bioinformatics more details view paper
  • Downloaded 2,360 times
  • Download rankings, all-time:
    • Site-wide: 9,255
    • In bioinformatics: 923
  • Year to date:
    • Site-wide: 86,647
  • Since beginning of last month:
    • Site-wide: 91,627

The SEQC2 Epigenomics Quality Control (EpiQC) Study: Comprehensive Characterization of Epigenetic Methods, Reproducibility, and Quantification

genomics more details view paper
  • Downloaded 1,748 times
  • Download rankings, all-time:
    • Site-wide: 14,475
    • In genomics: 1,385
  • Year to date:
    • Site-wide: 23,140
  • Since beginning of last month:
    • Site-wide: 27,221

Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells

developmental biology more details view paper
  • Downloaded 1,740 times
  • Download rankings, all-time:
    • Site-wide: 14,568
    • In developmental biology: 190
  • Year to date:
    • Site-wide: 77,953
  • Since beginning of last month:
    • Site-wide: 101,448

HOT or not: Examining the basis of high-occupancy target regions

genomics more details view paper
  • Downloaded 1,604 times
  • Download rankings, all-time:
    • Site-wide: 16,451
    • In genomics: 1,463
  • Year to date:
    • Site-wide: 146,287
  • Since beginning of last month:
    • Site-wide: 105,234

Single-cell RNA-sequencing of Herpes simplex virus 1-infected cells identifies NRF2 activation as an antiviral program

systems biology more details view paper
  • Downloaded 1,487 times
  • Download rankings, all-time:
    • Site-wide: 18,460
    • In systems biology: 307
  • Year to date:
    • Site-wide: 82,681
  • Since beginning of last month:
    • Site-wide: 116,636

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in wildtype and cloche/npas4l mutant zebrafish embryos

genomics more details view paper
  • Downloaded 1,471 times
  • Download rankings, all-time:
    • Site-wide: 18,784
    • In genomics: 1,689
  • Year to date:
    • Site-wide: 39,127
  • Since beginning of last month:
    • Site-wide: 62,410

Identifying tumor cells at the single cell level

cancer biology more details view paper
  • Downloaded 1,333 times
  • Download rankings, all-time:
    • Site-wide: 21,897
    • In cancer biology: 698
  • Year to date:
    • Site-wide: 4,140
  • Since beginning of last month:
    • Site-wide: 4,466

Janggu - Deep learning for genomics

bioinformatics more details view paper
  • Downloaded 1,292 times
  • Download rankings, all-time:
    • Site-wide: 23,012
    • In bioinformatics: 2,387
  • Year to date:
    • Site-wide: 116,182
  • Since beginning of last month:
    • Site-wide: 104,415

Multi-omics and deep learning provide a multifaceted view of cancer

bioinformatics more details view paper
  • Downloaded 1,173 times
  • Download rankings, all-time:
    • Site-wide: 26,704
    • In bioinformatics: 3,366
  • Year to date:
    • Site-wide: 13,445
  • Since beginning of last month:
    • Site-wide: 20,189

SARS-CoV-2 infection dynamics revealed by wastewater sequencing analysis and deconvolution

epidemiology more details view paper
  • Downloaded 1,048 times
  • Download rankings, all-time:
    • Site-wide: 31,620
    • In epidemiology: 3,096
  • Year to date:
    • Site-wide: 2,760
  • Since beginning of last month:
    • Site-wide: 1,399

Mutations In Disordered Regions Cause Disease By Creating Endocytosis Motifs

biochemistry more details view paper
  • Downloaded 987 times
  • Download rankings, all-time:
    • Site-wide: 34,619
    • In biochemistry: 790
  • Year to date:
    • Site-wide: 131,635
  • Since beginning of last month:
    • Site-wide: 85,277

FACT sets a barrier for cell fate reprogramming in C. elegans and Human

developmental biology more details view paper
  • Downloaded 974 times
  • Download rankings, all-time:
    • Site-wide: 35,299
    • In developmental biology: 639
  • Year to date:
    • Site-wide: 145,805
  • Since beginning of last month:
    • Site-wide: 103,610

netSmooth: Network-smoothing based imputation for single cell RNA-seq

bioinformatics more details view paper
  • Downloaded 835 times
  • Download rankings, all-time:
    • Site-wide: 44,347
    • In bioinformatics: 4,305
  • Year to date:
    • Site-wide: 183,077
  • Since beginning of last month:
    • Site-wide: 145,294

Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning

bioinformatics more details view paper
  • Downloaded 798 times
  • Download rankings, all-time:
    • Site-wide: 47,378
    • In bioinformatics: 4,707
  • Year to date:
    • Site-wide: 80,490
  • Since beginning of last month:
    • Site-wide: 137,609

Parallel genetics of regulatory sequences in vivo

genetics more details view paper
  • Downloaded 677 times
  • Download rankings, all-time:
    • Site-wide: 59,952
    • In genetics: 2,379
  • Year to date:
    • Site-wide: 93,892
  • Since beginning of last month:
    • Site-wide: 94,427

Herpesviral induction of germline transcription factor DUX4 is critical for viral gene expression

microbiology more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 87,805
    • In microbiology: 5,880
  • Year to date:
    • Site-wide: 55,522
  • Since beginning of last month:
    • Site-wide: 41,810

The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators

biochemistry more details view paper
  • Downloaded 481 times
  • Download rankings, all-time:
    • Site-wide: 91,244
    • In biochemistry: None
  • Year to date:
    • Site-wide: 5,234
  • Since beginning of last month:
    • Site-wide: 11,954

A novel IKK- and proteasome-independent mechanism of RelA activation triggers senescence associated secretome via transcriptional repression of NFKBIA

cell biology more details view paper
  • Downloaded 470 times
  • Download rankings, all-time:
    • Site-wide: 93,765
    • In cell biology: 4,023
  • Year to date:
    • Site-wide: 144,947
  • Since beginning of last month:
    • Site-wide: 108,142

Cardiovascular disease biomarkers derived from circulating cell-free DNA methylation

cardiovascular medicine more details view paper
  • Downloaded 432 times
  • Download rankings, all-time:
    • Site-wide: 102,350
    • In cardiovascular medicine: 248
  • Year to date:
    • Site-wide: 31,048
  • Since beginning of last month:
    • Site-wide: 46,986

The conserved histone chaperone LIN-53 links lifespan and healthspan regulation in C. elegans

cell biology more details view paper
  • Downloaded 413 times
  • Download rankings, all-time:
    • Site-wide: 106,855
    • In cell biology: 4,658
  • Year to date:
    • Site-wide: 147,563
  • Since beginning of last month:
    • Site-wide: 144,446

Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia

cancer biology more details view paper
  • Downloaded 406 times
  • Download rankings, all-time:
    • Site-wide: 108,644
    • In cancer biology: 3,006
  • Year to date:
    • Site-wide: 175,724
  • Since beginning of last month:
    • Site-wide: 170,624

Pdap1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification

immunology more details view paper
  • Downloaded 374 times
  • Download rankings, all-time:
    • Site-wide: 116,879
    • In immunology: 3,408
  • Year to date:
    • Site-wide: 144,323
  • Since beginning of last month:
    • Site-wide: 134,565

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