Author: Altuna Akalin
- ORCiD: http://orcid.org/0000-0002-0468-0117
- Most recently observed institution: Max-Delbruck-Center for Molecular Medicine
Rankings
- All-time downloads: 41,743 (rank: 5,823 (tie) )
- Categories:
- biochemistry: 964 (rank: 8,122 (tie) )
- bioinformatics: 12,194 (rank: 804 )
- cancer biology: 1,465 (rank: 7,375 (tie) )
- cardiovascular medicine: 371 (rank: 2,600 (tie) )
- cell biology: 847 (rank: 15,370 (tie) )
- developmental biology: 2,649 (rank: 1,404 )
- epidemiology: 573 (rank: 20,079 (tie) )
- genetics: 647 (rank: 25,966 (tie) )
- genomics: 7,500 (rank: 3,420 )
- immunology: 354 (rank: 33,222 (tie) )
- microbiology: 449 (rank: 42,225 (tie) )
- molecular biology: 3,120 (rank: 1,737 (tie) )
- systems biology: 8,226 (rank: 398 (tie) )
Downloads per author, site-wide
Preprints
Multi-omics alleviates the limitations of panel-sequencing for cancer drug response prediction
bioinformatics more details view paperNo download data for this paper yet.
Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention
systems biology more details view paper- Downloaded 6,940 times
- Download rankings, all-time:
- Site-wide: 2,031
- In systems biology: 21
- Year to date:
- Site-wide: 14,055
- Since beginning of last month:
- Site-wide: 10,907
Strategies for analyzing bisulfite sequencing data
bioinformatics more details view paper- Downloaded 3,675 times
- Download rankings, all-time:
- Site-wide: 4,849
- In bioinformatics: 402
- Year to date:
- Site-wide: 93,431
- Since beginning of last month:
- Site-wide: 76,539
Cell-type specialization in the brain is encoded by specific long-range chromatin topologies
molecular biology more details view paper- Downloaded 3,214 times
- Download rankings, all-time:
- Site-wide: 5,887
- In molecular biology: 124
- Year to date:
- Site-wide: 21,186
- Since beginning of last month:
- Site-wide: 27,514
Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping
genomics more details view paper- Downloaded 2,904 times
- Download rankings, all-time:
- Site-wide: 6,815
- In genomics: 625
- Year to date:
- Site-wide: 69,650
- Since beginning of last month:
- Site-wide: 56,882
Reproducible genomics analysis pipelines with GNU Guix
bioinformatics more details view paper- Downloaded 2,408 times
- Download rankings, all-time:
- Site-wide: 8,986
- In bioinformatics: 885
- Year to date:
- Site-wide: 80,793
- Since beginning of last month:
- Site-wide: 115,746
Evaluation of colorectal cancer subtypes and cell lines using deep learning
bioinformatics more details view paper- Downloaded 2,360 times
- Download rankings, all-time:
- Site-wide: 9,255
- In bioinformatics: 923
- Year to date:
- Site-wide: 86,647
- Since beginning of last month:
- Site-wide: 91,627
The SEQC2 Epigenomics Quality Control (EpiQC) Study: Comprehensive Characterization of Epigenetic Methods, Reproducibility, and Quantification
genomics more details view paper- Downloaded 1,748 times
- Download rankings, all-time:
- Site-wide: 14,475
- In genomics: 1,385
- Year to date:
- Site-wide: 23,140
- Since beginning of last month:
- Site-wide: 27,221
Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells
developmental biology more details view paper- Downloaded 1,740 times
- Download rankings, all-time:
- Site-wide: 14,568
- In developmental biology: 190
- Year to date:
- Site-wide: 77,953
- Since beginning of last month:
- Site-wide: 101,448
HOT or not: Examining the basis of high-occupancy target regions
genomics more details view paper- Downloaded 1,604 times
- Download rankings, all-time:
- Site-wide: 16,451
- In genomics: 1,463
- Year to date:
- Site-wide: 146,287
- Since beginning of last month:
- Site-wide: 105,234
Single-cell RNA-sequencing of Herpes simplex virus 1-infected cells identifies NRF2 activation as an antiviral program
systems biology more details view paper- Downloaded 1,487 times
- Download rankings, all-time:
- Site-wide: 18,460
- In systems biology: 307
- Year to date:
- Site-wide: 82,681
- Since beginning of last month:
- Site-wide: 116,636
Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in wildtype and cloche/npas4l mutant zebrafish embryos
genomics more details view paper- Downloaded 1,471 times
- Download rankings, all-time:
- Site-wide: 18,784
- In genomics: 1,689
- Year to date:
- Site-wide: 39,127
- Since beginning of last month:
- Site-wide: 62,410
Identifying tumor cells at the single cell level
cancer biology more details view paper- Downloaded 1,333 times
- Download rankings, all-time:
- Site-wide: 21,897
- In cancer biology: 698
- Year to date:
- Site-wide: 4,140
- Since beginning of last month:
- Site-wide: 4,466
Janggu - Deep learning for genomics
bioinformatics more details view paper- Downloaded 1,292 times
- Download rankings, all-time:
- Site-wide: 23,012
- In bioinformatics: 2,387
- Year to date:
- Site-wide: 116,182
- Since beginning of last month:
- Site-wide: 104,415
Multi-omics and deep learning provide a multifaceted view of cancer
bioinformatics more details view paper- Downloaded 1,173 times
- Download rankings, all-time:
- Site-wide: 26,704
- In bioinformatics: 3,366
- Year to date:
- Site-wide: 13,445
- Since beginning of last month:
- Site-wide: 20,189
SARS-CoV-2 infection dynamics revealed by wastewater sequencing analysis and deconvolution
epidemiology more details view paper- Downloaded 1,048 times
- Download rankings, all-time:
- Site-wide: 31,620
- In epidemiology: 3,096
- Year to date:
- Site-wide: 2,760
- Since beginning of last month:
- Site-wide: 1,399
Mutations In Disordered Regions Cause Disease By Creating Endocytosis Motifs
biochemistry more details view paper- Downloaded 987 times
- Download rankings, all-time:
- Site-wide: 34,619
- In biochemistry: 790
- Year to date:
- Site-wide: 131,635
- Since beginning of last month:
- Site-wide: 85,277
FACT sets a barrier for cell fate reprogramming in C. elegans and Human
developmental biology more details view paper- Downloaded 974 times
- Download rankings, all-time:
- Site-wide: 35,299
- In developmental biology: 639
- Year to date:
- Site-wide: 145,805
- Since beginning of last month:
- Site-wide: 103,610
netSmooth: Network-smoothing based imputation for single cell RNA-seq
bioinformatics more details view paper- Downloaded 835 times
- Download rankings, all-time:
- Site-wide: 44,347
- In bioinformatics: 4,305
- Year to date:
- Site-wide: 183,077
- Since beginning of last month:
- Site-wide: 145,294
Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning
bioinformatics more details view paper- Downloaded 798 times
- Download rankings, all-time:
- Site-wide: 47,378
- In bioinformatics: 4,707
- Year to date:
- Site-wide: 80,490
- Since beginning of last month:
- Site-wide: 137,609
Parallel genetics of regulatory sequences in vivo
genetics more details view paper- Downloaded 677 times
- Download rankings, all-time:
- Site-wide: 59,952
- In genetics: 2,379
- Year to date:
- Site-wide: 93,892
- Since beginning of last month:
- Site-wide: 94,427
Herpesviral induction of germline transcription factor DUX4 is critical for viral gene expression
microbiology more details view paper- Downloaded 499 times
- Download rankings, all-time:
- Site-wide: 87,805
- In microbiology: 5,880
- Year to date:
- Site-wide: 55,522
- Since beginning of last month:
- Site-wide: 41,810
The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators
biochemistry more details view paper- Downloaded 481 times
- Download rankings, all-time:
- Site-wide: 91,244
- In biochemistry: None
- Year to date:
- Site-wide: 5,234
- Since beginning of last month:
- Site-wide: 11,954
A novel IKK- and proteasome-independent mechanism of RelA activation triggers senescence associated secretome via transcriptional repression of NFKBIA
cell biology more details view paper- Downloaded 470 times
- Download rankings, all-time:
- Site-wide: 93,765
- In cell biology: 4,023
- Year to date:
- Site-wide: 144,947
- Since beginning of last month:
- Site-wide: 108,142
Cardiovascular disease biomarkers derived from circulating cell-free DNA methylation
cardiovascular medicine more details view paper- Downloaded 432 times
- Download rankings, all-time:
- Site-wide: 102,350
- In cardiovascular medicine: 248
- Year to date:
- Site-wide: 31,048
- Since beginning of last month:
- Site-wide: 46,986
The conserved histone chaperone LIN-53 links lifespan and healthspan regulation in C. elegans
cell biology more details view paper- Downloaded 413 times
- Download rankings, all-time:
- Site-wide: 106,855
- In cell biology: 4,658
- Year to date:
- Site-wide: 147,563
- Since beginning of last month:
- Site-wide: 144,446
Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia
cancer biology more details view paper- Downloaded 406 times
- Download rankings, all-time:
- Site-wide: 108,644
- In cancer biology: 3,006
- Year to date:
- Site-wide: 175,724
- Since beginning of last month:
- Site-wide: 170,624
Pdap1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification
immunology more details view paper- Downloaded 374 times
- Download rankings, all-time:
- Site-wide: 116,879
- In immunology: 3,408
- Year to date:
- Site-wide: 144,323
- Since beginning of last month:
- Site-wide: 134,565
PanLingua
News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
- 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
- 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
- 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
- 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
- 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
- 22 Jan 2019: Nature just published an article about Rxivist and our data.
- 13 Jan 2019: The Rxivist preprint is live!