Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,660 bioRxiv papers from 278,042 authors.

Author: Jeffrey T Leek

Rankings

  • All-time downloads: 57,641 (rank: 212 out of 278,042)
  • Categories:
    • bioinformatics: 30,312 (rank: 57 out of 24,398)
    • genomics: 11,300 (rank: 853 out of 31,942)
    • neuroscience: 2,066 (rank: 4,222 (tie) out of 45,840)
    • scientific communication and education: 5,832 (rank: 51 out of 2,323)

Downloads per author, site-wide

Preprints

Flexible analysis of transcriptome assemblies with Ballgown

bioinformatics more details view paper
  • Downloaded 13,332 times
  • Download rankings, all-time:
    • Site-wide: 59 out of 62,660
    • In bioinformatics: 9 out of 6,242
  • Year to date:
    • Site-wide: 1,997 out of 62,660
  • Since beginning of last month:
    • Site-wide: 4,960 out of 62,660

A statistical definition for reproducibility and replicability

more details view paper
  • Downloaded 8,131 times
  • Download rankings, all-time:
    • Site-wide: 159 out of 62,660
  • Year to date:
    • Site-wide: 1,077 out of 62,660
  • Since beginning of last month:
    • Site-wide: 2,083 out of 62,660

Is most published research really false?

scientific communication and education more details view paper
  • Downloaded 3,866 times
  • Download rankings, all-time:
    • Site-wide: 671 out of 62,660
    • In scientific communication and education: 17 out of 447
  • Year to date:
    • Site-wide: 24,906 out of 62,660
  • Since beginning of last month:
    • Site-wide: 28,578 out of 62,660

recount: A large-scale resource of analysis-ready RNA-seq expression data

genomics more details view paper
  • Downloaded 3,534 times
  • Download rankings, all-time:
    • Site-wide: 798 out of 62,660
    • In genomics: 206 out of 4,312
  • Year to date:
    • Site-wide: 7,256 out of 62,660
  • Since beginning of last month:
    • Site-wide: 5,477 out of 62,660

Rail-RNA: Scalable analysis of RNA-seq splicing and coverage

bioinformatics more details view paper
  • Downloaded 3,224 times
  • Download rankings, all-time:
    • Site-wide: 938 out of 62,660
    • In bioinformatics: 188 out of 6,242
  • Year to date:
    • Site-wide: 30,936 out of 62,660
  • Since beginning of last month:
    • Site-wide: 36,838 out of 62,660

svaseq: removing batch effects and other unwanted noise from sequencing data

bioinformatics more details view paper
  • Downloaded 3,140 times
  • Download rankings, all-time:
    • Site-wide: 980 out of 62,660
    • In bioinformatics: 201 out of 6,242
  • Year to date:
    • Site-wide: 15,763 out of 62,660
  • Since beginning of last month:
    • Site-wide: 11,647 out of 62,660

Human splicing diversity across the Sequence Read Archive

genomics more details view paper
  • Downloaded 2,248 times
  • Download rankings, all-time:
    • Site-wide: 1,801 out of 62,660
    • In genomics: 400 out of 4,312
  • Year to date:
    • Site-wide: 40,236 out of 62,660
  • Since beginning of last month:
    • Site-wide: 24,152 out of 62,660

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,173 times
  • Download rankings, all-time:
    • Site-wide: 1,920 out of 62,660
    • In bioinformatics: 393 out of 6,242
  • Year to date:
    • Site-wide: 37,543 out of 62,660
  • Since beginning of last month:
    • Site-wide: 55,095 out of 62,660

Polyester: simulating RNA-seq datasets with differential transcript expression

bioinformatics more details view paper
  • Downloaded 2,086 times
  • Download rankings, all-time:
    • Site-wide: 2,073 out of 62,660
    • In bioinformatics: 430 out of 6,242
  • Year to date:
    • Site-wide: 21,739 out of 62,660
  • Since beginning of last month:
    • Site-wide: 20,117 out of 62,660

Developmental And Genetic Regulation Of The Human Cortex Transcriptome In Schizophrenia

neuroscience more details view paper
  • Downloaded 2,066 times
  • Download rankings, all-time:
    • Site-wide: 2,100 out of 62,660
    • In neuroscience: 300 out of 11,193
  • Year to date:
    • Site-wide: 16,017 out of 62,660
  • Since beginning of last month:
    • Site-wide: 17,381 out of 62,660

Addressing confounding artifacts in reconstruction of gene co-expression networks

genomics more details view paper
  • Downloaded 1,992 times
  • Download rankings, all-time:
    • Site-wide: 2,256 out of 62,660
    • In genomics: 474 out of 4,312
  • Year to date:
    • Site-wide: 4,745 out of 62,660
  • Since beginning of last month:
    • Site-wide: None out of 62,660

A direct approach to estimating false discovery rates conditional on covariates

bioinformatics more details view paper
  • Downloaded 1,654 times
  • Download rankings, all-time:
    • Site-wide: 3,083 out of 62,660
    • In bioinformatics: 625 out of 6,242
  • Year to date:
    • Site-wide: 14,938 out of 62,660
  • Since beginning of last month:
    • Site-wide: 20,868 out of 62,660

A framework for RNA quality correction in differential expression analysis

bioinformatics more details view paper
  • Downloaded 1,529 times
  • Download rankings, all-time:
    • Site-wide: 3,515 out of 62,660
    • In bioinformatics: 711 out of 6,242
  • Year to date:
    • Site-wide: 37,667 out of 62,660
  • Since beginning of last month:
    • Site-wide: 41,365 out of 62,660

RNA-seq transcript quantification from reduced-representation data in recount2

genomics more details view paper
  • Downloaded 1,419 times
  • Download rankings, all-time:
    • Site-wide: 4,003 out of 62,660
    • In genomics: 738 out of 4,312
  • Year to date:
    • Site-wide: 4,951 out of 62,660
  • Since beginning of last month:
    • Site-wide: 8,832 out of 62,660

Improving the value of public RNA-seq expression data by phenotype prediction

bioinformatics more details view paper
  • Downloaded 1,415 times
  • Download rankings, all-time:
    • Site-wide: 4,017 out of 62,660
    • In bioinformatics: 801 out of 6,242
  • Year to date:
    • Site-wide: 31,157 out of 62,660
  • Since beginning of last month:
    • Site-wide: 23,106 out of 62,660

Explanation implies causation?

scientific communication and education more details view paper
  • Downloaded 1,327 times
  • Download rankings, all-time:
    • Site-wide: 4,437 out of 62,660
    • In scientific communication and education: 57 out of 447
  • Year to date:
    • Site-wide: 27,743 out of 62,660
  • Since beginning of last month:
    • Site-wide: 32,771 out of 62,660

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce

bioinformatics more details view paper
  • Downloaded 899 times
  • Download rankings, all-time:
    • Site-wide: 8,391 out of 62,660
    • In bioinformatics: 1,476 out of 6,242
  • Year to date:
    • Site-wide: 45,936 out of 62,660
  • Since beginning of last month:
    • Site-wide: 38,522 out of 62,660

Avoiding test set bias with rank-based prediction

genomics more details view paper
  • Downloaded 855 times
  • Download rankings, all-time:
    • Site-wide: 9,072 out of 62,660
    • In genomics: 1,376 out of 4,312
  • Year to date:
    • Site-wide: 55,159 out of 62,660
  • Since beginning of last month:
    • Site-wide: 49,305 out of 62,660

recount-brain: a curated repository of human brain RNA-seq datasets metadata

genomics more details view paper
  • Downloaded 664 times
  • Download rankings, all-time:
    • Site-wide: 13,137 out of 62,660
    • In genomics: 1,775 out of 4,312
  • Year to date:
    • Site-wide: 2,999 out of 62,660
  • Since beginning of last month:
    • Site-wide: 3,908 out of 62,660

crsra: A package for Cleaning and Analyzing Coursera Research Export Data

scientific communication and education more details view paper
  • Downloaded 639 times
  • Download rankings, all-time:
    • Site-wide: 13,820 out of 62,660
    • In scientific communication and education: 134 out of 447
  • Year to date:
    • Site-wide: 11,115 out of 62,660
  • Since beginning of last month:
    • Site-wide: 8,788 out of 62,660

Recounting the FANTOM Cage Associated Transcriptome

genomics more details view paper
  • Downloaded 588 times
  • Download rankings, all-time:
    • Site-wide: 15,531 out of 62,660
    • In genomics: 1,969 out of 4,312
  • Year to date:
    • Site-wide: 3,716 out of 62,660
  • Since beginning of last month:
    • Site-wide: 7,352 out of 62,660

Measuring the Contribution of Genomic Predictors to Improving Estimator Precision in Randomized trials

bioinformatics more details view paper
  • Downloaded 434 times
  • Download rankings, all-time:
    • Site-wide: 22,633 out of 62,660
    • In bioinformatics: 3,230 out of 6,242
  • Year to date:
    • Site-wide: 57,646 out of 62,660
  • Since beginning of last month:
    • Site-wide: 52,820 out of 62,660

regionReport: Interactive reports for region-based analyses

bioinformatics more details view paper
  • Downloaded 426 times
  • Download rankings, all-time:
    • Site-wide: 23,072 out of 62,660
    • In bioinformatics: 3,274 out of 6,242
  • Year to date:
    • Site-wide: 60,588 out of 62,660
  • Since beginning of last month:
    • Site-wide: 60,746 out of 62,660

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News