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Author: Altuna Akalin

Rankings

  • All-time downloads: 27,627 (rank: 4,730 )
  • Categories:
    • biochemistry: 883 (rank: 4,930 (tie) )
    • bioinformatics: 9,502 (rank: 723 )
    • cancer biology: 336 (rank: 20,589 (tie) )
    • cell biology: 662 (rank: 12,165 (tie) )
    • developmental biology: 2,374 (rank: 873 )
    • genetics: 465 (rank: 25,118 (tie) )
    • genomics: 5,255 (rank: 4,074 (tie) )
    • immunology: 236 (rank: 22,723 (tie) )
    • molecular biology: 1,268 (rank: 3,651 (tie) )
    • systems biology: 6,646 (rank: 382 (tie) )

Downloads per author, site-wide

Preprints

Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention

systems biology more details view paper
  • Downloaded 5,304 times
  • Download rankings, all-time:
    • Site-wide: 1,610
    • In systems biology: 21
  • Year to date:
    • Site-wide: 1,483
  • Since beginning of last month:
    • Site-wide: 3,067

Strategies for analyzing bisulfite sequencing data

bioinformatics more details view paper
  • Downloaded 3,392 times
  • Download rankings, all-time:
    • Site-wide: 3,040
    • In bioinformatics: 328
  • Year to date:
    • Site-wide: 22,827
  • Since beginning of last month:
    • Site-wide: 33,480

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
  • Downloaded 2,686 times
  • Download rankings, all-time:
    • Site-wide: 4,220
    • In genomics: 502
  • Year to date:
    • Site-wide: 32,565
  • Since beginning of last month:
    • Site-wide: 52,476

Reproducible genomics analysis pipelines with GNU Guix

bioinformatics more details view paper
  • Downloaded 2,193 times
  • Download rankings, all-time:
    • Site-wide: 5,730
    • In bioinformatics: 697
  • Year to date:
    • Site-wide: 34,389
  • Since beginning of last month:
    • Site-wide: 35,281

Evaluation of colorectal cancer subtypes and cell lines using deep learning

bioinformatics more details view paper
  • Downloaded 2,064 times
  • Download rankings, all-time:
    • Site-wide: 6,248
    • In bioinformatics: 767
  • Year to date:
    • Site-wide: 33,146
  • Since beginning of last month:
    • Site-wide: 34,998

HOT or not: Examining the basis of high-occupancy target regions

genomics more details view paper
  • Downloaded 1,529 times
  • Download rankings, all-time:
    • Site-wide: 9,818
    • In genomics: 1,110
  • Year to date:
    • Site-wide: 89,499
  • Since beginning of last month:
    • Site-wide: 104,252

Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells

developmental biology more details view paper
  • Downloaded 1,495 times
  • Download rankings, all-time:
    • Site-wide: 10,119
    • In developmental biology: 145
  • Year to date:
    • Site-wide: 11,702
  • Since beginning of last month:
    • Site-wide: 9,687

Single-cell RNA-sequencing of Herpes simplex virus 1-infected cells identifies NRF2 activation as an antiviral program

systems biology more details view paper
  • Downloaded 1,342 times
  • Download rankings, all-time:
    • Site-wide: 11,910
    • In systems biology: 238
  • Year to date:
    • Site-wide: 67,450
  • Since beginning of last month:
    • Site-wide: 77,558

Cell-type specialization in the brain is encoded by specific long-range chromatin topologies

molecular biology more details view paper
  • Downloaded 1,268 times
  • Download rankings, all-time:
    • Site-wide: 12,963
    • In molecular biology: 359
  • Year to date:
    • Site-wide: 17,066
  • Since beginning of last month:
    • Site-wide: 17,258

Janggu - Deep learning for genomics

bioinformatics more details view paper
  • Downloaded 1,090 times
  • Download rankings, all-time:
    • Site-wide: 16,309
    • In bioinformatics: 2,028
  • Year to date:
    • Site-wide: 30,882
  • Since beginning of last month:
    • Site-wide: 33,451

Mutations In Disordered Regions Cause Disease By Creating Endocytosis Motifs

biochemistry more details view paper
  • Downloaded 883 times
  • Download rankings, all-time:
    • Site-wide: 22,235
    • In biochemistry: 498
  • Year to date:
    • Site-wide: 45,180
  • Since beginning of last month:
    • Site-wide: 65,866

FACT sets a barrier for cell fate reprogramming in C. elegans and Human

developmental biology more details view paper
  • Downloaded 879 times
  • Download rankings, all-time:
    • Site-wide: 22,381
    • In developmental biology: 440
  • Year to date:
    • Site-wide: 89,230
  • Since beginning of last month:
    • Site-wide: 119,375

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in wildtype and cloche/npas4l mutant zebrafish embryos

genomics more details view paper
  • Downloaded 781 times
  • Download rankings, all-time:
    • Site-wide: 26,421
    • In genomics: 2,516
  • Year to date:
    • Site-wide: 9,748
  • Since beginning of last month:
    • Site-wide: 12,833

netSmooth: Network-smoothing based imputation for single cell RNA-seq

bioinformatics more details view paper
  • Downloaded 763 times
  • Download rankings, all-time:
    • Site-wide: 27,262
    • In bioinformatics: 3,236
  • Year to date:
    • Site-wide: 65,329
  • Since beginning of last month:
    • Site-wide: 99,597

Parallel genetics of regulatory sequences in vivo

genetics more details view paper
  • Downloaded 465 times
  • Download rankings, all-time:
    • Site-wide: 51,168
    • In genetics: 2,474
  • Year to date:
    • Site-wide: 32,458
  • Since beginning of last month:
    • Site-wide: 16,084

A novel IKK- and proteasome-independent mechanism of RelA activation triggers senescence associated secretome via transcriptional repression of NFKBIA

cell biology more details view paper
  • Downloaded 340 times
  • Download rankings, all-time:
    • Site-wide: 69,398
    • In cell biology: 3,167
  • Year to date:
    • Site-wide: 40,040
  • Since beginning of last month:
    • Site-wide: 46,706

Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia

cancer biology more details view paper
  • Downloaded 336 times
  • Download rankings, all-time:
    • Site-wide: 70,133
    • In cancer biology: 2,052
  • Year to date:
    • Site-wide: 74,355
  • Since beginning of last month:
    • Site-wide: 86,871

The conserved histone chaperone LIN-53 links lifespan and healthspan regulation in C. elegans

cell biology more details view paper
  • Downloaded 322 times
  • Download rankings, all-time:
    • Site-wide: 72,642
    • In cell biology: 3,340
  • Year to date:
    • Site-wide: 65,532
  • Since beginning of last month:
    • Site-wide: 112,614

The SEQC2 Epigenomics Quality Control (EpiQC) Study: Comprehensive Characterization of Epigenetic Methods, Reproducibility, and Quantification

genomics more details view paper
  • Downloaded 259 times
  • Download rankings, all-time:
    • Site-wide: 84,967
    • In genomics: 5,419
  • Year to date:
    • Site-wide: 3,058
  • Since beginning of last month:
    • Site-wide: 2,224

Pdap1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification

immunology more details view paper
  • Downloaded 236 times
  • Download rankings, all-time:
    • Site-wide: 89,777
    • In immunology: 2,425
  • Year to date:
    • Site-wide: 74,510
  • Since beginning of last month:
    • Site-wide: 108,764

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