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Author: Altuna Akalin

  • ORCiD: http://orcid.org/0000-0002-0468-0117
  • Most recently observed institution: Bioinformatics and Omics Data Science Platform, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association

Rankings

  • All-time downloads: 25,653 (rank: 2,224 out of 428,328)
  • Categories:
    • biochemistry: 852 (rank: 4,347 (tie) out of 20,819)
    • bioinformatics: 9,247 (rank: 688 out of 36,286)
    • cancer biology: 320 (rank: 18,886 (tie) out of 30,517)
    • cell biology: 603 (rank: 11,932 (tie) out of 33,012)
    • developmental biology: 2,157 (rank: 860 out of 17,013)
    • genetics: 368 (rank: 26,900 (tie) out of 38,055)
    • genomics: 4,772 (rank: 4,227 (tie) out of 44,710)
    • immunology: 218 (rank: 20,555 (tie) out of 26,612)
    • molecular biology: 1,056 (rank: 4,062 (tie) out of 23,555)
    • systems biology: 6,060 (rank: 476 (tie) out of 12,504)

Downloads per author, site-wide

Preprints

Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention

systems biology more details view paper
  • Downloaded 4,756 times
  • Download rankings, all-time:
    • Site-wide: 962 out of 101,401
    • In systems biology: 24 out of 2,573
  • Year to date:
    • Site-wide: 300 out of 101,401
  • Since beginning of last month:
    • Site-wide: 486 out of 101,401

Strategies for analyzing bisulfite sequencing data

bioinformatics more details view paper
  • Downloaded 3,318 times
  • Download rankings, all-time:
    • Site-wide: 1,808 out of 101,401
    • In bioinformatics: 308 out of 9,295
  • Year to date:
    • Site-wide: 23,539 out of 101,401
  • Since beginning of last month:
    • Site-wide: 36,002 out of 101,401

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
  • Downloaded 2,636 times
  • Download rankings, all-time:
    • Site-wide: 2,657 out of 101,401
    • In genomics: 482 out of 6,281
  • Year to date:
    • Site-wide: 2,979 out of 101,401
  • Since beginning of last month:
    • Site-wide: 16,482 out of 101,401

Reproducible genomics analysis pipelines with GNU Guix

bioinformatics more details view paper
  • Downloaded 2,150 times
  • Download rankings, all-time:
    • Site-wide: 3,747 out of 101,401
    • In bioinformatics: 671 out of 9,295
  • Year to date:
    • Site-wide: 28,267 out of 101,401
  • Since beginning of last month:
    • Site-wide: 35,114 out of 101,401

Evaluation of colorectal cancer subtypes and cell lines using deep learning

bioinformatics more details view paper
  • Downloaded 2,003 times
  • Download rankings, all-time:
    • Site-wide: 4,199 out of 101,401
    • In bioinformatics: 742 out of 9,295
  • Year to date:
    • Site-wide: 18,502 out of 101,401
  • Since beginning of last month:
    • Site-wide: 27,429 out of 101,401

HOT or not: Examining the basis of high-occupancy target regions

genomics more details view paper
  • Downloaded 1,507 times
  • Download rankings, all-time:
    • Site-wide: 6,815 out of 101,401
    • In genomics: 1,048 out of 6,281
  • Year to date:
    • Site-wide: 67,606 out of 101,401
  • Since beginning of last month:
    • Site-wide: 68,769 out of 101,401

Single-cell RNA-sequencing of Herpes simplex virus 1-infected cells identifies NRF2 activation as an antiviral program

systems biology more details view paper
  • Downloaded 1,304 times
  • Download rankings, all-time:
    • Site-wide: 8,706 out of 101,401
    • In systems biology: 230 out of 2,573
  • Year to date:
    • Site-wide: 16,998 out of 101,401
  • Since beginning of last month:
    • Site-wide: 47,268 out of 101,401

Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells

developmental biology more details view paper
  • Downloaded 1,299 times
  • Download rankings, all-time:
    • Site-wide: 8,772 out of 101,401
    • In developmental biology: 173 out of 3,022
  • Year to date:
    • Site-wide: 1,785 out of 101,401
  • Since beginning of last month:
    • Site-wide: 4,026 out of 101,401

Cell-type specialization in the brain is encoded by specific long-range chromatin topologies

molecular biology more details view paper
  • Downloaded 1,056 times
  • Download rankings, all-time:
    • Site-wide: 12,303 out of 101,401
    • In molecular biology: 418 out of 3,517
  • Year to date:
    • Site-wide: 2,423 out of 101,401
  • Since beginning of last month:
    • Site-wide: 2,424 out of 101,401

Janggu - Deep learning for genomics

bioinformatics more details view paper
  • Downloaded 1,037 times
  • Download rankings, all-time:
    • Site-wide: 12,666 out of 101,401
    • In bioinformatics: 1,976 out of 9,295
  • Year to date:
    • Site-wide: 14,531 out of 101,401
  • Since beginning of last month:
    • Site-wide: 43,891 out of 101,401

FACT sets a barrier for cell fate reprogramming in C. elegans and Human

developmental biology more details view paper
  • Downloaded 858 times
  • Download rankings, all-time:
    • Site-wide: 17,145 out of 101,401
    • In developmental biology: 407 out of 3,022
  • Year to date:
    • Site-wide: 75,884 out of 101,401
  • Since beginning of last month:
    • Site-wide: 63,099 out of 101,401

Mutations In Disordered Regions Cause Disease By Creating Endocytosis Motifs

biochemistry more details view paper
  • Downloaded 852 times
  • Download rankings, all-time:
    • Site-wide: 17,327 out of 101,401
    • In biochemistry: 454 out of 3,457
  • Year to date:
    • Site-wide: 66,824 out of 101,401
  • Since beginning of last month:
    • Site-wide: 69,582 out of 101,401

netSmooth: Network-smoothing based imputation for single cell RNA-seq

bioinformatics more details view paper
  • Downloaded 739 times
  • Download rankings, all-time:
    • Site-wide: 21,472 out of 101,401
    • In bioinformatics: 3,078 out of 9,295
  • Year to date:
    • Site-wide: 70,061 out of 101,401
  • Since beginning of last month:
    • Site-wide: 74,430 out of 101,401

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in wildtype and cloche/npas4l mutant zebrafish embryos

genomics more details view paper
  • Downloaded 629 times
  • Download rankings, all-time:
    • Site-wide: 27,118 out of 101,401
    • In genomics: 2,872 out of 6,281
  • Year to date:
    • Site-wide: 5,337 out of 101,401
  • Since beginning of last month:
    • Site-wide: 12,693 out of 101,401

Parallel genetics of regulatory sequences in vivo

genetics more details view paper
  • Downloaded 368 times
  • Download rankings, all-time:
    • Site-wide: 51,277 out of 101,401
    • In genetics: 2,852 out of 5,038
  • Year to date:
    • Site-wide: 12,330 out of 101,401
  • Since beginning of last month:
    • Site-wide: 11,102 out of 101,401

Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia

cancer biology more details view paper
  • Downloaded 320 times
  • Download rankings, all-time:
    • Site-wide: 58,163 out of 101,401
    • In cancer biology: 1,884 out of 3,636
  • Year to date:
    • Site-wide: 75,080 out of 101,401
  • Since beginning of last month:
    • Site-wide: 56,581 out of 101,401

The conserved histone chaperone LIN-53 links lifespan and healthspan regulation in C. elegans

cell biology more details view paper
  • Downloaded 308 times
  • Download rankings, all-time:
    • Site-wide: 60,003 out of 101,401
    • In cell biology: 3,094 out of 5,252
  • Year to date:
    • Site-wide: 78,602 out of 101,401
  • Since beginning of last month:
    • Site-wide: 81,109 out of 101,401

A novel IKK- and proteasome-independent mechanism of RelA activation triggers senescence associated secretome via transcriptional repression of NFKBIA

cell biology more details view paper
  • Downloaded 295 times
  • Download rankings, all-time:
    • Site-wide: 62,091 out of 101,401
    • In cell biology: 3,218 out of 5,252
  • Year to date:
    • Site-wide: 27,210 out of 101,401
  • Since beginning of last month:
    • Site-wide: 30,156 out of 101,401

Pdap1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification

immunology more details view paper
  • Downloaded 218 times
  • Download rankings, all-time:
    • Site-wide: 75,714 out of 101,401
    • In immunology: 2,211 out of 3,159
  • Year to date:
    • Site-wide: 26,236 out of 101,401
  • Since beginning of last month:
    • Site-wide: 62,199 out of 101,401
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