Author: Altuna Akalin

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Preprints

Cell-type specialization in the brain is encoded by specific long-range chromatin topologies

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Strategies for analyzing bisulfite sequencing data

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Reproducible genomics analysis pipelines with GNU Guix

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Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

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Evaluation of colorectal cancer subtypes and cell lines using deep learning

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HOT or not: Examining the basis of high-occupancy target regions

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Single-cell RNA-sequencing of Herpes simplex virus 1-infected cells identifies NRF2 activation as an antiviral program

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Janggu: Deep Learning for Genomics

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FACT sets a barrier for cell fate reprogramming in C. elegans and Human

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Mutations In Disordered Regions Cause Disease By Creating Endocytosis Motifs

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netSmooth: Network-smoothing based imputation for single cell RNA-seq

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PHF3 regulates neuronal gene expression through the new Pol II CTD reader domain SPOC

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Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia

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The conserved histone chaperone LIN-53 links lifespan and healthspan regulation in C. elegans

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A novel IKK- and proteasome-independent mechanism of RelA activation triggers senescence associated secretome via transcriptional repression of NFKBIA

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Pdap1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification

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