Rxivist logo

Author: Dick de Ridder

Rankings

  • All-time downloads: 18,750 (rank: 8,069 )
  • Categories:
    • bioinformatics: 7,317 (rank: 1,178 )
    • biophysics: 281 (rank: 14,099 (tie) )
    • evolutionary biology: 402 (rank: 14,579 (tie) )
    • genetic and genomic medicine: 562 (rank: 2,603 (tie) )
    • genetics: 2,939 (rank: 5,965 (tie) )
    • genomics: 6,178 (rank: 3,257 (tie) )
    • plant biology: 697 (rank: 5,250 (tie) )
    • systems biology: 374 (rank: 9,265 (tie) )

Downloads per author, site-wide

Preprints

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,549 times
  • Download rankings, all-time:
    • Site-wide: 1,978
    • In genomics: 225
  • Year to date:
    • Site-wide: 22,788
  • Since beginning of last month:
    • Site-wide: 16,769

A Sequencer Coming Of Age: De Novo Genome Assembly Using MinION Reads

genetics more details view paper
  • Downloaded 2,686 times
  • Download rankings, all-time:
    • Site-wide: 4,219
    • In genetics: 203
  • Year to date:
    • Site-wide: 52,486
  • Since beginning of last month:
    • Site-wide: 23,108

Exploiting Next Generation Sequencing to solve the Haplotyping puzzle in Polyploids: a Simulation study

bioinformatics more details view paper
  • Downloaded 1,228 times
  • Download rankings, all-time:
    • Site-wide: 13,608
    • In bioinformatics: 1,708
  • Year to date:
    • Site-wide: 83,217
  • Since beginning of last month:
    • Site-wide: 63,853

BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters

bioinformatics more details view paper
  • Downloaded 1,059 times
  • Download rankings, all-time:
    • Site-wide: 17,009
    • In bioinformatics: 2,113
  • Year to date:
    • Site-wide: 1,968
  • Since beginning of last month:
    • Site-wide: 8,366

Improving intermolecular contact prediction through protein-protein interaction prediction using coevolutionary analysis with expectation-maximization

bioinformatics more details view paper
  • Downloaded 942 times
  • Download rankings, all-time:
    • Site-wide: 20,192
    • In bioinformatics: 2,493
  • Year to date:
    • Site-wide: 105,653
  • Since beginning of last month:
    • Site-wide: 43,381

Correcting palindromes in long reads after whole-genome amplification

genomics more details view paper
  • Downloaded 873 times
  • Download rankings, all-time:
    • Site-wide: 22,577
    • In genomics: 2,238
  • Year to date:
    • Site-wide: 93,135
  • Since beginning of last month:
    • Site-wide: 78,582

poreTally: run and publish de novo Nanopore assembler benchmarks

bioinformatics more details view paper
  • Downloaded 816 times
  • Download rankings, all-time:
    • Site-wide: 24,853
    • In bioinformatics: 3,006
  • Year to date:
    • Site-wide: 118,217
  • Since beginning of last month:
    • Site-wide: 94,960

TriPoly: a haplotype estimation approach for polyploids using sequencing data of related individuals

bioinformatics more details view paper
  • Downloaded 685 times
  • Download rankings, all-time:
    • Site-wide: 31,620
    • In bioinformatics: 3,649
  • Year to date:
    • Site-wide: 110,681
  • Since beginning of last month:
    • Site-wide: 117,740

Pangenomic read mapping

bioinformatics more details view paper
  • Downloaded 567 times
  • Download rankings, all-time:
    • Site-wide: 40,346
    • In bioinformatics: 4,430
  • Year to date:
    • Site-wide: 24,565
  • Since beginning of last month:
    • Site-wide: 31,855

CAPICE: a computational method for Consequence-Agnostic Pathogenicity Interpretation of Clinical Exome variations

genetic and genomic medicine more details view paper
  • Downloaded 562 times
  • Download rankings, all-time:
    • Site-wide: 40,782
    • In genetic and genomic medicine: 105
  • Year to date:
    • Site-wide: 101,581
  • Since beginning of last month:
    • Site-wide: 57,938

Family-based haplotype estimation and allele dosage correction for polyploids using short sequence reads

bioinformatics more details view paper
  • Downloaded 520 times
  • Download rankings, all-time:
    • Site-wide: 44,929
    • In bioinformatics: 4,804
  • Year to date:
    • Site-wide: 81,305
  • Since beginning of last month:
    • Site-wide: 103,568

An Analysis of Characterized Plant Sesquiterpene Synthases

bioinformatics more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 49,644
    • In bioinformatics: 5,200
  • Year to date:
    • Site-wide: 71,288
  • Since beginning of last month:
    • Site-wide: 64,042

The genome of Peronospora belbahrii reveals high heterozygosity, a low number of canonical effectors and CT-rich promoters

genomics more details view paper
  • Downloaded 425 times
  • Download rankings, all-time:
    • Site-wide: 56,179
    • In genomics: 4,259
  • Year to date:
    • Site-wide: 77,494
  • Since beginning of last month:
    • Site-wide: 70,193

Oomycete metabolism is highly dynamic and reflects lifestyle adaptations

evolutionary biology more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 59,523
    • In evolutionary biology: 3,376
  • Year to date:
    • Site-wide: 81,983
  • Since beginning of last month:
    • Site-wide: 74,998

Genome-wide characterization of Phytophthora infestans metabolism: a systems biology approach

systems biology more details view paper
  • Downloaded 374 times
  • Download rankings, all-time:
    • Site-wide: 63,743
    • In systems biology: 1,586
  • Year to date:
    • Site-wide: 90,923
  • Since beginning of last month:
    • Site-wide: 107,670

Network analysis prioritizes DEWAX and ICE1 as the candidate genes for two major eQTL hotspots in seed germination

plant biology more details view paper
  • Downloaded 369 times
  • Download rankings, all-time:
    • Site-wide: 64,606
    • In plant biology: 1,684
  • Year to date:
    • Site-wide: 29,378
  • Since beginning of last month:
    • Site-wide: 38,462

Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data

bioinformatics more details view paper
  • Downloaded 346 times
  • Download rankings, all-time:
    • Site-wide: 68,479
    • In bioinformatics: 6,617
  • Year to date:
    • Site-wide: 69,780
  • Since beginning of last month:
    • Site-wide: 109,449

Evolutionarily conserved non-protein-coding regions in the chicken genome harbor functionally important variation

genomics more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 70,971
    • In genomics: 4,921
  • Year to date:
    • Site-wide: 86,159
  • Since beginning of last month:
    • Site-wide: 67,667

Widespread targeting of development-related host transcription factors by phytoplasma effectors

plant biology more details view paper
  • Downloaded 328 times
  • Download rankings, all-time:
    • Site-wide: 71,518
    • In plant biology: 1,913
  • Year to date:
    • Site-wide: 67,330
  • Since beginning of last month:
    • Site-wide: 47,067

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

bioinformatics more details view paper
  • Downloaded 320 times
  • Download rankings, all-time:
    • Site-wide: 73,024
    • In bioinformatics: 6,903
  • Year to date:
    • Site-wide: 62,731
  • Since beginning of last month:
    • Site-wide: 57,615

FRETboard: semi-supervised classification of FRET traces

biophysics more details view paper
  • Downloaded 281 times
  • Download rankings, all-time:
    • Site-wide: 80,492
    • In biophysics: 3,107
  • Year to date:
    • Site-wide: 30,244
  • Since beginning of last month:
    • Site-wide: 30,713

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

genetics more details view paper
  • Downloaded 253 times
  • Download rankings, all-time:
    • Site-wide: 86,216
    • In genetics: 4,005
  • Year to date:
    • Site-wide: 96,201
  • Since beginning of last month:
    • Site-wide: 87,627

Geometricus Represents Protein Structures as Shape-mers Derived from Moment Invariants

bioinformatics more details view paper
  • Downloaded 196 times
  • Download rankings, all-time:
    • Site-wide: 98,190
    • In bioinformatics: 8,473
  • Year to date:
    • Site-wide: 68,796
  • Since beginning of last month:
    • Site-wide: 37,112

Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

bioinformatics more details view paper
  • Downloaded 161 times
  • Download rankings, all-time:
    • Site-wide: 105,257
    • In bioinformatics: 8,906
  • Year to date:
    • Site-wide: 61,049
  • Since beginning of last month:
    • Site-wide: 29,199

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News