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Author: Altuna Akalin

Rankings

  • All-time downloads: 15,732 (rank: 2,934 out of 337,990)
  • Categories:
    • biochemistry: 1,080 (rank: 1,589 (tie) out of 14,388)
    • bioinformatics: 8,480 (rank: 534 out of 28,977)
    • cancer biology: 259 (rank: 15,258 (tie) out of 22,599)
    • cell biology: 421 (rank: 11,450 (tie) out of 24,227)
    • developmental biology: 809 (rank: 2,644 (tie) out of 13,103)
    • genomics: 3,431 (rank: 4,907 (tie) out of 37,090)
    • immunology: 70 (rank: 16,507 (tie) out of 16,797)
    • systems biology: 1,182 (rank: 2,143 (tie) out of 10,194)

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Preprints

Cell-type specialization in the brain is encoded by specific long-range chromatin topologies

molecular biology more details view paper

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Strategies for analyzing bisulfite sequencing data

bioinformatics more details view paper
  • Downloaded 3,157 times
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    • Site-wide: 1,332 out of 77,993
    • In bioinformatics: 259 out of 7,530
  • Year to date:
    • Site-wide: 20,313 out of 77,993
  • Since beginning of last month:
    • Site-wide: 21,181 out of 77,993

Reproducible genomics analysis pipelines with GNU Guix

bioinformatics more details view paper
  • Downloaded 2,020 times
  • Download rankings, all-time:
    • Site-wide: 2,933 out of 77,993
    • In bioinformatics: 563 out of 7,530
  • Year to date:
    • Site-wide: 19,855 out of 77,993
  • Since beginning of last month:
    • Site-wide: 16,813 out of 77,993

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
  • Downloaded 1,986 times
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    • In genomics: 587 out of 5,105
  • Year to date:
    • Site-wide: 3,048 out of 77,993
  • Since beginning of last month:
    • Site-wide: 3,435 out of 77,993

Evaluation of colorectal cancer subtypes and cell lines using deep learning

bioinformatics more details view paper
  • Downloaded 1,813 times
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    • Site-wide: 3,499 out of 77,993
    • In bioinformatics: 676 out of 7,530
  • Year to date:
    • Site-wide: 16,448 out of 77,993
  • Since beginning of last month:
    • Site-wide: 18,991 out of 77,993

HOT or not: Examining the basis of high-occupancy target regions

genomics more details view paper
  • Downloaded 1,445 times
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    • Site-wide: 5,138 out of 77,993
    • In genomics: 881 out of 5,105
  • Year to date:
    • Site-wide: 50,411 out of 77,993
  • Since beginning of last month:
    • Site-wide: 56,926 out of 77,993

Single-cell RNA-sequencing of Herpes simplex virus 1-infected cells identifies NRF2 activation as an antiviral program

systems biology more details view paper
  • Downloaded 1,182 times
  • Download rankings, all-time:
    • Site-wide: 7,173 out of 77,993
    • In systems biology: 208 out of 2,102
  • Year to date:
    • Site-wide: 6,308 out of 77,993
  • Since beginning of last month:
    • Site-wide: 6,921 out of 77,993

Janggu: Deep Learning for Genomics

bioinformatics more details view paper
  • Downloaded 819 times
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    • Site-wide: 12,944 out of 77,993
    • In bioinformatics: 2,104 out of 7,530
  • Year to date:
    • Site-wide: 12,230 out of 77,993
  • Since beginning of last month:
    • Site-wide: 11,168 out of 77,993

FACT sets a barrier for cell fate reprogramming in C. elegans and Human

developmental biology more details view paper
  • Downloaded 809 times
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    • Site-wide: 13,193 out of 77,993
    • In developmental biology: 304 out of 2,349
  • Year to date:
    • Site-wide: 50,068 out of 77,993
  • Since beginning of last month:
    • Site-wide: 47,420 out of 77,993

Mutations In Disordered Regions Cause Disease By Creating Endocytosis Motifs

biochemistry more details view paper
  • Downloaded 788 times
  • Download rankings, all-time:
    • Site-wide: 13,751 out of 77,993
    • In biochemistry: 297 out of 2,452
  • Year to date:
    • Site-wide: 51,822 out of 77,993
  • Since beginning of last month:
    • Site-wide: 50,409 out of 77,993

netSmooth: Network-smoothing based imputation for single cell RNA-seq

bioinformatics more details view paper
  • Downloaded 671 times
  • Download rankings, all-time:
    • Site-wide: 17,442 out of 77,993
    • In bioinformatics: 2,633 out of 7,530
  • Year to date:
    • Site-wide: 66,800 out of 77,993
  • Since beginning of last month:
    • Site-wide: 72,132 out of 77,993

PHF3 regulates neuronal gene expression through the new Pol II CTD reader domain SPOC

biochemistry more details view paper
  • Downloaded 292 times
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    • Site-wide: 45,624 out of 77,993
    • In biochemistry: 1,309 out of 2,452
  • Year to date:
    • Site-wide: 2,712 out of 77,993
  • Since beginning of last month:
    • Site-wide: 6,491 out of 77,993

Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia

cancer biology more details view paper
  • Downloaded 259 times
  • Download rankings, all-time:
    • Site-wide: 50,079 out of 77,993
    • In cancer biology: 1,593 out of 2,705
  • Year to date:
    • Site-wide: 68,620 out of 77,993
  • Since beginning of last month:
    • Site-wide: 70,264 out of 77,993

The conserved histone chaperone LIN-53 links lifespan and healthspan regulation in C. elegans

cell biology more details view paper
  • Downloaded 259 times
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    • Site-wide: 50,114 out of 77,993
    • In cell biology: 2,520 out of 3,885
  • Year to date:
    • Site-wide: 56,392 out of 77,993
  • Since beginning of last month:
    • Site-wide: 51,350 out of 77,993

A novel IKK- and proteasome-independent mechanism of RelA activation triggers senescence associated secretome via transcriptional repression of NFKBIA

cell biology more details view paper
  • Downloaded 162 times
  • Download rankings, all-time:
    • Site-wide: 65,157 out of 77,993
    • In cell biology: 3,247 out of 3,885
  • Year to date:
    • Site-wide: 19,141 out of 77,993
  • Since beginning of last month:
    • Site-wide: 38,983 out of 77,993

Pdap1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification

immunology more details view paper
  • Downloaded 70 times
  • Download rankings, all-time:
    • Site-wide: 75,341 out of 77,993
    • In immunology: 2,005 out of 2,101
  • Year to date:
    • Site-wide: 21,894 out of 77,993
  • Since beginning of last month:
    • Site-wide: 40,071 out of 77,993

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