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Author: Dick de Ridder

Rankings

  • All-time downloads: 17,134 (rank: 4,340 out of 428,328)
  • Categories:
    • bioinformatics: 6,707 (rank: 1,283 (tie) out of 36,286)
    • biophysics: 221 (rank: 14,415 (tie) out of 18,229)
    • evolutionary biology: 373 (rank: 14,222 (tie) out of 21,828)
    • genetics: 2,854 (rank: 5,846 (tie) out of 38,055)
    • genomics: 6,005 (rank: 3,141 (tie) out of 44,710)
    • plant biology: 613 (rank: 5,496 (tie) out of 16,885)
    • systems biology: 361 (rank: 8,653 (tie) out of 12,504)

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Preprints

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
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A Sequencer Coming Of Age: De Novo Genome Assembly Using MinION Reads

genetics more details view paper
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    • In genetics: 201 out of 5,038
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Exploiting Next Generation Sequencing to solve the Haplotyping puzzle in Polyploids: a Simulation study

bioinformatics more details view paper
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Improving intermolecular contact prediction through protein-protein interaction prediction using coevolutionary analysis with expectation-maximization

bioinformatics more details view paper
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Correcting palindromes in long reads after whole-genome amplification

genomics more details view paper
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    • In genomics: 2,162 out of 6,281
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poreTally: run and publish de novo Nanopore assembler benchmarks

bioinformatics more details view paper
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    • In bioinformatics: 2,816 out of 9,295
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BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters

bioinformatics more details view paper
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TriPoly: a haplotype estimation approach for polyploids using sequencing data of related individuals

bioinformatics more details view paper
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    • In bioinformatics: 3,387 out of 9,295
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Family-based haplotype estimation and allele dosage correction for polyploids using short sequence reads

bioinformatics more details view paper
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    • In bioinformatics: 4,528 out of 9,295
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    • Site-wide: 76,316 out of 101,401

Pangenomic read mapping

bioinformatics more details view paper
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    • In bioinformatics: 4,560 out of 9,295
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    • Site-wide: 23,465 out of 101,401

An Analysis of Characterized Plant Sesquiterpene Synthases

bioinformatics more details view paper
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    • In bioinformatics: 5,100 out of 9,295
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The genome of Peronospora belbahrii reveals high heterozygosity, a low number of canonical effectors and CT-rich promoters

genomics more details view paper
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    • Site-wide: 33,295 out of 101,401

Oomycete metabolism is highly dynamic and reflects lifestyle adaptations

evolutionary biology more details view paper
  • Downloaded 373 times
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    • In evolutionary biology: 3,350 out of 6,039
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    • Site-wide: 27,261 out of 101,401

Genome-wide characterization of Phytophthora infestans metabolism: a systems biology approach

systems biology more details view paper
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    • Site-wide: 52,306 out of 101,401
    • In systems biology: 1,504 out of 2,573
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    • Site-wide: 83,113 out of 101,401

Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data

bioinformatics more details view paper
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    • In bioinformatics: 6,320 out of 9,295
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Network analysis prioritizes DEWAX and ICE1 as the candidate genes for two major eQTL hotspots in seed germination

plant biology more details view paper
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    • In plant biology: 1,741 out of 3,205
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    • Site-wide: 21,630 out of 101,401

Evolutionarily conserved non-protein-coding regions in the chicken genome harbor functionally important variation

genomics more details view paper
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    • In genomics: 4,746 out of 6,281
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    • Site-wide: 24,851 out of 101,401

Widespread targeting of development-related host transcription factors by phytoplasma effectors

plant biology more details view paper
  • Downloaded 296 times
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    • Site-wide: 62,026 out of 101,401
    • In plant biology: 1,850 out of 3,205
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    • Site-wide: 16,979 out of 101,401
  • Since beginning of last month:
    • Site-wide: 42,664 out of 101,401

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

bioinformatics more details view paper
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    • In bioinformatics: 6,755 out of 9,295
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    • Site-wide: 52,781 out of 101,401

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

genetics more details view paper
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    • In genetics: 3,828 out of 5,038
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FRETboard: semi-supervised classification of FRET traces

biophysics more details view paper
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    • In biophysics: 3,299 out of 4,474
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    • Site-wide: 8,029 out of 101,401

Geometricus Represents Protein Structures as Shape-mers Derived from Moment Invariants

bioinformatics more details view paper
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    • Site-wide: 87,405 out of 101,401
    • In bioinformatics: 8,414 out of 9,295
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    • Site-wide: 4,021 out of 101,401

Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

bioinformatics more details view paper
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    • Site-wide: 91,499 out of 101,401
    • In bioinformatics: 8,678 out of 9,295
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    • Site-wide: 12,407 out of 101,401

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